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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916381
Clone id YMU001_000087_A12
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGGAGCAAGGGGTCTCTGATGAGGCCATCATCAAGCTGGTCGAAAGGGAGCCTCGTGT
GCTAGGAAAGTCGATGGATAGTTTGAAAACGAGGCTTGATTTTCTGCTTCACACCCACAA
TCGGAGCATTGCTGAAATTGTGAGTTTTCCTGCCTGTCTTTTATACAGCTTCAAGAACCG
GATCAAACCCAGGTTGGAATTTTTGGAAAAGAGTTCTTCGCATGGTTCATTTGGTTTGGC
CTACGTGTTAGCCATAAAGAGCTGCAAGTTTAGGACGGCTTTTAAGGTTCCTGAATCAGT
TTTTCCCATTTGAAGAAAGGGATATTGTTGGGAATATACTTTTGTTGTGGCTTATGAGAT
TCTGTGCTGTATTAGTTCGGTCTATGTAATTATGGCAAATACTTTGTGCCCTGGCATGGA
AATGCCATGATCCCTTCATTAGTTACTGGCAAGGCTGGCAGGCTCTGCCTT
■■Homology search results ■■ -
sp_hit_id Q9EPI8
Definition sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus norvegicus
Align length 76
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916381|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A12.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondr...    32   1.8  
sp|O74500|NUP60_SCHPO Nucleoporin nup60 OS=Schizosaccharomyces p...    31   2.4  
sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochon...    31   2.4  

>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial
           OS=Rattus norvegicus GN=Mterf PE=1 SV=1
          Length = 374

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHT-----HNRS---IAEIVSFPACLLY 166
           G++ + + +L+   PR    S++  K  ++FL  T     HN     + +I+S    +L 
Sbjct: 164 GLTHKCLCRLLTSAPRTFSNSLNLNKQMVEFLQETGISLGHNNPTDFVRKIISKNPSILI 223

Query: 167 SFKNRIKPRLEFLEKS 214
               R+K  +EFL+ +
Sbjct: 224 QSTKRVKTNIEFLQST 239


>sp|O74500|NUP60_SCHPO Nucleoporin nup60 OS=Schizosaccharomyces
           pombe GN=nup60 PE=1 SV=1
          Length = 736

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 185 KPRL--EFLEKSSSHGSFGLAYVLAIKSCKFRTAFKVPESVFPI 310
           KP L  EFLEK+S+HGSF         S   +TA   PE+  P+
Sbjct: 406 KPSLMPEFLEKASTHGSFAKQKEGEQTSLSEKTALSEPENKTPV 449


>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor,
           mitochondrial OS=Mus musculus GN=Mterf PE=2 SV=1
          Length = 379

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHT-----HNRS---IAEIVSFPACLLY 166
           G++ + + +L+   PR    S++  K  ++FL  T     HN     + +I+S    +L 
Sbjct: 169 GLTHKCLCRLLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHNDPRDFVRKIISKNPSILI 228

Query: 167 SFKNRIKPRLEFLEKS 214
               R+K  +EFL+ +
Sbjct: 229 QSTKRVKTNIEFLQST 244
tr_hit_id A9RN89
Definition tr|A9RN89|A9RN89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 66
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916381|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A12.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RN89|A9RN89_PHYPA Predicted protein OS=Physcomitrella paten...    55   1e-06
tr|A9SC24|A9SC24_PHYPA Predicted protein OS=Physcomitrella paten...    53   9e-06
tr|Q9FK23|Q9FK23_ARATH Genomic DNA, chromosome 5, TAC clone: K18...    50   7e-05
tr|Q8L9V2|Q8L9V2_ARATH Putative uncharacterized protein OS=Arabi...    50   7e-05
tr|A7QEW0|A7QEW0_VITVI Chromosome chr16 scaffold_86, whole genom...    50   7e-05
tr|A5AKA1|A5AKA1_VITVI Putative uncharacterized protein OS=Vitis...    50   7e-05
tr|A9S9N6|A9S9N6_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   3e-04
tr|A9RYZ6|A9RYZ6_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|B6SVQ8|B6SVQ8_MAIZE mTERF family protein OS=Zea mays PE=2 SV=1      47   4e-04
tr|Q7XA82|Q7XA82_ARATH At1g78930 OS=Arabidopsis thaliana PE=2 SV=1     46   8e-04
tr|Q0WRV2|Q0WRV2_ARATH Putative uncharacterized protein At1g7893...    46   8e-04
tr|O64555|O64555_ARATH YUP8H12R.46 protein OS=Arabidopsis thalia...    46   8e-04
tr|A7QMG5|A7QMG5_VITVI Chromosome undetermined scaffold_125, who...    46   8e-04
tr|A5CAF4|A5CAF4_VITVI Putative uncharacterized protein OS=Vitis...    46   8e-04
tr|Q9M219|Q9M219_ARATH Putative uncharacterized protein T8B10_60...    46   0.001
tr|A9RX67|A9RX67_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|Q9FF87|Q9FF87_ARATH Arabidopsis thaliana genomic DNA, chromos...    45   0.001
tr|A9TLG3|A9TLG3_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.002
tr|A2Y4J0|A2Y4J0_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q6AUK6|Q6AUK6_ORYSJ Os05g0404000 protein OS=Oryza sativa subs...    44   0.003
tr|A3B3W6|A3B3W6_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A9RPL9|A9RPL9_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.004
tr|Q653Q9|Q653Q9_ORYSJ Putative uncharacterized protein OJ1065_E...    43   0.007
tr|B8LRB7|B8LRB7_PICSI Putative uncharacterized protein OS=Picea...    43   0.007
tr|A7PU38|A7PU38_VITVI Chromosome chr7 scaffold_31, whole genome...    43   0.007
tr|A5BTA9|A5BTA9_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|Q6DBE5|Q6DBE5_ARATH At1g62120 OS=Arabidopsis thaliana GN=At1g...    43   0.009
tr|O04578|O04578_ARATH F19K23.6 protein OS=Arabidopsis thaliana ...    43   0.009
tr|B7ZXX8|B7ZXX8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|B6SUD8|B6SUD8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012

>tr|A9RN89|A9RN89_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68376 PE=4 SV=1
          Length = 570

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMD-SLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIK 187
           G+    + +++   P ++G S++ S+K ++DFLL+  NRS+ EIVSFP  L YS   RI+
Sbjct: 471 GLERREVGRMIAVYPALIGHSLETSIKPKIDFLLNVMNRSVNEIVSFPQYLSYSLPCRIQ 530

Query: 188 PRLEFL 205
           PR E+L
Sbjct: 531 PRYEYL 536


>tr|A9SC24|A9SC24_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_210658 PE=4 SV=1
          Length = 270

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = +2

Query: 2   KEQGVSDEAIIKLVEREPRVLGKSMD-SLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKN 178
           K  G+++ +I  ++   P +LG+S++ SL  + ++L+H  NR I E+V FP    YS + 
Sbjct: 152 KGLGLTENSIADMIVLFPSMLGQSIEGSLAPKFNYLIHEMNRPIEELVEFPQYFGYSLER 211

Query: 179 RIKPRLEFLEKSSSHGSFGLAYVLAIKSCKFRTAF 283
           RIKPR E L+  +   S  LA +LA     F+  +
Sbjct: 212 RIKPRHELLKGKAITTS--LASMLACVEDDFKARY 244


>tr|Q9FK23|Q9FK23_ARATH Genomic DNA, chromosome 5, TAC clone: K18G13
           (Putative uncharacterized protein At5g54180)
           OS=Arabidopsis thaliana GN=At5g54180 PE=2 SV=1
          Length = 500

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKP 190
           G+S E I+ +  + P+VL  +  SL+ +L++L+    R + E+++FPA L Y   +RIK 
Sbjct: 403 GLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKH 462

Query: 191 RLEFLEKSSSHG-SFGLAYVLAIKSCKFRTA 280
           R E  EK  S G +  L  +L + + +F  A
Sbjct: 463 RYE--EKLKSRGENMSLNKLLTVSAERFSKA 491


>tr|Q8L9V2|Q8L9V2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 500

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKP 190
           G+S E I+ +  + P+VL  +  SL+ +L++L+    R + E+++FPA L Y   +RIK 
Sbjct: 403 GLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKH 462

Query: 191 RLEFLEKSSSHG-SFGLAYVLAIKSCKFRTA 280
           R E  EK  S G +  L  +L + + +F  A
Sbjct: 463 RYE--EKLKSRGENMSLNKLLTVSAERFSKA 491


>tr|A7QEW0|A7QEW0_VITVI Chromosome chr16 scaffold_86, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037176001
           PE=4 SV=1
          Length = 701

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/87 (31%), Positives = 50/87 (57%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKP 190
           G+S E I+ +  + P++L  +  SLK ++++L+    R + E+++FPA L Y   +RIK 
Sbjct: 596 GLSCEDIVAMSNKHPQILQYNPTSLKEKIEYLIEDMGREVDELLAFPAFLGYKLDDRIKH 655

Query: 191 RLEFLEKSSSHGSFGLAYVLAIKSCKF 271
           R E  +K    G   L  +L++ + +F
Sbjct: 656 RYEVKKKIIGEG-MSLNKLLSVSTERF 681


>tr|A5AKA1|A5AKA1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018393 PE=4 SV=1
          Length = 478

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/87 (31%), Positives = 50/87 (57%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKP 190
           G+S E I+ +  + P++L  +  SLK ++++L+    R + E+++FPA L Y   +RIK 
Sbjct: 381 GLSCEDIVAMSNKHPQILQYNPTSLKEKIEYLIEDMGREVDELLAFPAFLGYKLDDRIKH 440

Query: 191 RLEFLEKSSSHGSFGLAYVLAIKSCKF 271
           R E  +K    G   L  +L++ + +F
Sbjct: 441 RYEVKKKIIGEG-MSLNKLLSVSTERF 466


>tr|A9S9N6|A9S9N6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47073 PE=4 SV=1
          Length = 216

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = +2

Query: 11  GVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKP 190
           G + + +  +++  P VL  +   L+ + DFL    NRS+ E+++F A + YS + RIKP
Sbjct: 155 GFTQDEVCSILKMHPTVLSSTETHLRKKFDFLTTVMNRSLKEVLTFTAFVTYSLERRIKP 214

Query: 191 R 193
           R
Sbjct: 215 R 215


>tr|A9RYZ6|A9RYZ6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161831 PE=4 SV=1
          Length = 492

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +2

Query: 29  IIKLVEREPRVLGKSMD-SLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRIKPRLEFL 205
           I  +V   P++L  S++ SLK  LD+L+    R + E++ FPA LLY+ +  ++PR E +
Sbjct: 344 IASMVTNCPQLLAASIEKSLKPNLDYLVEKMERELTEVIEFPAYLLYNLEEVVQPRHEEI 403

Query: 206 EKSSSHGSFGLAYVLAIKSCKFR 274
            KS    S  LA++L      FR
Sbjct: 404 TKSGVECS--LAWMLNCADDIFR 424


>tr|B6SVQ8|B6SVQ8_MAIZE mTERF family protein OS=Zea mays PE=2 SV=1
          Length = 574

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/74 (32%), Positives = 40/74 (54%)
 Frame = +2

Query: 5   EQGVSDEAIIKLVEREPRVLGKSMDSLKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNRI 184
           E+GV  + + +++   P+VL +S D L  +L++L      S+  +  FPA L +  +NR+
Sbjct: 443 ERGVEYKILCRILRVFPKVLNQSKDMLNEKLNYLTEELGYSLEYLGCFPAFLCFDLENRV 502

Query: 185 KPRLEFLEKSSSHG 226
           KPR   L     HG
Sbjct: 503 KPRYTMLWWLQEHG 516


>tr|Q7XA82|Q7XA82_ARATH At1g78930 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 525

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5   EQGVSDEAIIKLVEREPRVLGKSMDS-LKTRLDFLLHTHNRSIAEIVSFPACLLYSFKNR 181
           E G+S+  I  ++ +   +LG S+D  L+ + +FL+++  + + E++ +P    YS + R
Sbjct: 421 EIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKR 480

Query: 182 IKPRLEFLE 208
           IKPR   L+
Sbjct: 481 IKPRFRVLK 489