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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916386
Clone id YMU001_000087_B05
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTCGAGTTAATGATGATGATGATGGTGGGATCGTGTCGGCCATTTTGTATTACATAAA
CAAATTACCTCCGATAATTACCAGAAGAACCCCCAGCGGTGCAGAATCACAAACAATAAA
ATTACCGCAGCGCCATCAATATAGTGAAAAGTGGATTGTGGAGCTACAGGCAATCGCACC
TTTAGAATTTTCCATAGCCACCAAAAGAAGAATACTGTAGAAGAGGGCCCACAAATGCAT
AAAAAGAAGGGAAAGTGGTGCACCAAAAGAAAGATCAAGGCCATCCTCTGCTATACCACC
AGGACTATGTTTTAAAAAAATATACTTTCCTCCTCCACATAAAGTATCTCCAATTTAAGG
GACAAATGCAACAAAGGAGAGGAGATGACCACCGCTTCGTGGCCAGTCCCAGAGCTAGAG
CAGCAAACCTCCAAGACCACCGAGAGAATACTGTAGAAGAGGCTCACAGCTTCGTATAAA
AAGAAACGGAAAGCCCTGCACCAAAAGAATGATAAAGGCCATCATCCACTCCAT
■■Homology search results ■■ -
sp_hit_id Q2QI47
Definition sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus
Align length 58
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916386|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B05.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1       32   1.9  
sp|Q2YB78|RBL_NITMU Ribulose bisphosphate carboxylase large chai...    32   1.9  
sp|Q9SYQ1|PHT18_ARATH Probable inorganic phosphate transporter 1...    32   2.5  
sp|Q1XDD9|SYH_PORYE Histidyl-tRNA synthetase, chloroplastic OS=P...    32   2.5  
sp|P41183|BCL6_MOUSE B-cell lymphoma 6 protein homolog OS=Mus mu...    30   5.6  
sp|P27622|TAGC_BACSU Putative major teichoic acid biosynthesis p...    30   5.7  
sp|Q93A90|RBL_NITS4 Ribulose bisphosphate carboxylase large chai...    30   5.7  
sp|O94563|YGD4_SCHPO Putative uncharacterized oxidoreductase C17...    30   7.3  
sp|P51348|SYH_PORPU Histidyl-tRNA synthetase, chloroplastic OS=P...    30   7.4  
sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic O...    30   9.5  

>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1
          Length = 5193

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 140  YSEKWIVELQAIAPLEFSIATKRRIL*KRAHK--CIKRRESGAP-KERSRPSSAIPPG 304
            YSE W + + A+  L         IL ++ HK  CI+ R    P ++R  P S  PPG
Sbjct: 5029 YSELWFIMVMAVVGLILLAIFLSLILQRKIHKEPCIRERPPLVPLQKRMTPLSVYPPG 5086


>sp|Q2YB78|RBL_NITMU Ribulose bisphosphate carboxylase large chain
           OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849) GN=cbbL PE=3 SV=1
          Length = 489

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 151 VDCGATGNRTF---RIFHSHQKKNTVEEGPQMHKKKGKWCTKRKI 276
           +  GA  NR      I   ++ ++ V+EGPQ+ ++  KWCT  K+
Sbjct: 417 IQAGAVANRVALEAMIMARNEGRDYVKEGPQILEEAAKWCTPLKL 461


>sp|Q9SYQ1|PHT18_ARATH Probable inorganic phosphate transporter 1-8
           OS=Arabidopsis thaliana GN=PHT1-8 PE=2 SV=2
          Length = 534

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -2

Query: 272 FLLVHHFPFFLCICGPSSTVFFFWWLWKILKVRLPVAPQSTFHYIDGAAVILLFVILHRW 93
           F++++   FF C  GP++T F       I     P   +ST H I GAA   L  I+   
Sbjct: 395 FMVLYGLVFFFCNFGPNTTTFI------IPAEHFPARFRSTCHGISGAAG-KLGAIVGTV 447

Query: 92  GFFW 81
           GF W
Sbjct: 448 GFLW 451


>sp|Q1XDD9|SYH_PORYE Histidyl-tRNA synthetase, chloroplastic
           OS=Porphyra yezoensis GN=hisS PE=3 SV=1
          Length = 430

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 348 DTLCGGGKYIFLKHSPGGIAEDGLDLSFGAPLSLL 244
           DT+CGGG+Y  L H  GG A   +  + G    LL
Sbjct: 279 DTICGGGRYDSLVHQLGGKATPAVGCAIGLERLLL 313


>sp|P41183|BCL6_MOUSE B-cell lymphoma 6 protein homolog OS=Mus
           musculus GN=Bcl6 PE=1 SV=1
          Length = 707

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 221 KRAHKCIKRRESGAPKERSRPSSAIPPGLCFKKIYFP 331
           +RA  C   R+   P E SRP+  + P LC   IY P
Sbjct: 228 ERALPCDSARQ--VPNEYSRPAMEVSPSLCHSNIYSP 262


>sp|P27622|TAGC_BACSU Putative major teichoic acid biosynthesis
           protein C OS=Bacillus subtilis GN=tagC PE=4 SV=1
          Length = 442

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
 Frame = +1

Query: 28  WDRVGHFVLHKQIT-----SDNYQKN---PQRCRITNNKITAAPSI**KVDCGATGNRTF 183
           +D     VL K+IT     S  Y+ N   P+   +  N  T A S+   +  G  GNR  
Sbjct: 223 FDSDNKIVLQKEITVGKDLSTRYENNFREPEGICMYTNPETGAKSLMVGITSGKEGNRIS 282

Query: 184 RIFHSHQKKNTVEEGPQM 237
           RI+  H  +N +   P +
Sbjct: 283 RIYAYHSYENFMNHVPML 300


>sp|Q93A90|RBL_NITS4 Ribulose bisphosphate carboxylase large chain
           OS=Nitrosospira sp. (strain 40KI) GN=cbbL PE=3 SV=1
          Length = 489

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 151 VDCGATGNRTF---RIFHSHQKKNTVEEGPQMHKKKGKWCTKRK 273
           +  GA  NR      I   ++ ++ V+EGPQ+ +   KWCT  K
Sbjct: 417 IQAGAVANRVALEAMILARNEGRDYVKEGPQILQTAAKWCTPLK 460


>sp|O94563|YGD4_SCHPO Putative uncharacterized oxidoreductase
           C1773.04 OS=Schizosaccharomyces pombe GN=SPBC1773.04
           PE=1 SV=1
          Length = 336

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 212 FFFWWLWKILKVRLPVAPQST-FHYID 135
           F  W+ W+++K R  VAP+S  F+Y+D
Sbjct: 214 FSTWFFWQLIKGRYEVAPESKFFNYVD 240


>sp|P51348|SYH_PORPU Histidyl-tRNA synthetase, chloroplastic
           OS=Porphyra purpurea GN=hisS PE=3 SV=1
          Length = 430

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 348 DTLCGGGKYIFLKHSPGGIAEDGLDLSFGAPLSLL 244
           DTLCGGG+Y  L H  GG     +  + G    LL
Sbjct: 279 DTLCGGGRYDSLIHQLGGNKTPAVGCAIGLERLLL 313


>sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic
           OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
          Length = 552

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +2

Query: 47  LYYINKLPPIITR----RTPSGAESQTIKLPQRHQYSEKWIVELQAIAPLEFSIATKRRI 214
           +Y ++ L  ++      R     E+Q+I   +  Q+ E W   L+ +  ++   A   RI
Sbjct: 405 VYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQF-EAWRDSLETVPTIKKLRAYAERI 463

Query: 215 L*KRAHKCIKRRESGAPKERSRPSSAIPPGLCFKKIYFPPPH 340
                 KC+ +     PK+  R    +  G+  K ++ P  H
Sbjct: 464 RTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQH 505
tr_hit_id B5ECF4
Definition tr|B5ECF4|B5ECF4_GEOBB Histidyl-tRNA synthetase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Align length 81
Score (bit) 35.4
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916386|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B05.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5ECF4|B5ECF4_GEOBB Histidyl-tRNA synthetase OS=Geobacter bem...    35   1.9  
tr|B7G9Y8|B7G9Y8_PHATR Predicted protein OS=Phaeodactylum tricor...    33   7.0  
tr|A8PDY6|A8PDY6_BRUMA Putative uncharacterized protein OS=Brugi...    33   7.0  
tr|B3JY94|B3JY94_9DELT Histidine--tRNA ligase OS=Geobacter sp. M...    33   9.3  

>tr|B5ECF4|B5ECF4_GEOBB Histidyl-tRNA synthetase OS=Geobacter
           bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
           GN=Gbem_0553 PE=4 SV=1
          Length = 440

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = -1

Query: 381 LSFVAFVP*IGDTLCGGGKYIFLKHSPGGIAEDGLDLSFGAPLSLLFMHLWALFYSILLL 202
           ++F  FVP +G+ +C GG+Y            D L   +G P      H     ++IL L
Sbjct: 282 ITFEGFVPGVGEAICSGGRY------------DDLTAKYGYP-----AHATGFAFNILAL 324

Query: 201 VAMENSKGAIACSSTIHFSLY 139
           +A  + +  +  SS+  F ++
Sbjct: 325 LASMSKRPEVEASSSRDFLIF 345


>tr|B7G9Y8|B7G9Y8_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_49241 PE=4 SV=1
          Length = 857

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 460 SSTVFSRWSWRFAALALGLATKRWSSPLL 374
           +S +   W+W++AAL   LAT++W S LL
Sbjct: 377 ASQLLPEWTWKYAALERFLATQQWQSALL 405


>tr|A8PDY6|A8PDY6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_23020 PE=4 SV=1
          Length = 1271

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 38  SAILYYINKLPPIITRRTPSGAESQTIKLPQRHQYSEKWIVELQAIAPLE--FSIA 199
           + IL Y+ + PP +++   +  E Q++KLP   +  +KWI  +  +AP E  F++A
Sbjct: 785 TVILTYLKEQPPQVSKALLALRE-QSLKLPHGKELEKKWIAYVSLLAPTENLFNVA 839


>tr|B3JY94|B3JY94_9DELT Histidine--tRNA ligase OS=Geobacter sp. M21
           GN=GM21DRAFT_2471 PE=4 SV=1
          Length = 440

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -1

Query: 381 LSFVAFVP*IGDTLCGGGKYIFLKHSPGGIAEDGLDLSFGAPLSLLFMHLWALFYSILLL 202
           ++F  FVP +G+ +C GG+Y            D L   +G P      H     ++IL L
Sbjct: 282 ITFEGFVPGVGEAICSGGRY------------DDLTAKYGYP-----AHATGFAFNILAL 324

Query: 201 VAMENSKGAIACSSTIHFSLY 139
           ++  + +  +  SS   F ++
Sbjct: 325 LSSMSKRPEVEASSGRDFLIF 345