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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916387
Clone id YMU001_000087_B06
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGATGAACATCACTTTTCATTAACTTTAGATATGGCACACTCAAAAACGTTACAATGATA
GCTTATGCTTGTTAAGGCTGGAGGCCAGCCTGTGAGTTTCCAAGTTCCAACTCTTAAGTC
AAACAGTTTCGATACCTGAGATTGGAATAAATGAAACTGCTTCAGGAGCACAAATTTGCC
CAACACAAATGCAGATCCAGAAAAGTTGTTAATGGTGTTATCTGAATCGGTCTCTGTAAC
AGTTATATACCTTGAAGTTCTTAACAAACGATGAATCACAGCTGAAACACCTTGACAAAT
TTTCATCTCATATATCACTGGAACACAATTACAACAATAGGCCGCAGCTCTTCTCTTTGA
TGCCTCATTGAGGCACTGTAAGCGAGGCTGGCAATGCTATACTCCAATTTATCGGTGACT
GAGGAGCTTTTCTTTGTGAGTGCCACCTCATCACCAATATTTCCGAGAGAGAAACTCACA
GGCCGATTTTTATGAGACTTGAATAACAGGACTCGCATGCTG
■■Homology search results ■■ -
sp_hit_id Q5FVN8
Definition sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus
Align length 83
Score (bit) 30.8
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916387|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B06.
         (522 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing p...    31   4.1  
sp|P48145|NPBW1_HUMAN Neuropeptides B/W receptor type 1 OS=Homo ...    30   5.3  

>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing
           protein 1 OS=Rattus norvegicus GN=Wdsub1 PE=2 SV=1
          Length = 476

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = -1

Query: 396 HCQPRLQCLNEASKRRAAAYCCNCVPVIYEMKICQGVSAVIHRLLRTSRYITVTETDSDN 217
           HC P L C      +  A+   +   +IY++    G  +V+H L + +RY+T T   + N
Sbjct: 238 HCAPVLACAFSHDGQMLASGSVDKSVIIYDI----GTQSVLHTLTQHTRYVT-TCAFAPN 292

Query: 216 TINNFSGSAFVLGKFVLLKQFHL 148
           T+   +GS   + K V + QF L
Sbjct: 293 TLLLATGS---MDKTVNIWQFDL 312


>sp|P48145|NPBW1_HUMAN Neuropeptides B/W receptor type 1 OS=Homo
           sapiens GN=NPBWR1 PE=1 SV=2
          Length = 328

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 387 PRLQCLNEASKRRAAAYCCNCVPVIYEMKICQ----GVSAVIHRLLRTSRYITVT 235
           P L C N ++     A     VPV+Y + IC     G SAV++ LLR  R  TVT
Sbjct: 19  PALSCSNASTLAPLPAPLAVAVPVVYAV-ICAVGLAGNSAVLYVLLRAPRMKTVT 72
tr_hit_id B4PWJ4
Definition tr|B4PWJ4|B4PWJ4_DROYA GE16600 OS=Drosophila yakuba
Align length 86
Score (bit) 36.2
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916387|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B06.
         (522 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PWJ4|B4PWJ4_DROYA GE16600 OS=Drosophila yakuba GN=GE16600 P...    36   1.0  
tr|B4NCY3|B4NCY3_DROWI GK24998 OS=Drosophila willistoni GN=GK249...    35   1.7  
tr|B6NJT2|B6NJT2_BRAFL Putative uncharacterized protein OS=Branc...    35   2.3  
tr|B6LER8|B6LER8_BRAFL Putative uncharacterized protein OS=Branc...    35   2.3  
tr|B4L5Z1|B4L5Z1_DROMO GI21426 OS=Drosophila mojavensis GN=GI214...    34   3.9  
tr|B3P946|B3P946_DROER GG12774 OS=Drosophila erecta GN=GG12774 P...    34   3.9  
tr|B4I8Z9|B4I8Z9_DROSE GM19051 OS=Drosophila sechellia GN=GM1905...    33   6.6  
tr|Q7R805|Q7R805_PLAYO Asparagine-rich protein (Fragment) OS=Pla...    33   8.5  
tr|Q4YUJ5|Q4YUJ5_PLABE Putative uncharacterized protein (Fragmen...    33   8.5  

>tr|B4PWJ4|B4PWJ4_DROYA GE16600 OS=Drosophila yakuba GN=GE16600 PE=4
            SV=1
          Length = 1644

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
 Frame = -1

Query: 345  AAYCCNCVPVIYEMKI--CQGVSAVIHRLLRTSRYIT--VTETDSDNTINNFS-----GS 193
            ++YCC  +  I E KI  C  +S+ +H LLR S+ ++  V   +    +N+ +     G 
Sbjct: 815  SSYCC-AIDHIDEQKIGCCNELSSEVHNLLRPSQRVSYMVLCDEHKKRLNSHNCCAGCGI 873

Query: 192  AFVLGKFVLLKQFHLFQSQVSKLFDL 115
                GKFVL KQ H F    ++ F L
Sbjct: 874  FCTQGKFVLCKQQHFFHPDCAQRFIL 899


>tr|B4NCY3|B4NCY3_DROWI GK24998 OS=Drosophila willistoni GN=GK24998
            PE=4 SV=1
          Length = 1904

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
 Frame = -1

Query: 345  AAYCCNCVPVIYEMKI--CQGVSAVIHRLLRTSRYI--TVTETDSDNTINNFS-----GS 193
            ++YCC  +  I E KI  C  +SA +H LLR S+ +   +   D    + + +     G 
Sbjct: 1046 SSYCC-AIDNIDEQKIGCCNELSAEVHNLLRPSQRVGYMILCDDHKKRLQSHNCCAGCGI 1104

Query: 192  AFVLGKFVLLKQFHLFQSQVSKLFDL 115
                GKFVL KQ H F    ++ F L
Sbjct: 1105 FCTQGKFVLCKQQHFFHPDCAQRFIL 1130


>tr|B6NJT2|B6NJT2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_95977 PE=4 SV=1
          Length = 1398

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 34  GTLKNVTMIAYAC*GWRPACE-FPSSN-----S*VKQFRYLRLE*MKLLQEHKFAQHKCR 195
           G+L+NVT     C G +P CE FPS N       V  FR L+L        H  A   CR
Sbjct: 638 GSLRNVTNYCVHCTGTKPVCEPFPSVNGDQWGKNVPTFRDLKLS----TDSHSDAYIPCR 693

Query: 196 SRKV 207
           SR+V
Sbjct: 694 SREV 697


>tr|B6LER8|B6LER8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_69699 PE=4 SV=1
          Length = 1341

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 34  GTLKNVTMIAYAC*GWRPACE-FPSSN-----S*VKQFRYLRLE*MKLLQEHKFAQHKCR 195
           G+L+NVT     C G +P CE FPS N       V  FR L+L        H  A   CR
Sbjct: 601 GSLRNVTNYCVHCTGTKPVCEPFPSVNGDQWGKNVPTFRDLKLS----TDSHSDAYVPCR 656

Query: 196 SRKV 207
           SR+V
Sbjct: 657 SREV 660


>tr|B4L5Z1|B4L5Z1_DROMO GI21426 OS=Drosophila mojavensis GN=GI21426
            PE=4 SV=1
          Length = 1905

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = -1

Query: 345  AAYCCNCVPVIYEMKI--CQGVSAVIHRLLRTSR----YITVTETDSDNTINNFSGSAFV 184
            A++CC  +  I E KI  C  +SA +H LLR S+     I   E       +N      +
Sbjct: 1072 ASFCC-AIDNIDEQKIGCCNELSAEVHNLLRPSQRVGYMILCDEHKKRLQAHNCCAGCGI 1130

Query: 183  L---GKFVLLKQFHLFQSQVSKLFDL 115
                GKFVL KQ H F    ++ F L
Sbjct: 1131 FCTQGKFVLCKQQHFFHPDCAQRFIL 1156


>tr|B3P946|B3P946_DROER GG12774 OS=Drosophila erecta GN=GG12774 PE=4
            SV=1
          Length = 1646

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
 Frame = -1

Query: 345  AAYCCNCVPVIYEMKI--CQGVSAVIHRLLRTSRYITVTETDSDNTINNFS-------GS 193
            ++YCC  +  I E KI  C  +S+ +H LLR S+ ++      ++     S       G 
Sbjct: 815  SSYCC-AIDHIDEQKIGCCNELSSEVHNLLRPSQRVSYMILCDEHKKRLHSHNCCAGCGI 873

Query: 192  AFVLGKFVLLKQFHLFQSQVSKLFDL 115
                GKFVL KQ H F    ++ F L
Sbjct: 874  FCTQGKFVLCKQQHFFHPDCAQRFIL 899


>tr|B4I8Z9|B4I8Z9_DROSE GM19051 OS=Drosophila sechellia GN=GM19051
            PE=4 SV=1
          Length = 1619

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
 Frame = -1

Query: 345  AAYCCNCVPVIYEMKI--CQGVSAVIHRLLRTSRYITVTETDSDNTINNFS-------GS 193
            ++YCC  +  I E KI  C  +S+ +H LLR S+ ++      ++     S       G 
Sbjct: 804  SSYCC-AIDHIDEQKIGCCNELSSEVHNLLRPSQRVSYMILCDEHKKRLQSHNCCAGCGI 862

Query: 192  AFVLGKFVLLKQFHLFQSQVSKLFDL 115
                GKFVL KQ H F    ++ F L
Sbjct: 863  FCTQGKFVLCKQQHFFHPDCAQRFIL 888


>tr|Q7R805|Q7R805_PLAYO Asparagine-rich protein (Fragment)
           OS=Plasmodium yoelii yoelii GN=PY07419 PE=4 SV=1
          Length = 459

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 221 ITPLTTFLDLHLCWANLCS*SSFIYSNLRYRNCLT*EL 108
           +TPL  F D +LC  N C  + F++ NL+ +N +  +L
Sbjct: 163 VTPLQIFHDNNLCMNNKCYHNDFLFDNLKIKNSIIMDL 200


>tr|Q4YUJ5|Q4YUJ5_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB000932.02.0 PE=4 SV=1
          Length = 1745

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 221 ITPLTTFLDLHLCWANLCS*SSFIYSNLRYRNCLT*EL 108
           +TPL  F D +LC  N C  + F++ NL+ +N +  +L
Sbjct: 163 VTPLQIFHDNNLCMNNKCYHNDFLFDNLKIKNSIIMDL 200