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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916393
Clone id YMU001_000087_B12
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCAAAGTTCTGCCCAGTATGGGTCTGCTATTAGAGCTTCCAGTCTCAGCACAAGTTCAA
GCATTGTTGTTACCTGGGGAGCTTATTGGGAGGCTGACATCGAGAGTCGTTGCAAGGGCA
ATAAGGAGCTCTGTTGCTAGGGCAGCAGTGAATCTGACAGTGGTACCTGATCAGGGAGCT
TAGTGTGGTTCCGATTATCAAATATGGCAGAGCTCATGGCTTGTGCATGGAGGTGCGCTG
TGATCTCTCCTTGCTGCTGCTGCTGCGTATCGCTAGTGTGCCCTCTTGTTGCTCACTCTC
TTTGGACAATCAGGCAAATCTTGCTTATTGTCCTCCGTTTTGTATCAAATAAAACATCAT
GGTTTCATTAATTGCTCATGAATCAGCATGTGAATGCCGACTAATATTCAATAAAAGTGT
AATCTTATAGAGACACTTCCCTACAAACTTCTGTTTTCTCTTAGCTGCTGTAGCTTTACA
GATCTTGTGACAAGGCATATAGAGGAGCAATCATGCTCATATGAACTTCTATGAA
■■Homology search results ■■ -
sp_hit_id Q94BU1
Definition sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana
Align length 31
Score (bit) 34.3
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916393|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B12.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing pro...    34   0.39 
sp|Q5R8C7|ILDR1_PONAB Immunoglobulin-like domain-containing rece...    31   4.3  
sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing rece...    31   4.3  
sp|A2BQS8|RUVX_PROMS Putative Holliday junction resolvase OS=Pro...    30   9.7  
sp|A3PCK0|RUVX_PROM0 Putative Holliday junction resolvase OS=Pro...    30   9.7  

>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing
           protein kinase At1g71810, chloroplastic OS=Arabidopsis
           thaliana GN=At1g71810 PE=1 SV=1
          Length = 692

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 4   KVLPSMGLLLELPVSAQVQALLLPGELIGRL 96
           ++LP + +L ELP  +Q + L LPG+L+GRL
Sbjct: 648 EMLPILSILPELPQESQQRLLQLPGDLVGRL 678


>sp|Q5R8C7|ILDR1_PONAB Immunoglobulin-like domain-containing
           receptor 1 OS=Pongo abelii GN=ILDR1 PE=2 SV=1
          Length = 546

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 204 YLIIGTTLSSLIRYHCQIHCCPSNRAPY--CPCNDSRCQPPNK 82
           ++I+G  L  L+   C   CCP     Y  CPC  +RC  P +
Sbjct: 173 FIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPARCCCPEE 215


>sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing
           receptor 1 OS=Mus musculus GN=Ildr1 PE=2 SV=2
          Length = 537

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 204 YLIIGTTLSSLIRYHCQIHCCPSNRAPY--CPCNDSRCQPPNK 82
           ++I+G  L  L+   C   CCP     Y  CPC  +RC  P +
Sbjct: 172 FIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPTRCCCPEE 214


>sp|A2BQS8|RUVX_PROMS Putative Holliday junction resolvase
           OS=Prochlorococcus marinus (strain AS9601)
           GN=A9601_08551 PE=3 SV=1
          Length = 153

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 296 LSLD---NQANLAYCPPFCIK*NIMVSLIAHESACECRLIFN 412
           LSLD    +  LAYC P CI  NI+ ++   E+  E ++I N
Sbjct: 12  LSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRN 53


>sp|A3PCK0|RUVX_PROM0 Putative Holliday junction resolvase
           OS=Prochlorococcus marinus (strain MIT 9301)
           GN=P9301_08521 PE=3 SV=1
          Length = 153

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 296 LSLD---NQANLAYCPPFCIK*NIMVSLIAHESACECRLIFN 412
           LSLD    +  LAYC P CI  NI+ ++   E+  E ++I N
Sbjct: 12  LSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRN 53
tr_hit_id B8LLY2
Definition tr|B8LLY2|B8LLY2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 29
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916393|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_B12.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLY2|B8LLY2_PICSI Putative uncharacterized protein OS=Picea...    36   1.1  

>tr|B8LLY2|B8LLY2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 442

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 10  LPSMGLLLELPVSAQVQALLLPGELIGRL 96
           LP + ++LELP+SAQ Q+  LP +L GRL
Sbjct: 400 LPMLSVILELPLSAQQQSFSLPADLAGRL 428