BP916398 |
Clone id |
YMU001_000087_C05 |
Library |
YMU01 |
Length |
568 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000087_C05. |
Accession |
BP916398 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2948Contig1 |
Sequence |
CTGCAAAGTAGCATATTGCTGAGGAAATAAGATAACTTGATTGGCTGGTTAAAGATTTCT GGCACAGAAACTCCCATCTTGCCTTGGTAGCAAGACATGTAGCCCATAAAGATGCACATT TGCATAGTACCCCATCCGTGTTGTGAGAGCTAGATTCACAGCTCCATGCCCTCAAAAATT CTCAGGAATCTTGATTTGCAATAAGAATATTGGACATTAGAACATACCCTGTTAAGTTCC ACCTGTCTGCCCTGATCAGGTTCTCAAACGCACGTTTCCTAAACTCCAAATTCTTCGACA ACGCACATGCTCCCAAAAGAGCAGCCCATACAGCAGGGCTTGGAGAAGATGACAATCTAC CAGCCAATTCTTCGGCTTCGCTTAGCAGACCCGCACGGCCAAGCACATCAACCATGCAAG CGTGGTGCTCTATTGTTGAGTTGAGGGAGTATCTGCTGATCATCAAATCATAGTAGTAAT AGCTCTCAGGGACCAACCCAGCATGACTGCATGCAGTCAAAAGAACTACAAAAGTAAATC CCATTTGGCTTTACACCTTCATGTTGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LW63 |
Definition |
sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana |
Align length |
113 |
Score (bit) |
104.0 |
E-value |
4.0e-22 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PPC3 |
Definition |
tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
112 |
Score (bit) |
111.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916398|Adiantum capillus-veneris mRNA, clone: YMU001_000087_C05. (568 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome... 111 2e-23 tr|A7QFH9|A7QFH9_VITVI Chromosome chr8 scaffold_88, whole genome... 110 5e-23 tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom... 108 3e-22 tr|Q2QTL4|Q2QTL4_ORYSJ Os12g0289800 protein OS=Oryza sativa subs... 107 4e-22 tr|A3CGJ4|A3CGJ4_ORYSJ Putative uncharacterized protein OS=Oryza... 107 4e-22 tr|Q5Z8I7|Q5Z8I7_ORYSJ Os06g0694300 protein OS=Oryza sativa subs... 106 8e-22 tr|Q3LAF9|Q3LAF9_HORVU Pentatricopeptide repeat-containing prote... 105 1e-21 tr|A7R380|A7R380_VITVI Chromosome undetermined scaffold_490, who... 105 2e-21 tr|A7PZU2|A7PZU2_VITVI Chromosome chr15 scaffold_40, whole genom... 105 2e-21 tr|A7PRP6|A7PRP6_VITVI Chromosome chr14 scaffold_27, whole genom... 105 2e-21 tr|Q6YSW0|Q6YSW0_ORYSJ Os07g0299800 protein OS=Oryza sativa subs... 105 2e-21 tr|B4FW77|B4FW77_MAIZE Putative uncharacterized protein OS=Zea m... 105 2e-21 tr|A3AD43|A3AD43_ORYSJ Putative uncharacterized protein OS=Oryza... 105 2e-21 tr|A2YKF2|A2YKF2_ORYSI Putative uncharacterized protein OS=Oryza... 105 2e-21 tr|Q67UW7|Q67UW7_ORYSJ Putative pentatricopeptide (PPR) repeat-c... 104 3e-21 tr|B8AHT0|B8AHT0_ORYSI Putative uncharacterized protein OS=Oryza... 104 3e-21 tr|A7R4G1|A7R4G1_VITVI Chromosome undetermined scaffold_682, who... 104 3e-21 tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genom... 104 3e-21 tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis... 104 3e-21 tr|A5AR37|A5AR37_VITVI Putative uncharacterized protein OS=Vitis... 104 3e-21 tr|A3A370|A3A370_ORYSJ Putative uncharacterized protein OS=Oryza... 104 3e-21 tr|A7PDX6|A7PDX6_VITVI Chromosome chr11 scaffold_13, whole genom... 103 3e-21 tr|Q5ZAF9|Q5ZAF9_ORYSJ Pentatricopeptide (PPR) repeat-containing... 104 4e-21 tr|Q0JLH3|Q0JLH3_ORYSJ Os01g0600400 protein (Fragment) OS=Oryza ... 104 4e-21 tr|B8AB74|B8AB74_ORYSI Putative uncharacterized protein OS=Oryza... 104 4e-21 tr|A5BVF2|A5BVF2_VITVI Putative uncharacterized protein OS=Vitis... 104 4e-21 tr|A2ZV37|A2ZV37_ORYSJ Putative uncharacterized protein OS=Oryza... 104 4e-21 tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 103 5e-21 tr|Q2HSF0|Q2HSF0_MEDTR Tetratricopeptide-like helical OS=Medicag... 103 5e-21 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 103 5e-21
>tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021596001 PE=4 SV=1 Length = 629
Score = 111 bits (278), Expect = 2e-23 Identities = 55/112 (49%), Positives = 73/112 (65%) Frame = -1
Query: 541 GFTFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELA 362 G FV +L+ACSHAGL + YY+ M Y L EH++C+VD+LGRAG L EA +L Sbjct: 361 GAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLI 420
Query: 361 GRLSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNI 206 G +S P AVW ALLGAC + +N+E + AFE +I + N+ YVL+SNI Sbjct: 421 GSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNI 472
>tr|A7QFH9|A7QFH9_VITVI Chromosome chr8 scaffold_88, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037428001 PE=4 SV=1 Length = 534
Score = 110 bits (275), Expect = 5e-23 Identities = 54/116 (46%), Positives = 73/116 (62%) Frame = -1
Query: 541 GFTFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELA 362 G TF+ LL C+HAGLV E Y++ M +SL +IEH+ CMVD+LGRAGLL EA +L Sbjct: 263 GNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLI 322
Query: 361 GRLSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNILIAN 194 + + VW ALLGAC + ++ + + A + LI + WN YVL+SNI AN Sbjct: 323 RNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSAN 378
>tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018905001 PE=4 SV=1 Length = 497
Score = 108 bits (269), Expect = 3e-22 Identities = 52/114 (45%), Positives = 77/114 (67%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 TFV +LTAC+++GLV ++ Y+ LM Y + +I+H++CMVD LGRAGLL EAEEL Sbjct: 324 TFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRN 383
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNILIAN 194 + +P +W++LL AC N+E KRA ++++ D + GYVL+SNI A+ Sbjct: 384 MPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAAS 437
>tr|Q2QTL4|Q2QTL4_ORYSJ Os12g0289800 protein OS=Oryza sativa subsp. japonica GN=Os12g0289800 PE=4 SV=1 Length = 756
Score = 107 bits (268), Expect = 4e-22 Identities = 54/112 (48%), Positives = 70/112 (62%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 T VV+L+ACSHAGL+ E ++++ MI YSL EH+ CMVD+LGRAG L EA EL Sbjct: 553 TLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQG 612
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNILI 200 + P+ VW ALLGAC + KN E A E L + + YVL+SNI + Sbjct: 613 MQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICV 664
>tr|A3CGJ4|A3CGJ4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_034416 PE=4 SV=1 Length = 898
Score = 107 bits (268), Expect = 4e-22 Identities = 54/112 (48%), Positives = 70/112 (62%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 T VV+L+ACSHAGL+ E ++++ MI YSL EH+ CMVD+LGRAG L EA EL Sbjct: 553 TLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQG 612
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNILI 200 + P+ VW ALLGAC + KN E A E L + + YVL+SNI + Sbjct: 613 MQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICV 664
>tr|Q5Z8I7|Q5Z8I7_ORYSJ Os06g0694300 protein OS=Oryza sativa subsp. japonica GN=P0622F03.2 PE=4 SV=1 Length = 648
Score = 106 bits (265), Expect = 8e-22 Identities = 52/111 (46%), Positives = 73/111 (65%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 TF+ +LTACSHAG+V E YY+ M +Y + + +H+ACMVD+LGRAGL+ EA +L Sbjct: 378 TFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRS 437
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNIL 203 +S +P VW ALLGAC + E K E+L + + ++ YVL+SNIL Sbjct: 438 MSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNIL 488
>tr|Q3LAF9|Q3LAF9_HORVU Pentatricopeptide repeat-containing protein OS=Hordeum vulgare GN=ppr PE=4 SV=1 Length = 652
Score = 105 bits (263), Expect = 1e-21 Identities = 58/113 (51%), Positives = 75/113 (66%), Gaps = 3/113 (2%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 + V LL+ACSHAG E Y+ M S Y L T+EH+ACMVD+LGRAG L EA EL Sbjct: 379 SMVALLSACSHAGKYEEGCKYFFAMESTYKLRPTLEHYACMVDLLGRAGRLEEAREL--- 435
Query: 355 LSSSPSPA---VWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNI 206 +SS P PA VW ALLGAC + KN+E + AF+++I + N+ YVLM+N+ Sbjct: 436 ISSMPMPADGSVWGALLGACKIHKNVEAGEEAFKHVIMLEPSNVGYYVLMANM 488
>tr|A7R380|A7R380_VITVI Chromosome undetermined scaffold_490, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00013497001 PE=4 SV=1 Length = 640
Score = 105 bits (262), Expect = 2e-21 Identities = 52/110 (47%), Positives = 71/110 (64%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 TF+ +L+ACSH GLV E + Y+ M Y ++ IEH+ C+VD+LGRAG L EA+EL G Sbjct: 371 TFIGVLSACSHIGLVDEGWTYFTSMSKVYGVSPKIEHYGCVVDILGRAGRLQEAKELIGS 430
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNI 206 + +P VW ALLGAC + KN+E + A NL+ + YVL+SNI Sbjct: 431 MPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNI 480
>tr|A7PZU2|A7PZU2_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027008001 PE=4 SV=1 Length = 1306
Score = 105 bits (262), Expect = 2e-21 Identities = 48/110 (43%), Positives = 71/110 (64%) Frame = -1
Query: 535 TFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELAGR 356 TF LL+AC ++GL+ E + Y+D MI+ Y + +EH+ CMVD+LGRAG L EA +L Sbjct: 1037 TFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHT 1096
Query: 355 LSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNI 206 + P +W ALLG+C + KNL+F + A +NL + + N Y+LM N+ Sbjct: 1097 MPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNL 1146
>tr|A7PRP6|A7PRP6_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022584001 PE=4 SV=1 Length = 535
Score = 105 bits (261), Expect(2) = 2e-21 Identities = 48/112 (42%), Positives = 73/112 (65%) Frame = -1
Query: 541 GFTFVVLLTACSHAGLVPESYYYYDLMISRYSLNSTIEHHACMVDVLGRAGLLSEAEELA 362 G TFV LL+ CSH+GLV E YY+D M S + + T+EH C+VD+LGRAGL+ +A +L Sbjct: 357 GVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLI 416
Query: 361 GRLSSSPSPAVWAALLGACALSKNLEFRKRAFENLIRADRWNLTGYVLMSNI 206 + P+ A+W +LL AC + KN+E + A + LI+ + WN Y+ + ++ Sbjct: 417 SEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWNGALYMTLLSL 468
Score = 20.4 bits (41), Expect(2) = 2e-21 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = -3
Query: 557 GVKPNGIYF 531 GVKPNG+ F Sbjct: 352 GVKPNGVTF 360
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