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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916414
Clone id YMU001_000087_D10
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATGGAGCGCAAGAGCAAGAAACTGTGCAGGAGACACAGTCGAGGAAAGAAAACAAACAA
AAGGACCCTAGATCCACACCTCAGGGGGGAGCAGAAGCGGAGGAAGTACCAGAGAAGCAC
AATGTAATAGAACCAACCCTTGCGGAGGGCACAGATGAGCTGTTACATGAGGACTACGCC
CACAAGTAACCTGCACTGCTATCTTAGAGCCAGATAATAGGCTGACCATCAAGCACATAA
GAGATCAGAAGAGATAGCTGGGATTAGGATCAACTGTAGAAGAGAGACACAAACAAGGTA
GGAAGACAAACAGGAGGACCCCCGATCCACACCTCAAAGAGATGCAAAGTAGTACAAGAT
ATCCAAGACCAGTACCAGGCCAGCCCTCAGCAGGTTACAAGCTGAAACAGCCGCCTTAGA
GTCAAGAGGATAGACTGATCCTCAAGCAGGCATCAAAAGCCAACAAGTGGCAGGGCCCAT
CCTTCGAAGGACAAGCATTCATAAGGAAGCACAAGAAG
■■Homology search results ■■ -
sp_hit_id Q9Y618
Definition sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens
Align length 59
Score (bit) 35.0
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916414|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_D10.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sap...    35   0.21 
sp|O89033|CDC6_MOUSE Cell division control protein 6 homolog OS=...    34   0.47 
sp|P04724|GDA4_WHEAT Alpha/beta-gliadin A-IV OS=Triticum aestivu...    32   1.4  
sp|P18573|GDA9_WHEAT Alpha/beta-gliadin MM1 OS=Triticum aestivum...    32   1.8  
sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE...    32   2.3  
sp|Q9JI55|PLEC1_CRIGR Plectin-1 (Fragment) OS=Cricetulus griseus...    26   3.0  
sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=H...    31   3.0  
sp|P30427|PLEC1_RAT Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1...    26   3.8  
sp|Q5R4J9|NARG1_PONAB NMDA receptor-regulated protein 1 OS=Pongo...    31   4.0  
sp|Q80UM3|NARG1_MOUSE NMDA receptor-regulated protein 1 OS=Mus m...    31   4.0  
sp|Q9BXJ9|NARG1_HUMAN NMDA receptor-regulated protein 1 OS=Homo ...    31   4.0  
sp|Q6CN28|SMI1_KLULA KNR4/SMI1 homolog OS=Kluyveromyces lactis G...    30   5.2  
sp|P36847|FIBP_ADE15 Fiber protein OS=Human adenovirus D serotyp...    30   6.8  
sp|Q5ZJ25|FFR_CHICK Protein fat-free homolog OS=Gallus gallus GN...    30   6.8  
sp|P54742|AFSK_STRGR Serine/threonine-protein kinase afsK OS=Str...    30   6.8  
sp|Q9QXS1|PLEC1_MOUSE Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2     26   8.1  

>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo
           sapiens GN=NCOR2 PE=1 SV=1
          Length = 2517

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  QEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAEGTDELLHEDYAHK 186
           Q+Q+  Q+   R   ++KD +   +   + EE PE  N  E  L E TD+   ED   K
Sbjct: 503 QQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEK 561


>sp|O89033|CDC6_MOUSE Cell division control protein 6 homolog OS=Mus
           musculus GN=Cdc6 PE=2 SV=2
          Length = 562

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 295 KVGRQTGGPP-IHTSKRCKVVQDIQDQYQASPQQVTS*NSRLRVKRID*SSSRHQKPTSG 471
           K+G++  GPP  HT K C++V D +  ++ASP +      + RV++    SS  Q+    
Sbjct: 78  KLGKKENGPPRSHTWKGCRLVFDDEPTFKASPPK-----EQDRVRQHQIRSSSAQRSPES 132

Query: 472 RAHPSK 489
           +A P +
Sbjct: 133 KADPEQ 138


>sp|P04724|GDA4_WHEAT Alpha/beta-gliadin A-IV OS=Triticum aestivum
           PE=2 SV=1
          Length = 297

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 321 PDPHLKEMQSSTRYPRPVPGQPSAGYKLKQPP*SQEDRLILKQASKANKWQ 473
           P P L   Q    YP+P P +P   Y   QP  SQ  + I +Q  +  + Q
Sbjct: 82  PQPQLPYPQPQLPYPQPQPFRPQQSYPQPQPQYSQPQQPISQQQQQQQQQQ 132


>sp|P18573|GDA9_WHEAT Alpha/beta-gliadin MM1 OS=Triticum aestivum
           PE=1 SV=1
          Length = 307

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 321 PDPHLKEMQSSTRYPRPVPGQPSAGYKLKQPP*SQEDRLILKQASKANKWQ 473
           P P L   Q    YP+P P +P   Y   QP  SQ  + I +Q  +  + Q
Sbjct: 89  PQPQLPYPQPQLPYPQPQPFRPQQPYPQSQPQYSQPQQPISQQQQQQQQQQ 139


>sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2
           SV=1
          Length = 918

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 13  EQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIE 132
           E+    + ++ K+ K++DP++ P+   EAEEV +K   +E
Sbjct: 139 EEPNEDKAKAVKKRKKEDPQTPPESLTEAEEVNQKEEQVE 178


>sp|Q9JI55|PLEC1_CRIGR Plectin-1 (Fragment) OS=Cricetulus griseus
            GN=PLEC1 PE=1 SV=1
          Length = 4473

 Score = 25.8 bits (55), Expect(2) = 3.0
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 230  QAHKRSEEIAGIRINCRRETQTR*EDKQEDPRSTPQRDAK*YKISKTSTRPALSRLQAET 409
            +A +++E  A        E +   +  +E  ++  Q  A   K+ K + + A  R QAE 
Sbjct: 2021 EAREQAEREAAQSRKQVEEAERLKQSAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQ 2080

Query: 410  AALESRG*TDPQ 445
            AAL+ +   D +
Sbjct: 2081 AALKQKQAADAE 2092



 Score = 23.9 bits (50), Expect(2) = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 16   QETVQETQSRKENKQKDPRSTPQGGAEAEEVPEK 117
            Q+T+Q+ QS  E  + +  +  +   EAEE  E+
Sbjct: 1992 QQTLQQEQSMLERLRGEAEAARRAAEEAEEAREQ 2025


>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo
            sapiens GN=REV3L PE=1 SV=2
          Length = 3130

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 13   EQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAEGTDELL 165
            +Q+T ++  SRK    KD +   Q GAE + V +  NV E   + G  +LL
Sbjct: 1211 KQKTNEKGTSRKHTTLKDEKIKSQSGAEVKFVLKHQNVSEFASSSGGSQLL 1261


>sp|P30427|PLEC1_RAT Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2
          Length = 4687

 Score = 25.8 bits (55), Expect(2) = 3.8
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 230  QAHKRSEEIAGIRINCRRETQTR*EDKQEDPRSTPQRDAK*YKISKTSTRPALSRLQAET 409
            +A +++E  A        E +   +  +E  ++  Q  A   K+ K + + A  R QAE 
Sbjct: 2235 EAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQ 2294

Query: 410  AALESRG*TDPQ 445
            AAL+ +   D +
Sbjct: 2295 AALKQKQAADAE 2306



 Score = 23.5 bits (49), Expect(2) = 3.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 16   QETVQETQSRKENKQKDPRSTPQGGAEAEEVPEK 117
            Q+T+Q+ Q+  E  + +  +  +   EAEE  E+
Sbjct: 2206 QQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQ 2239


>sp|Q5R4J9|NARG1_PONAB NMDA receptor-regulated protein 1 OS=Pongo
           abelii GN=NARG1 PE=2 SV=1
          Length = 866

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 10  QEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAE 147
           +++   +E Q R + K+KD      GG + E +PEK   +E  L E
Sbjct: 611 EKKNAEKEKQQRNQKKKKDDDDEEIGGPKEELIPEKLAKVETPLEE 656


>sp|Q80UM3|NARG1_MOUSE NMDA receptor-regulated protein 1 OS=Mus
           musculus GN=Narg1 PE=1 SV=1
          Length = 865

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 10  QEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAE 147
           +++   +E Q R + K+KD      GG + E +PEK   +E  L E
Sbjct: 611 EKKNAEKEKQQRNQKKKKDDDDEEIGGPKEELIPEKLAKVETPLEE 656
tr_hit_id B6K9H1
Definition tr|B6K9H1|B6K9H1_TOXGO Eukaryotic translation initiation factor 4E, putative OS=Toxoplasma gondii ME49
Align length 41
Score (bit) 38.5
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916414|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_D10.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K9H1|B6K9H1_TOXGO Eukaryotic translation initiation factor ...    39   0.20 
tr|B8MY35|B8MY35_ASPFL TBC domain protein, putative OS=Aspergill...    35   1.7  
tr|Q59GM0|Q59GM0_HUMAN Nuclear receptor co-repressor 2 variant (...    35   2.2  
tr|Q56D06|Q56D06_HUMAN SMRTE-tau OS=Homo sapiens PE=2 SV=1             35   2.2  
tr|B6K8M3|B6K8M3_TOXGO Leucine rich repeat protein, putative OS=...    34   3.8  
tr|Q66S18|Q66S18_OIKDI Putative uncharacterized protein OS=Oikop...    34   5.0  
tr|A6R2B5|A6R2B5_AJECN Putative uncharacterized protein OS=Ajell...    34   5.0  
tr|Q2QUX2|Q2QUX2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   6.5  
tr|Q8HY15|Q8HY15_LEMCA Poliovirus receptor OS=Lemur catta GN=pvr...    33   6.5  
tr|A5K9I0|A5K9I0_PLAVI Putative uncharacterized protein OS=Plasm...    33   6.5  
tr|B4SRG7|B4SRG7_STRM5 Putative uncharacterized protein OS=Steno...    33   8.5  
tr|B5GRA6|B5GRA6_STRCL AfsR OS=Streptomyces clavuligerus ATCC 27...    33   8.5  
tr|B4GPI9|B4GPI9_DROPE GL13886 OS=Drosophila persimilis GN=GL138...    33   8.5  
tr|B2W3G7|B2W3G7_PYRTR Predicted protein OS=Pyrenophora tritici-...    33   8.5  

>tr|B6K9H1|B6K9H1_TOXGO Eukaryotic translation initiation factor 4E,
           putative OS=Toxoplasma gondii ME49 GN=TGME49_115150 PE=4
           SV=1
          Length = 455

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   DGAQEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHN 123
           +G QE    +E +  KE  +K     P GG EAEE PEK N
Sbjct: 411 EGKQETAANRENEKSKETGKKKATKAPGGGGEAEEAPEKKN 451


>tr|B8MY35|B8MY35_ASPFL TBC domain protein, putative OS=Aspergillus
           flavus NRRL3357 GN=AFLA_079720 PE=4 SV=1
          Length = 827

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
 Frame = +1

Query: 1   DGAQEQETVQETQSRKENKQKDP-----RSTPQGGAEAE--EVPEKHNVIEPTL 141
           D   +QE  QE+++R+E+ +KDP       T Q G EAE  E P + + + P+L
Sbjct: 211 DQNDDQEDTQESRNRQEDNEKDPTPTSTAPTEQNGTEAELLEAPVRRSKLPPSL 264


>tr|Q59GM0|Q59GM0_HUMAN Nuclear receptor co-repressor 2 variant
           (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 1469

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  QEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAEGTDELLHEDYAHK 186
           Q+Q+  Q+   R   ++KD +   +   + EE PE  N  E  L E TD+   ED   K
Sbjct: 521 QQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEK 579


>tr|Q56D06|Q56D06_HUMAN SMRTE-tau OS=Homo sapiens PE=2 SV=1
          Length = 2461

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  QEQETVQETQSRKENKQKDPRSTPQGGAEAEEVPEKHNVIEPTLAEGTDELLHEDYAHK 186
           Q+Q+  Q+   R   ++KD +   +   + EE PE  N  E  L E TD+   ED   K
Sbjct: 502 QQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEK 560


>tr|B6K8M3|B6K8M3_TOXGO Leucine rich repeat protein, putative
            OS=Toxoplasma gondii ME49 GN=TGME49_111650 PE=4 SV=1
          Length = 1710

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 1    DGAQEQETVQETQSRKENKQKDPRSTPQGGAEAEEVP 111
            +GA+E+E V++  S  E+K+++ RS+   G E E  P
Sbjct: 1120 EGAEEEEEVEDEDSEAEDKEEETRSSRTSGEELETAP 1156


>tr|Q66S18|Q66S18_OIKDI Putative uncharacterized protein
           OS=Oikopleura dioica GN=008-38 PE=4 SV=1
          Length = 690

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 20/85 (23%), Positives = 41/85 (48%)
 Frame = +3

Query: 264 LGSTVEERHKQGRKTNRRTPDPHLKEMQSSTRYPRPVPGQPSAGYKLKQPP*SQEDRLIL 443
           L +++E++ K+        P+P  +E+     Y   VPG P+          S   + IL
Sbjct: 297 LSTSLEKKRKKSPTVEEYVPEPVSRELVHDMEYTPGVPGVPARS--------STPAKSIL 348

Query: 444 KQASKANKWQGPSFEGQAFIRKHKK 518
           K++S  +K +  S   ++++ +HK+
Sbjct: 349 KKSSGNDKVRKLSSATESYVERHKR 373


>tr|A6R2B5|A6R2B5_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03773 PE=4 SV=1
          Length = 746

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 234 HIRDQKR*LGLGSTVEERHKQGRKTNRRT-PDPHLKEMQSSTRYPRPVPGQPSAGYKLKQ 410
           +++ Q++ L L    ++  +  +   +R  P P + + QS T  P P PG PS G    Q
Sbjct: 231 NVQQQQQFLALQLAAQQNQQNQQNAQQRGGPQPSMHDGQSGT--PHPQPGPPSQGNTPSQ 288

Query: 411 PP*SQEDRLILKQASKANKWQG 476
           PP  Q+       +S+A   QG
Sbjct: 289 PP--QQSNQQQPPSSQAPPQQG 308


>tr|Q2QUX2|Q2QUX2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g14800 PE=4 SV=2
          Length = 1727

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
 Frame = +3

Query: 201 ILEPDNRLTIKH--IRDQKR*L-------GLGSTVEERHKQGRKTNR-----RTPDPHLK 338
           +++   RL  KH  +   KR L       G     +++  Q R   R     R P P  +
Sbjct: 554 LVDKSLRLEAKHKELESHKRRLANFRNQQGANQRQQQQQPQPRSAPRPQFVVRVPQPQQQ 613

Query: 339 EMQSSTRYPRP--VPGQPSAGYKLKQPP 416
           + Q  TR PRP    GQPS G++  Q P
Sbjct: 614 QSQQGTRVPRPPMPDGQPSQGHRDAQGP 641


>tr|Q8HY15|Q8HY15_LEMCA Poliovirus receptor OS=Lemur catta GN=pvr
           PE=4 SV=1
          Length = 403

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 27/85 (31%), Positives = 38/85 (44%)
 Frame = +3

Query: 177 RPQVTCTAILEPDNRLTIKHIRDQKR*LGLGSTVEERHKQGRKTNRRTPDPHLKEMQSST 356
           RPQ T  A+  P +  T+K +    R +  G         GR   R T  PHL E+ + +
Sbjct: 146 RPQNTAEALKVPPSLFTLKPV-PVARCVSTG---------GRPPARITWSPHLNEIVNES 195

Query: 357 RYPRPVPGQPSAGYKLKQPP*SQED 431
           + P P+PG  +    L   P SQ D
Sbjct: 196 QVPGPLPGTFTVTSLLTVVPSSQVD 220


>tr|A5K9I0|A5K9I0_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_080355 PE=4 SV=1
          Length = 1421

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 2   MERKSKKLCRRHSRGKKTNKRTLDPHLRGEQKRRKYQ 112
           +ERK +KLCR   + KK   R     +R E+K+ K Q
Sbjct: 571 LERKERKLCREEEKEKKNRMREEKKRMREEKKKMKEQ 607