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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916421
Clone id YMU001_000087_E05
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGCAGAAGATGATCGTGCATAACTTTAAATCGAATTGGCAGCAACACGTAGAATTAAAA
GACCACTGTTGTCCTAGACATAGACTTGGGTCCATGAGCGAATCCTATAGGTTTTACCGG
GTCTTTTCTACAAACACAATGACCTCAAACTGCTTGTTGTAGTACTCTTGTCAACAATTA
CATGAGCAAAATGACGCCACCAACTGTATACAGGCTATGCAGTGGTGCACTCCAATATGT
ATGCTCCATGGGCAGGATATCCACCAAAATCTAAAATCTGGCTCAGCAGCAATCAGCTAG
GCTTGCTAAAAGAATTTCCTGTAAATATATTACGACAGTTTGCCTCAATTTCATGTGATT
AAAGAATGTGGCAGCCAATTCCAAATTCCTCGTAAACTTCCGAAGTCCGCACAAAAGTGT
GAGAGTATGGTGCCACAAACAAAAATGAGCCGCTCTTATCCGCCACATGGTAGCTACCTT
AAAAACAACAGGATGCAGGCAAAAGTCTGTGCATCAACTCGGTCATGCCCTCCTTATGCA
AGAATTGACTGTCTTCAAAACGAGAG
■■Homology search results ■■ -
sp_hit_id P11966
Definition sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus
Align length 36
Score (bit) 28.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916421|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E05.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit...    29   4.1  
sp|Q80SS9|MSHR_CHABA Melanocyte-stimulating hormone receptor OS=...    25   5.3  
sp|A8FFQ9|TGT_BACP2 Queuine tRNA-ribosyltransferase OS=Bacillus ...    30   6.4  
sp|Q9ZI86|LNT_PSEAE Apolipoprotein N-acyltransferase OS=Pseudomo...    30   6.4  
sp|Q02SF2|LNT_PSEAB Apolipoprotein N-acyltransferase OS=Pseudomo...    30   6.4  
sp|A6V0C5|LNT_PSEA7 Apolipoprotein N-acyltransferase OS=Pseudomo...    30   6.4  
sp|Q87VX7|LNT_PSESM Apolipoprotein N-acyltransferase OS=Pseudomo...    30   8.3  

>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit
           beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2
          Length = 359

 Score = 28.9 bits (63), Expect(2) = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 213 GYAVVHSNMYAPWAGYPPKSKI---WLSSNQLGLLK 311
           G A  HS  +A W G+ P  K+   W S +  GL+K
Sbjct: 153 GVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIK 188



 Score = 20.4 bits (41), Expect(2) = 4.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 355 VIKECGSQFQIPRKLPKSAQKCESMVP 435
           V+ E    + +P +LP  AQ  + ++P
Sbjct: 198 VVLENELMYGVPFELPSEAQSKDFLIP 224


>sp|Q80SS9|MSHR_CHABA Melanocyte-stimulating hormone receptor
           OS=Chaetodipus baileyi GN=MC1R PE=3 SV=1
          Length = 317

 Score = 25.4 bits (54), Expect(2) = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 435 WHHTLTLLCGLRKFTRNLELAATFFNHMKLR 343
           ++HT  LLC +  F   L L A  + HM  R
Sbjct: 183 YNHTAVLLCLVTFFLATLALMAVLYVHMLAR 213



 Score = 23.5 bits (49), Expect(2) = 5.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 466 VADKSGSFLFVAPYSHTFV 410
           VA  S S LFVA Y+HT V
Sbjct: 170 VASISSSTLFVAYYNHTAV 188


>sp|A8FFQ9|TGT_BACP2 Queuine tRNA-ribosyltransferase OS=Bacillus
           pumilus (strain SAFR-032) GN=tgt PE=3 SV=1
          Length = 381

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 368 VAANSKFLVNFRSPHKSVRVWCHKQK*AALIRHMVATLKTTGCRQKSVHQLGHALLMQE 544
           V  N+K+  +FR   ++   +  K    A IRH++ T +T G R  + H L   L + E
Sbjct: 291 VVKNAKYERDFRPIDENCDCYTCKNYTRAYIRHLIKTNETFGIRLTTYHNLHFLLKLME 349


>sp|Q9ZI86|LNT_PSEAE Apolipoprotein N-acyltransferase OS=Pseudomonas
           aeruginosa GN=lnt PE=3 SV=1
          Length = 511

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 204 LYTGYAVVHSNMYAPWAGYPPKSKIWLSSNQLGLLKEFPVNILRQF 341
           LY GY    S +  P AG  P   +WLSS  + L     VN+ R F
Sbjct: 148 LYAGY----SQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLF 189


>sp|Q02SF2|LNT_PSEAB Apolipoprotein N-acyltransferase OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=lnt PE=3 SV=1
          Length = 511

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 204 LYTGYAVVHSNMYAPWAGYPPKSKIWLSSNQLGLLKEFPVNILRQF 341
           LY GY    S +  P AG  P   +WLSS  + L     VN+ R F
Sbjct: 148 LYAGY----SQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLF 189


>sp|A6V0C5|LNT_PSEA7 Apolipoprotein N-acyltransferase OS=Pseudomonas
           aeruginosa (strain PA7) GN=lnt PE=3 SV=1
          Length = 511

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 204 LYTGYAVVHSNMYAPWAGYPPKSKIWLSSNQLGLLKEFPVNILRQF 341
           LY GY    S +  P AG  P   +WLSS  + L     VN+ R F
Sbjct: 148 LYAGY----SQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLF 189


>sp|Q87VX7|LNT_PSESM Apolipoprotein N-acyltransferase OS=Pseudomonas
           syringae pv. tomato GN=lnt PE=3 SV=1
          Length = 506

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 204 LYTGYAVVHSNMYAPWAGYPPKSKIWLSSNQLGLLKEFPVNILR 335
           LY+GY    S + AP AG  P   +WL S  LGL      N+ R
Sbjct: 148 LYSGY----SQLDAPLAGLAPVGGVWLISFALGLTAALLCNLHR 187
tr_hit_id Q2QTX5
Definition tr|Q2QTX5|Q2QTX5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica
Align length 56
Score (bit) 34.7
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916421|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E05.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QTX5|Q2QTX5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   3.7  
tr|Q16WT7|Q16WT7_AEDAE Crumbs (Fragment) OS=Aedes aegypti GN=AAE...    33   8.3  
tr|B4KQY8|B4KQY8_DROMO GI18581 OS=Drosophila mojavensis GN=GI185...    33   8.3  
tr|B0EF14|B0EF14_ENTDI FYVE, RhoGEF and PH domain-containing pro...    33   8.3  

>tr|Q2QTX5|Q2QTX5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g18190 PE=4 SV=1
          Length = 1011

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -3

Query: 501 CLHPVVFKVATMWRIRAAHFCLWHHT----LTLLCGLRKFTRNLELAATFFNHMKL 346
           CL     K    W  R  H C  H T    L L+CGL K  ++L+L  T   H K+
Sbjct: 551 CLVAKFDKDVMFWHRRLGHVCFDHLTRLSGLDLICGLPKLKKDLDLICTPCRHAKM 606


>tr|Q16WT7|Q16WT7_AEDAE Crumbs (Fragment) OS=Aedes aegypti
           GN=AAEL009093 PE=4 SV=1
          Length = 642

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -1

Query: 215 ACIQLVASFCSCNC*QEYYNKQFEVIVFVEKTR*NL*DSLMDPSLCL---GQQWSFNSTC 45
           +C  LVA F SC C +EY   Q EV   V  T  NL     + S+C+         N TC
Sbjct: 340 SCTDLVAGF-SCECTEEYAGAQCEVFRLV--TCENL--PCKNGSICIDGFNSTTGNNFTC 394

Query: 44  CCQ--FDLKLCTIIFC 3
            C+  F   LC I FC
Sbjct: 395 SCKTGFSGALCDIPFC 410


>tr|B4KQY8|B4KQY8_DROMO GI18581 OS=Drosophila mojavensis GN=GI18581
           PE=4 SV=1
          Length = 219

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 313 NFL*IYYDSLPQFHVIKECGSQFQIPRKLPKSAQKCESMVPQTKMSRSYPPHGSYLKNN 489
           NF  +Y D   ++ +I++   Q Q  +  P+     +    Q    ++YPPH SY +NN
Sbjct: 57  NFELMYSDINNEYFIIQKQKQQQQTQQHTPQQLLTVQHEQQQQHSQQNYPPHNSYNQNN 115


>tr|B0EF14|B0EF14_ENTDI FYVE, RhoGEF and PH domain-containing
           protein, putative OS=Entamoeba dispar SAW760
           GN=EDI_085640 PE=4 SV=1
          Length = 680

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 343 PQFHVIKECGSQFQIPRKLPK-SAQKCESMVPQTKMSRSYPPHGSYLKNNRMQAKVCAST 519
           P  H  + C  QF +P K    S+Q  + +   +++S S PPH S +K   ++     +T
Sbjct: 504 PSHHKTESCQVQFSLPSKPSDLSSQSLKKIQQPSQLSSSEPPHSSTMKQKSLKQDTSITT 563