BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916422|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E06.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7Z417|NUFP2_HUMAN Nuclear fragile X mental retardation-inter...    34   0.23 
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost...    31   1.9  
sp|P23023|DSX_DROME Protein doublesex OS=Drosophila melanogaster...    31   1.9  
sp|Q5F2E7|NUFP2_MOUSE Nuclear fragile X mental retardation-inter...    31   2.5  
sp|Q91998|BRN3_CHICK Brain-specific homeobox/POU domain protein ...    31   2.5  
sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanog...    30   3.3  
sp|A4ZNR4|NKD2_DANRE Protein naked cuticle homolog 2 OS=Danio re...    29   7.3  
sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protei...    29   9.6  
sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A OS=Dicty...    29   9.6  
sp|Q9VVV9|NKD_DROME Protein naked cuticle OS=Drosophila melanoga...    29   9.6  

>sp|Q7Z417|NUFP2_HUMAN Nuclear fragile X mental
           retardation-interacting protein 2 OS=Homo sapiens
           GN=NUFIP2 PE=1 SV=1
          Length = 695

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 20/81 (24%), Positives = 31/81 (38%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXA 84
           QPQ  + H +P           H  H Y+ ++    HH+H    QP   ++H    S  A
Sbjct: 9   QPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKA 68

Query: 83  NIESLSSMSSSHNVEPHDHIP 21
             + L      H ++ H   P
Sbjct: 69  QPKPLKH-EQKHTLQQHQETP 88


>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A
           OS=Dictyostelium discoideum GN=limA PE=2 SV=1
          Length = 1183

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = -3

Query: 260 PQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXAN 81
           P   +HH++      + +      H+ H H P  L H+H   +QP++ ++H +  +   +
Sbjct: 768 PSHHHHHQHSHSQPHSFD------HNQHQHQP--LQHHHHTHSQPIS-IQHQHIENK--H 816

Query: 80  IESLSSMSSSHNVE----PHDHIPPSSS 9
           I+S      SHN++     H H  PS S
Sbjct: 817 IDSPIQHHVSHNIKNSHHQHQHQHPSHS 844


>sp|P23023|DSX_DROME Protein doublesex OS=Drosophila melanogaster
           GN=dsx PE=1 SV=1
          Length = 549

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -3

Query: 251 TYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXANIES 72
           ++HH     +A   +   H +H++H H     HH H    Q  A      P +  +++  
Sbjct: 118 SHHHH----VAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPASHLGG 173

Query: 71  LSSMSSSHNVEPHDH 27
            S+ +SS +   H H
Sbjct: 174 SSTAASSIHGHAHAH 188


>sp|Q5F2E7|NUFP2_MOUSE Nuclear fragile X mental
           retardation-interacting protein 2 OS=Mus musculus
           GN=Nufip2 PE=1 SV=1
          Length = 692

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
 Frame = -3

Query: 263 QPQGTYHHEN------PLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMY 102
           QPQ  +HH +      P +        +H  H Y+ ++    HH+H    QP   ++H  
Sbjct: 7   QPQPQHHHSHHHPHHHPQQQQ---QQQSHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGA 63

Query: 101 PRSNXANIESLSSMSSSHNVEPHDHIP 21
             S  A  + L      H ++ H   P
Sbjct: 64  EGSPKAQPKPLKH-EQKHTLQQHQETP 89


>sp|Q91998|BRN3_CHICK Brain-specific homeobox/POU domain protein 3
           OS=Gallus gallus GN=BRN3 PE=2 SV=1
          Length = 341

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPL-----HHNHQRVAQPL 123
           +P  TYH        ++  SCT    S HLH P  L     HH+H + AQ L
Sbjct: 74  KPDATYH-------TMSSVSCTPTSSSVHLHHPSVLTTHHPHHHHHQPAQGL 118


>sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila
           melanogaster GN=slou PE=2 SV=1
          Length = 659

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = -3

Query: 239 ENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXANIESLSSM 60
           +NP  +A A     H  H +H H   P  H H           H +P  + + +  L + 
Sbjct: 190 QNPQFLAAAQQHMHHHQHQHHQHPAHPHSHQHPHPH------PHPHPHPHPSAVFHLRAP 243

Query: 59  SSSHNVEPHDHIPPSS 12
           SSS    P     P S
Sbjct: 244 SSSSTAPPSPATSPLS 259


>sp|A4ZNR4|NKD2_DANRE Protein naked cuticle homolog 2 OS=Danio rerio
           GN=nkd2 PE=2 SV=1
          Length = 409

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 17/72 (23%), Positives = 26/72 (36%)
 Frame = -3

Query: 242 HENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXANIESLSS 63
           H  P+     +   T + H+ H H P  L H+H R  +  A  +         N  +L  
Sbjct: 329 HHQPISAGQDVYHLTQQSHT-HAHTPSGLQHSHSRRIRSRAREQQALTPVKNTNATALVQ 387

Query: 62  MSSSHNVEPHDH 27
               H+   H H
Sbjct: 388 RHEHHHHHEHHH 399


>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial OS=Arabidopsis thaliana
           GN=At3g07290 PE=2 SV=1
          Length = 880

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 125 LALVKHMYPRSNXANIESLSSMSSSHNVEPHD 30
           LAL +H++P +   ++ S  S+SSS  V  HD
Sbjct: 13  LALGRHVFPSNAFFSVSSRPSLSSSDEVAAHD 44


>sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A
           OS=Dictyostelium discoideum GN=pabp1A PE=3 SV=1
          Length = 814

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = -3

Query: 278 NV*TEQPQGTYHHENPLEMALALNSCTHRIHSYHLHDP-------IPLHHNHQR 138
           +V T+ PQ     +   +  +A    TH +H +H+H         +P HH+H +
Sbjct: 32  SVATQPPQSQIPPQPQYQYQMAPPPQTHHVHPHHVHPHHQQHPGYVPSHHHHHQ 85


>sp|Q9VVV9|NKD_DROME Protein naked cuticle OS=Drosophila
           melanogaster GN=nkd PE=1 SV=3
          Length = 928

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 173 HDPIPLHHNHQRVAQPLALVKHMYPRSNXANIESLSSMSSSHN 45
           H   P HHNH    QP   + H     N A + +  + +++HN
Sbjct: 653 HPTHPSHHNHHEHPQPHIPIYHQQLAINPAVLAAQQTHNTAHN 695

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916422|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E06.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4IGJ4|A4IGJ4_XENTR Pou4f1.2 protein OS=Xenopus tropicalis GN...    37   0.64 
tr|B5ERW3|B5ERW3_ACIF5 Putative uncharacterized protein OS=Acidi...    37   0.64 
tr|A1L3A6|A1L3A6_HUMAN NUFIP2 protein (cDNA FLJ53811, highly sim...    35   1.9  
tr|Q2GRI0|Q2GRI0_CHAGB Predicted protein OS=Chaetomium globosum ...    35   1.9  
tr|A1D3S0|A1D3S0_NEOFI Cyclin-dependent protein kinase regulator...    35   1.9  
tr|B4KIA8|B4KIA8_DROMO GI18193 OS=Drosophila mojavensis GN=GI181...    35   2.4  
tr|A1L3A7|A1L3A7_HUMAN Nuclear fragile X mental retardation prot...    34   3.2  
tr|Q4WJ66|Q4WJ66_ASPFU Cyclin-dependent protein kinase regulator...    34   3.2  
tr|B0XPS7|B0XPS7_ASPFC Cyclin-dependent protein kinase regulator...    34   3.2  
tr|Q9SPJ7|Q9SPJ7_GOSHI Auxin-induced basic helix-loop-helix tran...    34   4.2  
tr|B4MV09|B4MV09_DROWI GK14705 OS=Drosophila willistoni GN=GK147...    34   4.2  
tr|B4JGM1|B4JGM1_DROGR GH19479 OS=Drosophila grimshawi GN=GH1947...    34   4.2  
tr|A1Z8R1|A1Z8R1_DROME CG13188, isoform A OS=Drosophila melanoga...    34   4.2  
tr|B4HWY3|B4HWY3_DROSE GM11259 OS=Drosophila sechellia GN=GM1125...    33   5.4  
tr|A2DGP4|A2DGP4_TRIVA TKL family protein kinase OS=Trichomonas ...    33   9.2  
tr|Q4SN93|Q4SN93_TETNG Chromosome 8 SCAF14543, whole genome shot...    33   9.3  
tr|A7R5P8|A7R5P8_VITVI Chromosome undetermined scaffold_1021, wh...    33   9.3  
tr|B6N8G1|B6N8G1_BRAFL Putative uncharacterized protein OS=Branc...    33   9.3  
tr|Q2H4Y8|Q2H4Y8_CHAGB Predicted protein OS=Chaetomium globosum ...    33   9.3  

>tr|A4IGJ4|A4IGJ4_XENTR Pou4f1.2 protein OS=Xenopus tropicalis
           GN=pou4f1.2 PE=2 SV=1
          Length = 340

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPL------HHNHQRVAQPL--ALVKH 108
           +P  TYH  N +       SCT    S HLH P  L      HH H + +Q L   L++H
Sbjct: 74  KPDATYHTMNSV-------SCTPTSSSVHLHHPSVLTTHHSHHHPHHQPSQGLDSDLLEH 126

Query: 107 MYPRSNXANIESLSSMSSSHNVEPHDHI 24
           + P      +  + S  S     PH H+
Sbjct: 127 LNPALTLGGVPDVGSTPS----HPHAHM 150


>tr|B5ERW3|B5ERW3_ACIF5 Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
           GN=Lferr_1401 PE=4 SV=1
          Length = 164

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 245 HHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXANIESLS 66
           HH   L + L +  C HR H  HL      HHNH R+  P+   + + P+ +   + +  
Sbjct: 6   HH---LALILIIWGCNHR-HRLHL-----AHHNHPRLVLPVD--QALGPQGDHHRVSNRV 54

Query: 65  SMSSSHNVE--PHDHIPPSSSS 6
            + S+HN    P DH+   SSS
Sbjct: 55  DLDSAHNKVRLPEDHLEELSSS 76


>tr|A1L3A6|A1L3A6_HUMAN NUFIP2 protein (cDNA FLJ53811, highly
           similar to Nuclear fragile X
           mentalretardation-interacting protein 2) OS=Homo sapiens
           GN=NUFIP2 PE=4 SV=1
          Length = 120

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/87 (22%), Positives = 33/87 (37%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXA 84
           QPQ  + H +P           H  H Y+ ++    HH+H    QP   ++H    S  A
Sbjct: 9   QPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKA 68

Query: 83  NIESLSSMSSSHNVEPHDHIPPSSSSL 3
             + L      H ++ H   P   + +
Sbjct: 69  QPKPLKH-EQKHTLQQHQETPKKKTEM 94


>tr|Q2GRI0|Q2GRI0_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_09424 PE=4 SV=1
          Length = 400

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = -3

Query: 188 HSYHLH--DPIPLHHNHQRVAQPLALVKHMYPRSNXANIE------SLSSMSSSHNVEPH 33
           H YH H  DP     NHQ    P  ++      +N AN         LS +S S+    H
Sbjct: 65  HQYHQHQQDPPDNQPNHQHAHHPSTILAPPNNNNNNANNNLSHHHSPLSPLSGSNPPHSH 124

Query: 32  DHIPPSSSS 6
              PPSSSS
Sbjct: 125 SQPPPSSSS 133


>tr|A1D3S0|A1D3S0_NEOFI Cyclin-dependent protein kinase regulator
           Pho80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
           3700 / NRRL 181) GN=NFIA_017640 PE=4 SV=1
          Length = 396

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/85 (29%), Positives = 36/85 (42%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXA 84
           QP  ++ H +    A+A  +  H +           HH+++   QP A   H  PRS+  
Sbjct: 27  QPSPSFSHRSTTA-AVAAVTAAHNLR----------HHHYEPARQPPASSSHFSPRSSRL 75

Query: 83  NIESLSSMSSSHNVEPHDHIPPSSS 9
            IE L S  + H VE     PP  S
Sbjct: 76  AIEELRSALTRHTVEAS---PPGPS 97


>tr|B4KIA8|B4KIA8_DROMO GI18193 OS=Drosophila mojavensis GN=GI18193
            PE=4 SV=1
          Length = 2167

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 242  HENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQ-PLALVKHMYPRSNXANIESLS 66
            +EN L      ++ TH  H++H    +  HH  Q   Q P   + H Y R + A+  S S
Sbjct: 844  YENELWPPPTASTPTH--HNHHQQQQLQQHHMQQHQQQLPQQQIHHKYQRHSAASTSS-S 900

Query: 65   SMSSSHNVEP 36
            + S+SH V+P
Sbjct: 901  ASSTSHYVDP 910


>tr|A1L3A7|A1L3A7_HUMAN Nuclear fragile X mental retardation protein
           interacting protein 2 OS=Homo sapiens GN=NUFIP2 PE=2
           SV=1
          Length = 695

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/81 (24%), Positives = 31/81 (38%)
 Frame = -3

Query: 263 QPQGTYHHENPLEMALALNSCTHRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXA 84
           QPQ  + H +P           H  H Y+ ++    HH+H    QP   ++H    S  A
Sbjct: 9   QPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKA 68

Query: 83  NIESLSSMSSSHNVEPHDHIP 21
             + L      H ++ H   P
Sbjct: 69  QPKPLKH-EQKHTLQQHQETP 88


>tr|Q4WJ66|Q4WJ66_ASPFU Cyclin-dependent protein kinase regulator
           Pho80 OS=Aspergillus fumigatus GN=AFUA_1G07070 PE=4 SV=1
          Length = 396

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -3

Query: 155 HHNHQRVAQPLALVKHMYPRSNXANIESLSSMSSSHNVEPHDHIPPSSS 9
           HH+++   QP A   H  PRS+   IE L S  + H VE     PP  S
Sbjct: 52  HHHYEPARQPPASSSHFSPRSSRLAIEELRSALTRHTVEAS---PPEPS 97


>tr|B0XPS7|B0XPS7_ASPFC Cyclin-dependent protein kinase regulator
           Pho80 OS=Aspergillus fumigatus (strain CEA10 / CBS
           144.89 / FGSC A1163) GN=AFUB_007430 PE=4 SV=1
          Length = 396

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -3

Query: 155 HHNHQRVAQPLALVKHMYPRSNXANIESLSSMSSSHNVEPHDHIPPSSS 9
           HH+++   QP A   H  PRS+   IE L S  + H VE     PP  S
Sbjct: 52  HHHYEPARQPPASSSHFSPRSSRLAIEELRSALTRHTVEAS---PPEPS 97


>tr|Q9SPJ7|Q9SPJ7_GOSHI Auxin-induced basic helix-loop-helix
           transcription factor OS=Gossypium hirsutum PE=2 SV=1
          Length = 314

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -3

Query: 197 HRIHSYHLHDPIPLHHNHQRVAQPLALVKHMYPRSNXANIESLSSMSSSHNVEPHDHIPP 18
           H  HS+H H   PLHH+H    +P       +P       E  +   SS +  P   +P 
Sbjct: 11  HHHHSHHHHHQQPLHHHHHHHHRP------TFPFQLLEKKEEDNQPCSSSSSLPFPSLPV 64

Query: 17  SSSS 6
           SSSS
Sbjct: 65  SSSS 68