BP916425 [AcEST]

BP916425
Clone id	YMU001_000087_E09
Library	YMU01
Length	549
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000087_E09.
Accession	BP916425
Tissue type	prothallium
Developmental stage	-
Contig ID	CL3123Contig1
Sequence	GAGTACCTGCGAGAGAGAGAGAAATAGAGATACCTATAGAACATGGAGGGCTACTCTATC AAATAGCCCATGGAGATGGTGTCTGCAACCCAATACATTCTAATAGGTAAAAGTTGTCGA CCTCCAGCACACGACCCTGCAGCAACTCTCCAACTTTTTGTTACCCATGTTTATGTTGCT GCCATTTGGCAATGCAAAATCTTCTCATGAGGCCGTCAATATCAGGCCTACACATGATTA ATAATCGAGACTAAGACTCTGACCCCCTAGGTGGTTGGCTTCATCTTCTTCAGGATATCT TTTTTGCCTTCAACTTGGACATCACACTGTTGTCTGCATCTCAATTGACCAGTGTCAATG ATGGGATCTTGCTGAGGGCCATTAATTGACTCGGTCACTTGGTGGACATGGCCACGTTGG CTGGTTAGAGAGAGAGAGAGAGAGAGGCTATCCTTTCCCTGCCAAAAATTCTTCCTTCAC TTCCTCTTTATTGCTATTTCCTTCCATGCCAAATCGAATGACTATACCCCATTAACGAGA GAGAGAGAG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8RX28
Definition	sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana
Align length	36
Score (bit)	30.0
E-value	7.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP916425\|Adiantum capillus-veneris mRNA, clone: YMU001_000087_E09. (549 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thalia... 30 7.7 >sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1 Length = 660 Score = 30.0 bits (66), Expect = 7.7 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 255 DSDPLGGWLHLLQDIFFAFNLDITLLSASQLTSVND 362 D+D L W H+L + FN D+ LSA ++ND Sbjct: 261 DADYLAAWDHILIPVAREFNPDVIFLSAGFDAAIND 296
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP916425\|Adiantum capillus-veneris mRNA, clone: YMU001_000087_E09. (549 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****