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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916428
Clone id YMU001_000087_E12
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGCAGGGCAGATGAGGTGGGAGACTCGTGTAATTAACATAGAAGGGCTGGAGGATCAGC
AGTTACTTGTTTGCCAGAAGGTCTTCTGGAAAGCCAGAAGCCCACCTTCGAAGGTGGCTC
CATTGTAAACCACTTTTGCAGGTCTCCTCCCAGTGTACAGTTTCTTCTCAATGGTGTTCA
CAATGTGGAAGGGCATATTATGGTCCCCCTCCCCTATTCATCTCTCTCAGCGCCAAGAGA
TGTCGCAGGAGCACACATGAGAAATTAGTGATCTCTCGTGTGCTCGTGTTCATGGTTCTC
ATTTTGAACAACAAGGGTCCTCCCAATTGACATACTTTTTTCTGCAAGTAAGGTATTCTT
TCATTGAGACCAGAGCAAGATCACGCTCTTGCGATTCTTGTGTCAGAGTTGTGATTATAC
ACCAAAGTGGTGGTGCACACAGAGCTGTGAGGATAGCAGCATGTATGTAAAATGCTTAAC
TTCAAGCCTGCAAT
■■Homology search results ■■ -
sp_hit_id Q5U3A8
Definition sp|Q5U3A8|KLRAQ_DANRE KLRAQ motif-containing protein 1 OS=Danio rerio
Align length 62
Score (bit) 34.7
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916428|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E12.
         (479 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5U3A8|KLRAQ_DANRE KLRAQ motif-containing protein 1 OS=Danio ...    35   0.23 
sp|Q9ERC1|MYO16_RAT Myosin-XVI OS=Rattus norvegicus GN=Myo16 PE=...    32   1.1  
sp|P30373|CKR1_CHICK Zinc finger protein CKR1 OS=Gallus gallus P...    31   2.5  
sp|Q8C310|ROBO4_MOUSE Roundabout homolog 4 OS=Mus musculus GN=Ro...    30   5.6  
sp|Q9FRV1|CHIA_SECCE Basic endochitinase A OS=Secale cereale GN=...    30   5.6  
sp|P11955|CHI1_HORVU 26 kDa endochitinase 1 OS=Hordeum vulgare P...    30   5.6  
sp|Q18416|YY42_CAEEL UPF0392 protein C33H5.2 OS=Caenorhabditis e...    29   9.6  
sp|Q05538|CHIC_SOLLC Basic 30 kDa endochitinase OS=Solanum lycop...    29   9.6  
sp|P51613|CHIB_VITVI Basic endochitinase OS=Vitis vinifera GN=CH...    29   9.6  
sp|P52405|CHI3_SOLTU Endochitinase 3 (Fragment) OS=Solanum tuber...    29   9.6  
sp|P52403|CHI1_SOLTU Endochitinase 1 (Fragment) OS=Solanum tuber...    29   9.6  
sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog ...    29   9.6  
sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog ...    29   9.6  
sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog ...    29   9.6  
sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog ...    29   9.6  

>sp|Q5U3A8|KLRAQ_DANRE KLRAQ motif-containing protein 1 OS=Danio
           rerio GN=klraq1 PE=2 SV=1
          Length = 665

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 222 LSQRQEMSQEHT*EISDLSCARVHGSHFEQQGSSQLTYFFLQVRYSFIETRARSRSCDSC 401
           L Q QE +QEH  ++ +LSC   H  H  Q+  + L      +     + R R+  C   
Sbjct: 142 LQQLQEEAQEHQAQLEELSCRHAHTIHTLQEDKATLEVKLQTLEREARDCRVRTEECQQQ 201

Query: 402 VR 407
           +R
Sbjct: 202 LR 203


>sp|Q9ERC1|MYO16_RAT Myosin-XVI OS=Rattus norvegicus GN=Myo16 PE=1
           SV=1
          Length = 1912

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -2

Query: 214 GEGDHNMPFHIVNTIEK---KLYTGRRPAKVVYNGATFEGGLLAFQKTFWQTSNC*SSSP 44
           G+   ++P H+ +  E+   +L+  RRP  ++ +G    G   A ++     ++  SSS 
Sbjct: 463 GQRSPSLPPHLFSCAERAFHRLFQERRPQNIILSGERGSGKTQASKQIMKHLTSRASSSC 522

Query: 43  SMLITRVSHLIC 8
           +M  +R  H IC
Sbjct: 523 TMFDSRFKHAIC 534


>sp|P30373|CKR1_CHICK Zinc finger protein CKR1 OS=Gallus gallus PE=2
           SV=1
          Length = 509

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 43  KGWRISSYLFARRSSGKPEAHLRRWL-HCKPLLQVSSQCTVSSQWCSQCGRAYYGPPPL 216
           +G  ++ +  +   SG+  A LR+       L+Q  S+     Q C++CG+A+   PPL
Sbjct: 236 QGSHLTKHRRSHARSGRTAAPLRKCFGQSSDLVQHRSRAGKKPQRCAECGKAFRAAPPL 294


>sp|Q8C310|ROBO4_MOUSE Roundabout homolog 4 OS=Mus musculus GN=Robo4
           PE=1 SV=2
          Length = 1012

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 50  GGSAVTCLPEGLLESQKPTFEGGSIVNHFCRS----PPSVQFLLNG 175
           GG A+   P+ L+  Q    +G       CRS    PP++++LLNG
Sbjct: 24  GGEALDSPPQILVHPQDQLLQGSGPAKMRCRSSGQPPPTIRWLLNG 69


>sp|Q9FRV1|CHIA_SECCE Basic endochitinase A OS=Secale cereale
           GN=rsca PE=1 SV=1
          Length = 321

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 145 SSQCTVSSQWCSQCGRAYYGPPPLFIS 225
           S+ CT S+QW    G++YYG  P+ +S
Sbjct: 172 SNYCTPSAQWPCAPGKSYYGRGPIQLS 198


>sp|P11955|CHI1_HORVU 26 kDa endochitinase 1 OS=Hordeum vulgare PE=2
           SV=4
          Length = 318

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 145 SSQCTVSSQWCSQCGRAYYGPPPLFIS 225
           S+ CT S+QW    G++YYG  P+ +S
Sbjct: 169 SNYCTPSAQWPCAPGKSYYGRGPIQLS 195


>sp|Q18416|YY42_CAEEL UPF0392 protein C33H5.2 OS=Caenorhabditis
           elegans GN=C33H5.2 PE=2 SV=1
          Length = 507

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 270 DLSCARVHGSHFEQQGSSQLTYFFLQVRY 356
           D++C RV+ +H E++  S +TY++ +  Y
Sbjct: 469 DITCMRVNATHIERETLSPVTYYYAKDPY 497


>sp|Q05538|CHIC_SOLLC Basic 30 kDa endochitinase OS=Solanum
           lycopersicum GN=CHI9 PE=1 SV=1
          Length = 322

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 CTVSSQWCSQCGRAYYGPPPLFIS 225
           CT SSQW    GR Y+G  P+ IS
Sbjct: 168 CTPSSQWPCAPGRKYFGRGPIQIS 191


>sp|P51613|CHIB_VITVI Basic endochitinase OS=Vitis vinifera
           GN=CHIT1B PE=2 SV=1
          Length = 314

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 115 WLHCKPLLQVS--SQCTVSSQWCSQCGRAYYGPPPLFIS 225
           W +C    Q S  + C  S+QW    GR YYG  P+ IS
Sbjct: 145 WGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQIS 183


>sp|P52405|CHI3_SOLTU Endochitinase 3 (Fragment) OS=Solanum
           tuberosum GN=CHTB3 PE=2 SV=1
          Length = 318

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 CTVSSQWCSQCGRAYYGPPPLFIS 225
           CT SSQW    GR Y+G  P+ IS
Sbjct: 164 CTPSSQWPCAPGRKYFGRGPIQIS 187
tr_hit_id A8IXV9
Definition tr|A8IXV9|A8IXV9_BRACM Dehydration-responsive protein-related OS=Brassica campestris
Align length 31
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916428|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_E12.
         (479 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IXV9|A8IXV9_BRACM Dehydration-responsive protein-related OS...    42   0.015
tr|Q9M9E5|Q9M9E5_ARATH F3F9.21 OS=Arabidopsis thaliana PE=4 SV=1       40   0.044
tr|Q9C9Q8|Q9C9Q8_ARATH Putative uncharacterized protein T11I11.1...    40   0.044
tr|Q0WM11|Q0WM11_ARATH Putative uncharacterized protein At1g7824...    40   0.044
tr|B7FM25|B7FM25_MEDTR Putative uncharacterized protein OS=Medic...    40   0.044
tr|Q94BV9|Q94BV9_ARATH At2g03480/T4M8.9 OS=Arabidopsis thaliana ...    40   0.075
tr|Q8H0Z7|Q8H0Z7_ARATH At2g03480/T4M8.9 OS=Arabidopsis thaliana ...    40   0.075
tr|A7P2I7|A7P2I7_VITVI Chromosome chr1 scaffold_5, whole genome ...    39   0.098
tr|A5C386|A5C386_VITVI Putative uncharacterized protein OS=Vitis...    39   0.098
tr|Q9ZQ84|Q9ZQ84_ARATH Expressed protein OS=Arabidopsis thaliana...    39   0.13 
tr|Q3EC77|Q3EC77_ARATH Uncharacterized protein At2g03480.2 OS=Ar...    39   0.13 
tr|Q8GYW9|Q8GYW9_ARATH Putative uncharacterized protein At1g1386...    38   0.29 
tr|Q3EDD1|Q3EDD1_ARATH Uncharacterized protein At1g13860.2 OS=Ar...    38   0.29 
tr|A7NUX8|A7NUX8_VITVI Chromosome chr18 scaffold_1, whole genome...    36   0.83 
tr|Q6Z692|Q6Z692_ORYSJ Os02g0755000 protein OS=Oryza sativa subs...    35   1.9  
tr|A3ABH3|A3ABH3_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A2X9R4|A2X9R4_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|B8LKR7|B8LKR7_PICSI Putative uncharacterized protein OS=Picea...    33   5.4  

>tr|A8IXV9|A8IXV9_BRACM Dehydration-responsive protein-related
           OS=Brassica campestris PE=2 SV=1
          Length = 662

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +3

Query: 9   QMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           Q++WE RVI +E   DQ+LL+CQK F K +S
Sbjct: 631 QLKWEARVIEVESSSDQRLLICQKPFTKRQS 661


>tr|Q9M9E5|Q9M9E5_ARATH F3F9.21 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 767

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 9   QMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           Q++WE RVI +E   +Q+LL+CQK F K +S
Sbjct: 736 QLKWEARVIEVESSSEQRLLICQKPFTKRQS 766


>tr|Q9C9Q8|Q9C9Q8_ARATH Putative uncharacterized protein T11I11.18
           (Fragment) OS=Arabidopsis thaliana GN=T11I11.18 PE=4
           SV=1
          Length = 379

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 9   QMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           Q++WE RVI +E   +Q+LL+CQK F K +S
Sbjct: 348 QLKWEARVIEVESSSEQRLLICQKPFTKRQS 378


>tr|Q0WM11|Q0WM11_ARATH Putative uncharacterized protein At1g78240
           (Fragment) OS=Arabidopsis thaliana GN=At1g78240 PE=2
           SV=1
          Length = 52

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 9   QMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           Q++WE RVI +E   +Q+LL+CQK F K +S
Sbjct: 21  QLKWEARVIEVESSSEQRLLICQKPFTKRQS 51


>tr|B7FM25|B7FM25_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 153

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWK 92
           A Q++WE RVI IE   +++LL+CQK F+K
Sbjct: 120 AAQLKWEARVIEIESNSEEKLLICQKPFFK 149


>tr|Q94BV9|Q94BV9_ARATH At2g03480/T4M8.9 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 394

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           A ++RWE RVI+++   DQ+LLVCQK F K  S
Sbjct: 350 AARVRWEARVIDLQDGSDQRLLVCQKPFIKNNS 382


>tr|Q8H0Z7|Q8H0Z7_ARATH At2g03480/T4M8.9 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 394

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWKARS 101
           A ++RWE RVI+++   DQ+LLVCQK F K  S
Sbjct: 350 AARVRWEARVIDLQDGSDQRLLVCQKPFIKNNS 382


>tr|A7P2I7|A7P2I7_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030070001
           PE=4 SV=1
          Length = 606

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWK 92
           A Q+RWE RVI+++   DQ+LLVCQK F K
Sbjct: 576 ATQIRWEARVIDLQKGTDQRLLVCQKPFLK 605


>tr|A5C386|A5C386_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040645 PE=4 SV=1
          Length = 148

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWK 92
           A Q+RWE RVI+++   DQ+LLVCQK F K
Sbjct: 118 ATQIRWEARVIDLQKGTDQRLLVCQKPFLK 147


>tr|Q9ZQ84|Q9ZQ84_ARATH Expressed protein OS=Arabidopsis thaliana
           GN=At2g03480 PE=2 SV=2
          Length = 380

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   AGQMRWETRVINIEGLEDQQLLVCQKVFWK 92
           A ++RWE RVI+++   DQ+LLVCQK F K
Sbjct: 350 AARVRWEARVIDLQDGSDQRLLVCQKPFIK 379