NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916429
Clone id YMU001_000087_F01
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGATGTGAGTCAACTATGTTGAAGCTGTCTTTGAACTCCCCATGACTCAACTTGAGTAT
TGCCTCCGCTATGCCAAAACTTGGGATTGGTGTTTTGGCACTGGTGTATACTCTTTCCTC
CACTTCTTTAATTGTCTGCTTTCCCATCATTATCCAAGTGCCATATGACATTATATTCTT
AGTAGCATAAGGATCAATTGCGGCCGAACATGTAACCTTGAGCCCTGTTTGTCCACAAAA
ATTGAATTTGATTAATGTGGGATATTTTTCATCTTTGGCTTCTTCCTCATTCTTCCTTTG
ATCTTGAGTTTGTAGAACATCTATTGATGT
■■Homology search results ■■ -
sp_hit_id Q9V0P2
Definition sp|Q9V0P2|PYRH_PYRAB Uridylate kinase OS=Pyrococcus abyssi
Align length 70
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916429|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F01.
         (330 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V0P2|PYRH_PYRAB Uridylate kinase OS=Pyrococcus abyssi GN=py...    33   0.34 
sp|A4FZB7|PYRH_METM5 Uridylate kinase OS=Methanococcus maripalud...    33   0.34 
sp|A6VJ20|PYRH_METM7 Uridylate kinase OS=Methanococcus maripalud...    33   0.45 
sp|Q8VCR7|ABHEB_MOUSE Abhydrolase domain-containing protein 14B ...    31   2.2  
sp|O50116|PYRH_PYRHO Uridylate kinase OS=Pyrococcus horikoshii G...    30   2.9  
sp|Q9JXZ9|NRDR_NEIMB Transcriptional repressor nrdR OS=Neisseria...    30   2.9  
sp|Q9JVW7|NRDR_NEIMA Transcriptional repressor nrdR OS=Neisseria...    30   2.9  
sp|P20302|APRP_ENTHI Antigenic protein P1 (Fragment) OS=Entamoeb...    30   3.8  
sp|A6UQ77|PURA_METVS Adenylosuccinate synthetase OS=Methanococcu...    29   6.4  

>sp|Q9V0P2|PYRH_PYRAB Uridylate kinase OS=Pyrococcus abyssi GN=pyrH
           PE=3 SV=1
          Length = 225

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 330 TSIDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYG--T 157
           T++D + T D RKN    K EK          G++  K   S  IDP A   I+  G  T
Sbjct: 140 TNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKT 199

Query: 156 WIMMGKQTIK 127
           +I+  K  ++
Sbjct: 200 YIIGKKDALR 209


>sp|A4FZB7|PYRH_METM5 Uridylate kinase OS=Methanococcus maripaludis
           (strain C5 / ATCC BAA-1333) GN=pyrH PE=3 SV=1
          Length = 225

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 330 TSIDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNI 172
           T++D + T+D R NE+  K +K  T       G + +    S  +DP A+K I
Sbjct: 141 TNVDGVYTKDPRCNEDAVKLDKINTKELLEITGSSSMSAGSSGVVDPLASKII 193


>sp|A6VJ20|PYRH_METM7 Uridylate kinase OS=Methanococcus maripaludis
           (strain C7 / ATCC BAA-1331) GN=pyrH PE=3 SV=1
          Length = 225

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 330 TSIDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNI 172
           T++D + T+D R NE+  K +K  T       G   +    S  +DP A+K I
Sbjct: 141 TNVDGVYTKDPRCNEDAVKLDKINTKELLEITGSNSMSAGSSGVVDPLASKII 193


>sp|Q8VCR7|ABHEB_MOUSE Abhydrolase domain-containing protein 14B
           OS=Mus musculus GN=Abhd14b PE=2 SV=1
          Length = 210

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +2

Query: 74  PKLGIGVLALVYTLSSTSLIVCFPIIIQVPYDIIFLVA*GSIAAEHVTLSPVCPQKLNLI 253
           P  G  + A+V TL     +V  P +  + Y + FLVA GS     V ++P+C  K+N +
Sbjct: 87  PAPGSFLAAVVDTLELGPPVVISPSLSGM-YSLPFLVAPGSQLRGFVPVAPICTDKINAV 145

Query: 254 N 256
           +
Sbjct: 146 D 146


>sp|O50116|PYRH_PYRHO Uridylate kinase OS=Pyrococcus horikoshii
           GN=pyrH PE=3 SV=2
          Length = 225

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 330 TSIDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYG--T 157
           T++D + T+D +KN    K  K       +   +   K   S  IDP A K IM  G  T
Sbjct: 140 TNVDGVYTEDPKKNPNAKKIPKMKAKDLVDIVSREAGKAGVSTVIDPLAAKIIMRSGIKT 199

Query: 156 WIMMGKQTIK 127
           +++  +  +K
Sbjct: 200 YVIGKEDALK 209


>sp|Q9JXZ9|NRDR_NEIMB Transcriptional repressor nrdR OS=Neisseria
           meningitidis serogroup B GN=nrdR PE=3 SV=1
          Length = 154

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 138 QTIKEVEERVYTSAKTPIPSFGIAEAILK 52
           +T++  E R+YTS +  IPS  +A+ +LK
Sbjct: 86  ETVRLTEHRLYTSGQRDIPSAALADMVLK 114


>sp|Q9JVW7|NRDR_NEIMA Transcriptional repressor nrdR OS=Neisseria
           meningitidis serogroup A GN=nrdR PE=3 SV=1
          Length = 154

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 138 QTIKEVEERVYTSAKTPIPSFGIAEAILK 52
           +T++  E R+YTS +  IPS  +A+ +LK
Sbjct: 86  ETVRLTEHRLYTSGQRDIPSAALADMVLK 114


>sp|P20302|APRP_ENTHI Antigenic protein P1 (Fragment) OS=Entamoeba
           histolytica PE=4 SV=1
          Length = 639

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -1

Query: 234 GQTGLKVTCSAAIDPYATKNIMSYGTWIMMGKQTIKEVEERVYTSAKTPIPSFGIAE 64
           G+T L  T + +IDP AT   +SY     + K  ++ VE+ VY       P FGI E
Sbjct: 385 GRTRLNFTATCSIDPKATS--VSYTIKSGLTKGKLERVEDNVYDYT----PFFGIEE 435


>sp|A6UQ77|PURA_METVS Adenylosuccinate synthetase OS=Methanococcus
           vannielii (strain SB / ATCC 35089 / DSM 1224) GN=purA
           PE=3 SV=1
          Length = 338

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 234 GQTGLKVTCSAAIDPYATKNIMSYGTWIMMGKQTIKEVEERV 109
           G T + +TC    DP     I+ Y      GK  IKEVEE+V
Sbjct: 276 GATQIAITCLDKYDPLCY-GIIDYNELSEKGKAFIKEVEEKV 316
tr_hit_id A1CA04
Definition tr|A1CA04|A1CA04_ASPCL Putative uncharacterized protein OS=Aspergillus clavatus
Align length 74
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916429|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F01.
         (330 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CA04|A1CA04_ASPCL Putative uncharacterized protein OS=Asper...    39   0.17 
tr|Q3ST80|Q3ST80_NITWN Resolvase OS=Nitrobacter winogradskyi (st...    35   2.5  
tr|A7RMK9|A7RMK9_NEMVE Predicted protein OS=Nematostella vectens...    34   4.2  
tr|A8KB17|A8KB17_DANRE Zgc:171453 protein OS=Danio rerio GN=zgc:...    33   5.5  
tr|B5LBL0|B5LBL0_STRPN Putative phosphotransferase LicD3 OS=Stre...    33   9.4  

>tr|A1CA04|A1CA04_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_009950 PE=4 SV=1
          Length = 874

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 258 TLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYGTWIMMGKQTIKEVE--ERVYTSAKTPI 85
           T I+    G      TCS A++ Y  K+ MSY  W++ G   I +    +R +T  ++ I
Sbjct: 185 TTIEDEVDGNENDNATCSMALETYLEKSQMSYEVWLLRGYSNIYDDTNLQRAHTE-ESDI 243

Query: 84  PSFGIAEAILKLSH 43
             FGI ++  K SH
Sbjct: 244 DEFGILKSNYKRSH 257


>tr|Q3ST80|Q3ST80_NITWN Resolvase OS=Nitrobacter winogradskyi
           (strain Nb-255 / ATCC 25391) GN=Nwi_1250 PE=4 SV=1
          Length = 524

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = -1

Query: 324 IDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYGTWIMM 145
           ID L  + ++  +E+A+   +PT     +   TG       A+DP     +     W   
Sbjct: 145 IDNLSEEARKGQQEKAEQGIWPTKTPLGYRNVTGADGRKVIAVDPQVAPIVAKLFEWYAT 204

Query: 144 GKQTIKEVEER------VYTSAKTPIPS 79
           G+  +KEV ++      VY  +  P+P+
Sbjct: 205 GEFALKEVAKKARAAGLVYKKSGAPVPT 232


>tr|A7RMK9|A7RMK9_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g199320 PE=4 SV=1
          Length = 867

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 300 QRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATK----NIMSYGTWI-MMGKQ 136
           QR     + D  Y  +++  +CG  G+ VTCSA +  +  K     IM + TW+ + G+ 
Sbjct: 418 QRSWRGSSIDRYYLCVVRQVWCGGFGVIVTCSATLHSFDVKKLAERIMHFPTWVDLKGQD 477

Query: 135 TIKEVEERV 109
           ++ E    V
Sbjct: 478 SVPETVHHV 486


>tr|A8KB17|A8KB17_DANRE Zgc:171453 protein OS=Danio rerio
           GN=zgc:171453 PE=2 SV=1
          Length = 289

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -1

Query: 294 KNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYGTWIMMGKQTIKEVEE 115
           +N   A D    T +K+   G++GL+V+C            +  GTW+  G Q   E+ E
Sbjct: 53  QNMPSAGDHCLKTGMKYRNLGKSGLRVSC------------LGLGTWVTFGGQITDEIAE 100

Query: 114 RVYTSA 97
           ++ T A
Sbjct: 101 QLMTLA 106


>tr|B5LBL0|B5LBL0_STRPN Putative phosphotransferase LicD3
           OS=Streptococcus pneumoniae GN=licD3 PE=4 SV=1
          Length = 278

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = -1

Query: 327 SIDVLQTQDQRKNEEEAKDEKYPTLIKFNFCGQTGLKVTCSAAIDPYATKNIMSYGTWIM 148
           ++DVL      KN  E K +    LI   FC QT           P     +M +G+ I+
Sbjct: 116 ALDVLPLDYYPKNPAERKKQVRWALIYSLFCAQT----------IPEKHGAVMKWGSRIL 165

Query: 147 MGKQTIKEVEERVYTSAKTPIPSFGIAEA 61
           +G  T K +  R++  A+  +  +G+AE+
Sbjct: 166 LG-LTPKSLRYRIWKKAEKEMTKYGLAES 193