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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916430
Clone id YMU001_000087_F02
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGTTGGCTCTATCGAGTCGACCAAAATCTTTGGAGAAACTACGTT
CTCCAACCTATGAATGATTTCTTGAATTTACCAACGTGGAAGATGGGGTGAACTTGAGAA
CTCTCAGGTAACTTAACTTTATATGCTACGTCCCCATCTTCTTAAGGACTCTAAAGGGAC
TACAAATTTTGAGAGAAAGTTTTTCACTCTTTCTCGTTTTCAAGGTTCTGACTTTGTAGG
AACCTTTAGGAATACAAAGTCACCTTCTACAAAGGTAACTTTTTTTCGTTTTCTTTGTAT
GTATAGGTCTTAGCACAATCCAATGCACTACGAATGCTTTCCTTTTTTGCCTTCATCATA
TCATTTATATCTTCAAAGAAACCCTTGACAGATTGAATCTTCTCTTTCTCTAGGCCTATA
GCCATAGGGGATCTCCATTGGAAACAATACATGAACATGAACATGAATGGTGTAAATCCA
ATTGTTGGCCATGCAGGTACTC
■■Homology search results ■■ -
sp_hit_id Q6EBV9
Definition sp|Q6EBV9|ATG9B_MOUSE Autophagy-related protein 9B OS=Mus musculus
Align length 41
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916430|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F02.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6EBV9|ATG9B_MOUSE Autophagy-related protein 9B OS=Mus muscul...    31   3.4  
sp|Q836N8|GALT_ENTFA Galactose-1-phosphate uridylyltransferase O...    30   4.4  
sp|P53278|YG3A_YEAST Uncharacterized protein YGR130C OS=Saccharo...    30   7.5  

>sp|Q6EBV9|ATG9B_MOUSE Autophagy-related protein 9B OS=Mus musculus
           GN=Atg9b PE=2 SV=1
          Length = 922

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 73  QRGRWGELENSQVT*LYMLRPHLLKDSKGTTNFERKFFTLS 195
           QRGRWG+L  S V  L+M  P      +GT       F+LS
Sbjct: 13  QRGRWGDLGPSSVPLLHMALPLPASPCRGTGGRRISVFSLS 53


>sp|Q836N8|GALT_ENTFA Galactose-1-phosphate uridylyltransferase
           OS=Enterococcus faecalis GN=galT PE=3 SV=1
          Length = 497

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 476 CMANNWIYTIHVHVHVLFPMEIPYG 402
           C  NN+I T  +  +++FPM+ PYG
Sbjct: 120 CKTNNYIKTKAIAKNIIFPMDSPYG 144


>sp|P53278|YG3A_YEAST Uncharacterized protein YGR130C
           OS=Saccharomyces cerevisiae GN=YGR130C PE=1 SV=1
          Length = 816

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = -3

Query: 388 KEKIQSVKGFFEDINDMMKAKKESIRSALDCAKTYTYKE--------NEKKLPL*KVTLY 233
           KEK+Q ++   ++I + MKA +E     ++ +K    K+        N KKL + K T  
Sbjct: 455 KEKLQDLQNQIDEIENSMKAMREETSEKIEVSKNRLVKKIIDVNAEHNNKKLMILKDT-- 512

Query: 232 S*RFLQSQNLENEK 191
                  +N++N+K
Sbjct: 513 -------ENMKNQK 519
tr_hit_id A5BJ41
Definition tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 56
Score (bit) 37.0
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916430|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F02.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis...    37   2e-05
tr|Q9SQW9|Q9SQW9_ARATH Putative retroelement pol polyprotein OS=...    41   6e-05
tr|Q0JE77|Q0JE77_ORYSJ Os04g0316700 protein OS=Oryza sativa subs...    42   1e-04
tr|Q5JPZ2|Q5JPZ2_ORYSA OSJNBa0004L19.22 protein OS=Oryza sativa ...    42   1e-04
tr|Q7XPJ7|Q7XPJ7_ORYSJ OSJNBa0087O24.13 protein OS=Oryza sativa ...    42   1e-04
tr|Q7XUI0|Q7XUI0_ORYSJ OSJNBa0020J04.2 protein OS=Oryza sativa s...    37   2e-04
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   2e-04
tr|Q2QRQ2|Q2QRQ2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   2e-04
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs...    37   2e-04
tr|Q7FAA0|Q7FAA0_ORYSJ OSJNBa0011E07.8 protein OS=Oryza sativa s...    37   2e-04
tr|Q53L81|Q53L81_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   2e-04
tr|Q75H53|Q75H53_ORYSJ Putative reverse transcriptase OS=Oryza s...    37   2e-04
tr|Q10GU5|Q10GU5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   2e-04
tr|Q6AU38|Q6AU38_ORYSJ Putative reverse transcriptase, 3'-partia...    37   2e-04
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s...    37   2e-04
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s...    37   2e-04
tr|Q7XZZ8|Q7XZZ8_ORYSJ Putative polyprotein OS=Oryza sativa subs...    41   2e-04
tr|Q10F38|Q10F38_ORYSJ Retrotransposon protein, putative, unclas...    41   2e-04
tr|Q2QSS9|Q2QSS9_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   2e-04
tr|Q7XKR0|Q7XKR0_ORYSJ OSJNBa0053B21.11 protein OS=Oryza sativa ...    41   3e-04
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   4e-04
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   4e-04
tr|Q10G32|Q10G32_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   4e-04
tr|Q53J53|Q53J53_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   4e-04
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s...    35   4e-04
tr|Q75LZ2|Q75LZ2_ORYSJ Putative polyprotein OS=Oryza sativa subs...    37   5e-04
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s...    37   5e-04
tr|Q01L72|Q01L72_ORYSA H0321H01.8 protein OS=Oryza sativa GN=H03...    40   5e-04
tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   5e-04
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G...    36   5e-04

>tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_044100 PE=4 SV=1
          Length = 1366

 Score = 37.0 bits (84), Expect(2) = 2e-05
 Identities = 18/56 (32%), Positives = 35/56 (62%)
 Frame = -1

Query: 297  VLRPIHTKKTKKSYLCRR*LCIPKGSYKVRTLKTRKSEKLSLKICSPFRVLKKMGT 130
            ++R +H K+T +S+     + +    YK +++  R++ KLS +   P+RVL+K+GT
Sbjct: 1247 IIRILHIKRTARSFNIGDLVYLRLQPYKQQSVVQRRNLKLSPRFYGPYRVLEKIGT 1302



 Score = 34.7 bits (78), Expect(2) = 2e-05
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -3

Query: 136  GDVAYKVKLPESSQVHPIFHVGKFKK 59
            G VAY+++LP  +++HP+FHV   K+
Sbjct: 1301 GTVAYRLELPPEAKIHPVFHVSCLKE 1326


>tr|Q9SQW9|Q9SQW9_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV=1
          Length = 1661

 Score = 40.8 bits (94), Expect(2) = 6e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 136  GDVAYKVKLPESSQVHPIFHVGKFKKS 56
            G VAYK++LPE S +HP+FHV + K++
Sbjct: 1518 GQVAYKLQLPEHSTIHPVFHVSQLKRA 1544



 Score = 28.9 bits (63), Expect(2) = 6e-05
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 219  YKVRTLKTRKSEKLSLKICSPFRVLKKMGT*HIKL 115
            Y+  ++  RK+EKLS +   PF+VL ++G    KL
Sbjct: 1490 YRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKL 1524


>tr|Q0JE77|Q0JE77_ORYSJ Os04g0316700 protein OS=Oryza sativa subsp.
            japonica GN=Os04g0316700 PE=4 SV=1
          Length = 1605

 Score = 41.6 bits (96), Expect(2) = 1e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = -3

Query: 136  GDVAYKVKLPESSQVHPIFHVGKFKK 59
            G VAYK++LPE S +HP+FHV + KK
Sbjct: 1488 GRVAYKLQLPEGSNIHPVFHVSQLKK 1513



 Score = 27.3 bits (59), Expect(2) = 1e-04
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 21/132 (15%)
 Frame = -2

Query: 461  WIYTIHVHVHV-LFPMEIPYGYRPR-------------------EREDSICQGFL*RYK* 342
            W Y    H  + + P +  YGY P                    E++D+I Q    +Y  
Sbjct: 1370 WWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKL--KYSL 1427

Query: 341  YDEGKKGKHS*CIGLC*DLYIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLSKF 165
             +  ++ KH          Y  R R + T   GD V+LK+ P +             SKF
Sbjct: 1428 TEAQRRIKH----------YADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKF 1477

Query: 164  VVPLESLRRWGR 129
              P + + + GR
Sbjct: 1478 YGPFKIMEKVGR 1489


>tr|Q5JPZ2|Q5JPZ2_ORYSA OSJNBa0004L19.22 protein OS=Oryza sativa
            GN=OSJNBa0004L19.22 PE=4 SV=1
          Length = 1586

 Score = 41.6 bits (96), Expect(2) = 1e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = -3

Query: 136  GDVAYKVKLPESSQVHPIFHVGKFKK 59
            G VAYK++LPE S +HP+FHV + KK
Sbjct: 1488 GRVAYKLQLPEGSNIHPVFHVSQLKK 1513



 Score = 27.3 bits (59), Expect(2) = 1e-04
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 21/132 (15%)
 Frame = -2

Query: 461  WIYTIHVHVHV-LFPMEIPYGYRPR-------------------EREDSICQGFL*RYK* 342
            W Y    H  + + P +  YGY P                    E++D+I Q    +Y  
Sbjct: 1370 WWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKL--KYSL 1427

Query: 341  YDEGKKGKHS*CIGLC*DLYIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLSKF 165
             +  ++ KH          Y  R R + T   GD V+LK+ P +             SKF
Sbjct: 1428 TEAQRRIKH----------YADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKF 1477

Query: 164  VVPLESLRRWGR 129
              P + + + GR
Sbjct: 1478 YGPFKIMEKVGR 1489


>tr|Q7XPJ7|Q7XPJ7_ORYSJ OSJNBa0087O24.13 protein OS=Oryza sativa
            subsp. japonica GN=OSJNBa0087O24.13 PE=4 SV=1
          Length = 1311

 Score = 42.4 bits (98), Expect(2) = 1e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -3

Query: 136  GDVAYKVKLPESSQVHPIFHVGKFKK 59
            G VAYK+ LP SSQ+HP+FHV + KK
Sbjct: 1213 GSVAYKLLLPASSQIHPVFHVSQLKK 1238



 Score = 26.2 bits (56), Expect(2) = 1e-04
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 219  YKVRTLKTRKSEKLSLKICSPFRVLKKMGT*HIKL 115
            Y+  +L    S KL  K   PFRVL+++G+   KL
Sbjct: 1185 YRHNSLGLHSSLKLHSKYYGPFRVLERIGSVAYKL 1219


>tr|Q7XUI0|Q7XUI0_ORYSJ OSJNBa0020J04.2 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0020J04.2 PE=4 SV=2
          Length = 1537

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
 Frame = -3

Query: 136  GDVAYKVKLPES-SQVHPIFHVGKFKK 59
            G+VAY+++LPE+ + VHP+FHV + KK
Sbjct: 1000 GEVAYQLQLPENIADVHPVFHVSQLKK 1026



 Score = 31.6 bits (70), Expect(2) = 2e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 284  YIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLS-KFVVPLESLRRWG 132
            Y   +R+ + F EGD+V+LKV P +    KR RVK  L+ ++V P +   R G
Sbjct: 950  YADTRRRNLEFKEGDYVYLKVSPMRGT--KRFRVKGKLAPRYVGPFQITARRG 1000


>tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g28930 PE=4 SV=1
          Length = 1470

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
 Frame = -3

Query: 136  GDVAYKVKLPES-SQVHPIFHVGKFKK 59
            G+VAY+++LPE+ + VHP+FHV + KK
Sbjct: 1368 GEVAYQLQLPENIADVHPVFHVSQLKK 1394



 Score = 31.6 bits (70), Expect(2) = 2e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 284  YIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLS-KFVVPLESLRRWG 132
            Y   +R+ + F EGD+V+LKV P +    KR +VK  L+ ++V P + + R G
Sbjct: 1318 YADTRRRNLEFKEGDYVYLKVSPMRGT--KRFKVKGKLAPRYVGPFQIIARRG 1368


>tr|Q2QRQ2|Q2QRQ2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g26790 PE=4 SV=1
          Length = 1407

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
 Frame = -3

Query: 136  GDVAYKVKLPES-SQVHPIFHVGKFKK 59
            G+VAY+++LPE+ + VHP+FHV + KK
Sbjct: 1305 GEVAYQLQLPENIADVHPVFHVSQLKK 1331



 Score = 31.6 bits (70), Expect(2) = 2e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 284  YIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLS-KFVVPLESLRRWG 132
            Y   +R+ + F EGD+V+LKV P +    KR +VK  L+ ++V P + + R G
Sbjct: 1255 YADTRRRNLEFKEGDYVYLKVSPMRGT--KRFKVKGKLAPRYVGPFQIIARRG 1305


>tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subsp.
            japonica GN=Os07g0444200 PE=4 SV=1
          Length = 1316

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
 Frame = -3

Query: 136  GDVAYKVKLPES-SQVHPIFHVGKFKK 59
            G+VAY+++LPE+ + VHP+FHV + KK
Sbjct: 1214 GEVAYQLQLPENIADVHPVFHVSQLKK 1240



 Score = 31.6 bits (70), Expect(2) = 2e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 284  YIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLS-KFVVPLESLRRWG 132
            Y   +R+ + F EGD+V+LKV P +    KR +VK  L+ ++V P + + R G
Sbjct: 1164 YADTRRRNLEFKEGDYVYLKVSPMRGT--KRFKVKGKLAPRYVGPFQIIARRG 1214


>tr|Q7FAA0|Q7FAA0_ORYSJ OSJNBa0011E07.8 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0011E07.8 PE=4 SV=1
          Length = 1251

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
 Frame = -3

Query: 136  GDVAYKVKLPES-SQVHPIFHVGKFKK 59
            G+VAY+++LPE+ + VHP+FHV + KK
Sbjct: 1149 GEVAYQLQLPENIADVHPVFHVSQLKK 1175



 Score = 31.6 bits (70), Expect(2) = 2e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 284  YIQRKRKKVTFVEGDFVFLKV-PTKSEP*KRERVKNFLS-KFVVPLESLRRWG 132
            Y   +R+ + F EGD+V+LKV P +    KR +VK  L+ ++V P + + R G
Sbjct: 1099 YADTRRRNLEFKEGDYVYLKVSPMRGT--KRFKVKGKLAPRYVGPFQIIARRG 1149