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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916432
Clone id YMU001_000087_F04
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTGCCAATGGGAGTCCAAGGGAGCGCCGTTTTGAGAGAAGTGCGAGTCCTTGACTGGTT
GGCATAAAAGGTTGTCGGTGTGAATTGTGGCAGGCTCAATGTCTCTCTGCAGAAACGTTG
TGATTGCAGCTATGTTGCTTGAACTGGGACTCAGCATTAGTTCCTTGGCTCCATCAAATT
GATATTTTTGTTGCTCTGGTCTGCACTCAAAGTTGGTCTCCTTCAGCTGAAGGCACAACT
TTAACAGCCTTATCTGCATTCTGATGATAAGTTTCTGCTCTGTGTGTCTAGTTTTTGGAC
TCACTACTAAAGTAAGAATCTGTATGATAGGGCTTTCATTGTAGCATTAATTCTCTTTTG
TCAACCAGCTCAAGCTCACTAGGATTTTTGTTGTGTTTTGAGGTGTGCTTCTGCTAGTGG
ATCGGTTTTTGCT
■■Homology search results ■■ -
sp_hit_id P49025
Definition sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus
Align length 91
Score (bit) 32.7
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916432|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F04.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus muscul...    33   0.66 
sp|P83692|GANA_THIHE Arabinogalactan endo-1,4-beta-galactosidase...    32   1.1  
sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapie...    32   1.5  
sp|Q3SFF3|Y2704_THIDA Putative metalloprotease Tbd_2704 OS=Thiob...    30   3.3  
sp|Q2XXR7|VAR2_VARVA AVIToxin-VAR2 OS=Varanus varius PE=2 SV=1         29   7.3  
sp|Q2XXR8|VAR1_VARVA AVIToxin-VAR1 OS=Varanus varius PE=2 SV=1         29   7.3  
sp|Q12LR7|ASTB_SHEDO N-succinylarginine dihydrolase OS=Shewanell...    29   7.3  
sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protei...    29   9.3  
sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related pr...    29   9.6  
sp|P26798|INO2_YEAST Protein INO2 OS=Saccharomyces cerevisiae GN...    29   9.6  
sp|Q5W280|BO8_BOMOR Prokineticin Bo8 OS=Bombina orientalis PE=1 ...    29   9.6  

>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus
            GN=Cit PE=1 SV=3
          Length = 2055

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 21/91 (23%), Positives = 42/91 (46%)
 Frame = -1

Query: 340  NESPIIQILTLVVSPKTRHTEQKLIIRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKE 161
            ++S ++++ T +      H EQKL ++ Q+  L+L LQ +E+        +      A E
Sbjct: 888  DKSRLLELETRLREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAAR-----AALE 942

Query: 160  LMLSPSSSNIAAITTFLQRDIEPATIHTDNL 68
              L  + + +   T   + +I+  T H D +
Sbjct: 943  SQLRQAKTELEETTAEAEEEIQALTAHRDEI 973


>sp|P83692|GANA_THIHE Arabinogalactan endo-1,4-beta-galactosidase
           OS=Thielavia heterothallica PE=1 SV=1
          Length = 332

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
 Frame = -1

Query: 220 ETNFECRPEQQKYQFDG-AKELMLSPSS-----SNIAAITTFLQRDI-----EPATIHTD 74
           ETN+       +Y F    K +  SP       +N+A I + + R +     EPA IH  
Sbjct: 245 ETNWPISCPNPRYSFPSDVKNIPFSPEGQTTFITNVANIVSSVSRGVGLFYWEPAWIHNA 304

Query: 73  NLLCQPVKDSHFSQNGAPLDS 11
           NL      ++ FSQ+G  L S
Sbjct: 305 NLGSSCADNTMFSQSGQALSS 325


>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens
            GN=CIT PE=1 SV=2
          Length = 2027

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/91 (21%), Positives = 42/91 (46%)
 Frame = -1

Query: 340  NESPIIQILTLVVSPKTRHTEQKLIIRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKE 161
            +++ ++++ T +      H EQKL ++ Q+  L+L LQ +E+        +      A E
Sbjct: 847  DKNRLLELETRLREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAAR-----AALE 901

Query: 160  LMLSPSSSNIAAITTFLQRDIEPATIHTDNL 68
              L  + + +   T   + +I+  T H D +
Sbjct: 902  SQLRQAKTELEETTAEAEEEIQALTAHRDEI 932


>sp|Q3SFF3|Y2704_THIDA Putative metalloprotease Tbd_2704
           OS=Thiobacillus denitrificans (strain ATCC 25259)
           GN=Tbd_2704 PE=3 SV=1
          Length = 147

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 124 ITTFLQRDIEPATIHTDNLLCQPVKDSHFSQNGAPLDSHW 5
           + TF   +I PA +  D ++C PV +    + G PL  H+
Sbjct: 64  VLTFEYGEIAPALLGGDVVICAPVVEREAREQGKPLGHHY 103


>sp|Q2XXR7|VAR2_VARVA AVIToxin-VAR2 OS=Varanus varius PE=2 SV=1
          Length = 104

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 265 IRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNI 131
           + + IR +++C  L  +  +C P   K  FDG ++    P   N+
Sbjct: 40  VSLWIRSIRICTPLGSSGEDCHPLSHKVPFDGQRKHHTCPCLPNL 84


>sp|Q2XXR8|VAR1_VARVA AVIToxin-VAR1 OS=Varanus varius PE=2 SV=1
          Length = 104

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 265 IRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNI 131
           + + IR +++C  L  +  +C P   K  FDG ++    P   N+
Sbjct: 40  VSLWIRSIRICTPLGSSGEDCHPLSHKVPFDGQRKHHTCPCLPNL 84


>sp|Q12LR7|ASTB_SHEDO N-succinylarginine dihydrolase OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=astB PE=3 SV=1
          Length = 444

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -1

Query: 112 LQRDIEPATIHTDNLLCQPVKDSHFSQNGAPLDSH 8
           L R IEP T  T N+L    KD HF Q+ A L  H
Sbjct: 136 LHRSIEPIT--TANILKATFKDPHFFQHHAHLPEH 168


>sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protein
           At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2
          Length = 642

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +3

Query: 51  LTGWHKRLSV*IVAGSMSLCRNV----VIAAMLLELGLSISSLAPSN*YFCCSGLHSKLV 218
           L  W+  +S  + +G  S    V    ++   LL   ++I+SL       CC  L  +L 
Sbjct: 363 LISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELH 422

Query: 219 SFS*RHNF--NSLICILMISFCSVC 287
            ++ R+NF   + +C  +I   + C
Sbjct: 423 GYTLRNNFENENFVCTALIDMYAKC 447


>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein
            4 OS=Homo sapiens GN=LRP4 PE=2 SV=2
          Length = 1950

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 93   LPQFTPTTFYANQSRTRTSLK 31
            LP   PTT Y++ +RTRTSL+
Sbjct: 1716 LPNTPPTTLYSSTTRTRTSLE 1736


>sp|P26798|INO2_YEAST Protein INO2 OS=Saccharomyces cerevisiae
           GN=INO2 PE=1 SV=1
          Length = 304

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = -1

Query: 199 PEQQKYQFDGAKELMLSPSSSNIAAITTFLQRDIEPATIHTDNLLCQPVKDSHFSQN 29
           P Q    FD A  L LSPSSS +  ++T     IE      DNL+ Q +  S+ S N
Sbjct: 96  PHQPSMGFDQALGLKLSPSSSGL--LSTNESNAIEQ---FLDNLISQDMMSSNASMN 147
tr_hit_id B7YZU0
Definition tr|B7YZU0|B7YZU0_DROME Pou domain motif 3, isoform B OS=Drosophila melanogaster
Align length 61
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916432|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F04.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YZU0|B7YZU0_DROME Pou domain motif 3, isoform B OS=Drosophi...    35   1.4  
tr|B4QFR0|B4QFR0_DROSI GD10557 OS=Drosophila simulans GN=GD10557...    35   1.4  
tr|B4HRW4|B4HRW4_DROSE GM21028 OS=Drosophila sechellia GN=GM2102...    35   1.4  
tr|B4QYS8|B4QYS8_DROSI GD21379 OS=Drosophila simulans GN=GD21379...    34   4.2  
tr|B4HZ09|B4HZ09_DROSE GM12734 OS=Drosophila sechellia GN=GM1273...    34   4.2  
tr|A9ZIY5|A9ZIY5_COXBU Linear gramicidin synthetase subunit D OS...    33   7.1  
tr|Q6FTS2|Q6FTS2_CANGA Similar to uniprot|P53337 Saccharomyces c...    33   7.1  
tr|A6NVL5|A6NVL5_9BACE Putative uncharacterized protein OS=Bacte...    33   9.3  
tr|A7Q4U9|A7Q4U9_VITVI Chromosome chr10 scaffold_50, whole genom...    33   9.3  
tr|B4N8Q2|B4N8Q2_DROWI GK12103 OS=Drosophila willistoni GN=GK121...    33   9.3  
tr|Q8ZR66|Q8ZR66_SALTY Putative inner membrane protein OS=Salmon...    33   9.3  
tr|Q57S27|Q57S27_SALCH Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5R6X2|B5R6X2_SALG2 Putative exported protein OS=Salmonella g...    33   9.3  
tr|B5QUV2|B5QUV2_SALEP Putative exported protein OS=Salmonella e...    33   9.3  
tr|B5FLP9|B5FLP9_SALDC Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5EYD9|B5EYD9_SALA4 Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B4TA91|B4TA91_SALHS Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B4SXP4|B4SXP4_SALNS Putative inner membrane protein OS=Salmon...    33   9.3  
tr|A9MW29|A9MW29_SALPB Putative uncharacterized protein OS=Salmo...    33   9.3  
tr|B5QCR0|B5QCR0_SALVI Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5PT46|B5PT46_SALHA Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5NY94|B5NY94_SALET Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5NQ55|B5NQ55_SALET Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5MWA5|B5MWA5_SALET Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B5C5K3|B5C5K3_SALET Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B4A681|B4A681_SALNE Putative inner membrane protein OS=Salmon...    33   9.3  
tr|B3YC91|B3YC91_SALET Putative inner membrane protein OS=Salmon...    33   9.3  

>tr|B7YZU0|B7YZU0_DROME Pou domain motif 3, isoform B OS=Drosophila
           melanogaster GN=pdm3 PE=4 SV=1
          Length = 1051

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 419 H*QKHTSKHNKNPSELELVDKRELMLQ*KPYHTDSYFSSESKN*THRAETYHQNADKAVK 240
           H   H+S+ N N  E+E+ D   L+    P H+ S+   +SK+     E Y   A KA  
Sbjct: 43  HHPHHSSRSNNNDDEMEITDGHALLSPPPPSHSHSHSPFDSKDHVKELEFYKNLAAKAAS 102

Query: 239 V 237
           +
Sbjct: 103 L 103


>tr|B4QFR0|B4QFR0_DROSI GD10557 OS=Drosophila simulans GN=GD10557
           PE=4 SV=1
          Length = 1046

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 419 H*QKHTSKHNKNPSELELVDKRELMLQ*KPYHTDSYFSSESKN*THRAETYHQNADKAVK 240
           H   H+S+ N N  E+E+ D   L+    P H+ S+   +SK+     E Y   A KA  
Sbjct: 43  HHPHHSSRSNNNDDEMEITDGHALLSPPPPSHSHSHSPFDSKDHVKELEFYKNLAAKAAS 102

Query: 239 V 237
           +
Sbjct: 103 L 103


>tr|B4HRW4|B4HRW4_DROSE GM21028 OS=Drosophila sechellia GN=GM21028
           PE=4 SV=1
          Length = 1049

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 419 H*QKHTSKHNKNPSELELVDKRELMLQ*KPYHTDSYFSSESKN*THRAETYHQNADKAVK 240
           H   H+S+ N N  E+E+ D   L+    P H+ S+   +SK+     E Y   A KA  
Sbjct: 43  HHPHHSSRSNNNDDEMEITDGHALLSPPPPSHSHSHSPFDSKDHVKELEFYKNLAAKAAS 102

Query: 239 V 237
           +
Sbjct: 103 L 103


>tr|B4QYS8|B4QYS8_DROSI GD21379 OS=Drosophila simulans GN=GD21379 PE=4
            SV=1
          Length = 4229

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -1

Query: 265  IRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNIAAI---TTFLQRDIE 95
            +R+  R+L+L L++ E   +   E       G    + SP SS+ + +      L   + 
Sbjct: 1532 VRLSPRILQLSLEISEQELQLLEEATSQTGSGDSTQVSSPQSSDNSQVGGEKPPLDSSLV 1591

Query: 94   PATIHTDNLLCQPVKDSHFSQNGAP 20
            P ++  +NLL   +KD HF  +  P
Sbjct: 1592 PTSLE-ENLLLLDIKDDHFGPSTCP 1615


>tr|B4HZ09|B4HZ09_DROSE GM12734 OS=Drosophila sechellia GN=GM12734
            PE=4 SV=1
          Length = 3582

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -1

Query: 265  IRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNIAAI---TTFLQRDIE 95
            +R+  R+L+L L++ E   +   E       G    + SP SS+ + +      L   + 
Sbjct: 828  VRLSPRILQLSLEISEQELQLLEEATSQTGSGDSTQVSSPQSSDNSQVGGEKPPLDSSLV 887

Query: 94   PATIHTDNLLCQPVKDSHFSQNGAP 20
            P ++  +NLL   +KD HF  +  P
Sbjct: 888  PTSLE-ENLLLLDIKDDHFGPSTCP 911


>tr|A9ZIY5|A9ZIY5_COXBU Linear gramicidin synthetase subunit D
            OS=Coxiella burnetii RSA 334 GN=COXBURSA334_1521 PE=4
            SV=1
          Length = 1848

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 292  TRHTEQ--KLIIRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNIAAIT 119
            T H EQ  K+II+ QI  L     L +T F+    Q KY F G K L++   + NI  I 
Sbjct: 1281 TSHLEQFKKVIIQHQITTL----WLTKTLFDSLYIQDKYLFSGLKTLLVGGEALNIDLIN 1336

Query: 118  TFLQRDIEPATI 83
              + ++  P  +
Sbjct: 1337 QLISQNQRPCRV 1348


>tr|Q6FTS2|Q6FTS2_CANGA Similar to uniprot|P53337 Saccharomyces
           cerevisiae YGR284c ERV29 OS=Candida glabrata
           GN=CAGL0G00176g PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +3

Query: 84  IVAGSMSLCRNVVIAAMLLELGLSISSLAPSN*YFCCSGLHSKLVSFS*RHNFNSLICIL 263
           ++A S S+ RN    AML EL    S    +  Y   +G    ++ F       S+I IL
Sbjct: 182 LIAFSDSIVRNKTTFAMLPELN---SKDDQTKGYLLLAGRMLIVIMFIAFTFSKSIITIL 238

Query: 264 MISFCSVCLVFGLTTKVRICMIGLSL 341
           +   C+VC   G  TK    M+G  L
Sbjct: 239 ITVVCTVCFAIGYKTKFASIMLGFIL 264


>tr|A6NVL5|A6NVL5_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_02258
           PE=4 SV=1
          Length = 262

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 169 AKELMLSPSSSNIAAITTFLQRDIEPATIHTDNLLCQPVKDSHFSQNGAPLD 14
           A EL    S+S    +T + +  ++   ++ D L C PVKD+  + +  PLD
Sbjct: 107 AAELAAGKSASGKVYLTVYKENTVQFDEVNCDALYCLPVKDAQVTFDSFPLD 158


>tr|A7Q4U9|A7Q4U9_VITVI Chromosome chr10 scaffold_50, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029855001
           PE=4 SV=1
          Length = 781

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/95 (25%), Positives = 46/95 (48%)
 Frame = -1

Query: 316 LTLVVSPKTRHTEQKLIIRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSS 137
           L +  +P  R  E +++   ++R L   LQL++ +  CR    + Q +   ++  S + +
Sbjct: 204 LEISSAPSQRTLEMEVV---ELRRLNKELQLQKRDLSCRLSSTESQLNTLSKVYESDTVA 260

Query: 136 NIAAITTFLQRDIEPATIHTDNLLCQPVKDSHFSQ 32
           NI A  + L+        HT+  LC+ V+D   S+
Sbjct: 261 NIQAEASLLR--------HTNEDLCKQVEDLQMSR 287


>tr|B4N8Q2|B4N8Q2_DROWI GK12103 OS=Drosophila willistoni GN=GK12103
            PE=4 SV=1
          Length = 3552

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = -1

Query: 265  IRMQIRLLKLCLQLKETNFECRPEQQKYQFDGAKELMLSPSSSNIAAITTFLQRDIEPAT 86
            +R+  R+L+L L++  T+ E R  +Q  + +  +   LS   S+  +  T  +R  + AT
Sbjct: 829  VRLAPRVLQLPLEI--TDQELRLLEQTMEVESGQSTELSSPQSSNDSQNTGEKRISDTAT 886

Query: 85   IHTD---NLLCQPVKDSHFSQNGAPL 17
            + +D   N L   +KD HF  +  P+
Sbjct: 887  VQSDLQDNQLLLDIKDDHFGPSTCPV 912