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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916434
Clone id YMU001_000087_F06
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCACTGCTGACTATTTCATTCAAATCAAAGACTGGTCTGCCAGTGACTTCTTTCACAG
GAGCAATCCCTTCAAATTCAGAAGGGACAACCAGAACAGCCTGCCTGGACCCCTCCAAAC
ATTCATTATTGTTATGACTTGGAGTCGAAGTTCTGTGCAGACCTCCCATTACAGAAGACC
TTTCAAGACTTTCAAGACTAGATCCTGATAGAACACTGGCAATACCCTTGCTTTTCATCC
TCTCACAACCATTGCTTTCCCCAACTGCTTCTTGTTGCAAGGCAGGTTGCAAAGAGACTG
CCTTCAAGTTCTCCCTCATGGCTTGCATCGTCCGTGGCTCCACGGGCACACATGTCTGGG
TATCACACTCTCTGGCCCCATCTTTCCTAACATGTGTACGTGGGAAATTTGTCTCAAAGG
TGATGTCATGAGGGTAAAAAGTCATAGCAGAAACAGCTAAGGTTCTCTTGC
■■Homology search results ■■ -
sp_hit_id Q8N7R1
Definition sp|Q8N7R1|YG052_HUMAN POM121-like protein DKFZp564N2472 OS=Homo sapiens
Align length 67
Score (bit) 33.9
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916434|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F06.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N7R1|YG052_HUMAN POM121-like protein DKFZp564N2472 OS=Homo ...    34   0.37 
sp|Q2RWR8|BCHN_RHORT Light-independent protochlorophyllide reduc...    32   1.4  
sp|Q13261|I15RA_HUMAN Interleukin-15 receptor subunit alpha OS=H...    31   3.1  
sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcriptio...    30   4.1  
sp|Q66J01|PGAP1_XENLA GPI inositol-deacylase OS=Xenopus laevis G...    30   5.3  
sp|Q6MMY0|LOLD_BDEBA Lipoprotein-releasing system ATP-binding pr...    30   6.9  
sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens...    30   6.9  

>sp|Q8N7R1|YG052_HUMAN POM121-like protein DKFZp564N2472 OS=Homo
           sapiens PE=2 SV=1
          Length = 307

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 260 PNCFLLQGRLQRDCLQ---VLPHGLHRPWLHGHTCLGITLSGPIFPNMCTWEICLKGDVM 430
           P+  L++ R  +D  +   V+  G  RP L G T LG  LS       C WE C+KG + 
Sbjct: 84  PSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLS-------CAWEGCMKGGLC 136

Query: 431 RVKSHSR 451
           R  +  R
Sbjct: 137 RAWNPGR 143


>sp|Q2RWR8|BCHN_RHORT Light-independent protochlorophyllide
           reductase subunit N OS=Rhodospirillum rubrum (strain
           ATCC 11170 / NCIB 8255) GN=bchN PE=3 SV=1
          Length = 440

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +3

Query: 180 LSRLSRLDPDRTLAIPLL-----FILSQPLLSPTASCCKA-GCKETAFKFSLMACIVRGS 341
           ++R + L P R+ A+P +     F+L+QP L  TA C +A G +  A  F      V G+
Sbjct: 215 IARTAFLPPRRSTALPAIGPKTRFLLAQPFLGDTARCLEARGARRLAAPFPFG---VEGT 271

Query: 342 TG 347
           TG
Sbjct: 272 TG 273


>sp|Q13261|I15RA_HUMAN Interleukin-15 receptor subunit alpha OS=Homo
           sapiens GN=IL15RA PE=1 SV=1
          Length = 267

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 150 VLCRPPITEDLSRLSRLDPDRTLAIPLLFILSQPLLSPTASCCKAGCKETAFKFSLMACI 329
           +L RPP T  ++      P  ++    +++ S  L S     C +G K  A   SL  C+
Sbjct: 21  LLLRPPATRGIT----CPPPMSVEHADIWVKSYSLYSRERYICNSGFKRKAGTSSLTECV 76

Query: 330 VRGSTGTHVWVSHSL 374
           +  +T    W + SL
Sbjct: 77  LNKATNVAHWTTPSL 91


>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription
           subunit 17 OS=Drosophila melanogaster GN=MED17 PE=1 SV=1
          Length = 642

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 151 TSTPSHNNNECLEGSRQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ S    ++VP+E +G+A +K +T +   DL
Sbjct: 225 SSSVSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 267


>sp|Q66J01|PGAP1_XENLA GPI inositol-deacylase OS=Xenopus laevis
            GN=pgap1 PE=2 SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = +3

Query: 12   TISFKSKTGLPVTSFTGAIPSNSEGTTRTACLDPSKHSLLL*LGVEVLCRPPITEDLSRL 191
            ++   S T +     T   PS+ E      CL      L L L + +L  P     L  L
Sbjct: 787  SVKTDSDTNINSNQLTHHQPSSLEIKALDDCLKMHFTILHLNLWIVLLGLPSFIYWLKTL 846

Query: 192  S---RLDPD--RTLAIPLLFILSQPLLSPTASCCKAGCKETAFKFSLMACIVRGSTGT 350
                +LDPD  R  A+ L+FIL   + S T++   + C +TA    L   I+  + GT
Sbjct: 847  RYTIQLDPDPNRVSALVLIFILEILMNSTTSAIKSSVCLKTAAVLQLPLSIIVVAFGT 904


>sp|Q6MMY0|LOLD_BDEBA Lipoprotein-releasing system ATP-binding
           protein lolD OS=Bdellovibrio bacteriovorus GN=lolD PE=3
           SV=1
          Length = 220

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 448 AMTFYPHDITFETNFPRTHVRKDG 377
           A+    HD+TF T FP+ +  KDG
Sbjct: 193 ALVIVTHDLTFATRFPKVYRMKDG 216


>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens
            GN=KIF1A PE=2 SV=2
          Length = 1690

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 218  GNTLAFHPLTTIAFPNCFLLQGRLQRD----CLQVLPHGLHRPWLHGHTCLGITLS 373
            G++ A  PL+    P+        QR+    CL++L H  +R + H H C+  + S
Sbjct: 1424 GSSSASSPLSAEGRPSPLEAPNERQRELAVKCLRLLTHTFNREYTHSHVCVSASES 1479
tr_hit_id Q5CJQ9
Definition tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein OS=Cryptosporidium hominis
Align length 57
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916434|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F06.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein OS=Crypt...    35   1.4  
tr|B4D2K4|B4D2K4_9BACT Gluconate transporter OS=Chthoniobacter f...    35   1.9  
tr|Q9HSV7|Q9HSV7_HALSA Putative uncharacterized protein OS=Halob...    34   4.2  
tr|B0R2I9|B0R2I9_HALS3 Transposase (ISH10) OS=Halobacterium sali...    34   4.2  
tr|A9A0M3|A9A0M3_DESOH Chromosome segregation protein SMC OS=Des...    33   5.5  
tr|O54664|O54664_HALSA Putative uncharacterized protein (Vng6084...    33   9.3  
tr|B0R8G5|B0R8G5_HALS3 Transposase (ISH10) OS=Halobacterium sali...    33   9.3  

>tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.80352 PE=4 SV=1
          Length = 300

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 421 TFETNFPRTHVRKDGARECDTQTCVPVEPRTMQAMRENLKAVSLQPALQQEAVGESN 251
           T ETN P +  +  G R  +TQ C P++  T    +  LKA+ +    +QE +   N
Sbjct: 135 TAETNVPLSPSQVGGKRNKETQICNPIKQNTSNDKKNLLKALKISKKDEQEKLNNQN 191


>tr|B4D2K4|B4D2K4_9BACT Gluconate transporter OS=Chthoniobacter
           flavus Ellin428 GN=CfE428DRAFT_3129 PE=3 SV=1
          Length = 467

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 216 LAIPLLFILSQPLLSPTASCCKAGCKETAFKFSLMA-CIVRGSTGTHVWVSHSLAPSFLT 392
           L IP+ F  +  LLSP     KA  ++T   + LM  C V G T TH  V   + P F+ 
Sbjct: 133 LTIPVFFETTFYLLSPLT---KAVARQTKRNYLLMVMCTVAGGTITHSLVPPCMGPMFVA 189

Query: 393 CVRGKFVSKVMS*G 434
              G  + ++M+ G
Sbjct: 190 VALGVPIGRMMAMG 203


>tr|Q9HSV7|Q9HSV7_HALSA Putative uncharacterized protein
           OS=Halobacterium salinarium GN=VNG0056H PE=4 SV=1
          Length = 468

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVA 291
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  LL  A  VA
Sbjct: 255 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSTLQRCWAHLLREAEDVA 311


>tr|B0R2I9|B0R2I9_HALS3 Transposase (ISH10) OS=Halobacterium
           salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE1094R
           PE=4 SV=1
          Length = 485

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVA 291
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  LL  A  VA
Sbjct: 272 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSTLQRCWAHLLREAEDVA 328


>tr|A9A0M3|A9A0M3_DESOH Chromosome segregation protein SMC
            OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3)
            GN=Dole_1719 PE=4 SV=1
          Length = 1204

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/64 (39%), Positives = 31/64 (48%)
 Frame = +3

Query: 84   GTTRTACLDPSKHSLLL*LGVEVLCRPPITEDLSRLSRLDPDRTLAIPLLFILSQPLLSP 263
            GT      DPSK    L  GVE++  PP  + L+RLS L         + FI S  LL P
Sbjct: 1065 GTGELVLTDPSKP---LETGVEMMVHPP-GKKLTRLSLLSGGEKALSAIAFIFSIFLLKP 1120

Query: 264  TASC 275
            T+ C
Sbjct: 1121 TSFC 1124


>tr|O54664|O54664_HALSA Putative uncharacterized protein (Vng6084h)
           (Vng6442h) OS=Halobacterium salinarium GN=VNG0021H PE=4
           SV=1
          Length = 454

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVAKR 297
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  +L  A   A++
Sbjct: 241 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSNLQRCWAHILREAEDAAEK 299


>tr|B0R8G5|B0R8G5_HALS3 Transposase (ISH10) OS=Halobacterium
           salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE1031F
           PE=4 SV=1
          Length = 474

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVAKR 297
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  +L  A   A++
Sbjct: 261 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSNLQRCWAHILREAEDAAEK 319