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NBDC - LSDB Archive
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BP916440
Clone id YMU001_000087_F12
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTGAAAACAACAATTCACGACGGTGGAGATCAACAGCTTTCTTTTGCTTTGCCTGTGTC
CTTTCAAGGGCATGTTTTATCTTCTGGTACATTTCATCCATAATTTGTACATATTGATCT
GCTTGAAAGATCTTTTCTTTGGTATGCAAAATGGGAGGAACTTTTACATGACCTTCGACA
ATTTCGAAAGGTGCTTTGCCTGTTGAAGAATGCATTGTATTATTGTACGCATACTCAACC
AACAGCAAATACTGCTCCCACTTCGCCTTGTGCTCTGACACATAGCACTTGAGCAGATCC
AAGACAGTAGAATTGGGCTCTTCTGACTGCCCATCTGTCTGTGGATGAAACGACGAAGAA
GACAAGCCAATGTACAAAAGCGAATTCTTCCAG
■■Homology search results ■■ -
sp_hit_id Q9UR07
Definition sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe
Align length 116
Score (bit) 77.4
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916440|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F12.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot...    77   2e-14
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot...    77   2e-14
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot...    77   2e-14
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa...    72   1e-12
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa...    70   3e-12
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra...    55   1e-07
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p...    43   4e-04
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty...    43   6e-04
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ...    43   6e-04
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus...    38   0.018
sp|B0TSQ4|PYRB1_SHEHH Aspartate carbamoyltransferase 1 OS=Shewan...    37   0.040
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    36   0.052
sp|B0TST3|PYRB2_SHEHH Aspartate carbamoyltransferase 2 OS=Shewan...    34   0.20 
sp|B0TPF3|PYRB3_SHEHH Aspartate carbamoyltransferase 3 OS=Shewan...    33   0.57 
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ...    33   0.57 
sp|Q1LTK6|PYRB_BAUCH Aspartate carbamoyltransferase OS=Baumannia...    32   1.3  
sp|Q08CH3|MPND_DANRE MPN domain-containing protein OS=Danio reri...    32   1.3  
sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl...    31   1.7  
sp|Q5JVG8|ZN506_HUMAN Zinc finger protein 506 OS=Homo sapiens GN...    31   1.7  
sp|O75373|ZN737_HUMAN Zinc finger protein 737 OS=Homo sapiens GN...    31   2.2  
sp|Q6ZNG9|KRBA2_HUMAN KRAB-A domain-containing protein 2 OS=Homo...    31   2.2  
sp|P19024|KCNA5_RAT Potassium voltage-gated channel subfamily A ...    30   2.8  
sp|Q6BN88|ATG26_DEBHA Sterol 3-beta-glucosyltransferase OS=Debar...    30   2.8  
sp|Q694C4|ABC3G_MACNG DNA dC->dU-editing enzyme APOBEC-3G OS=Mac...    30   2.8  
sp|Q7YR23|ABC3G_MACMU DNA dC->dU-editing enzyme APOBEC-3G (Fragm...    30   2.8  
sp|Q73JQ7|QUEA_TREDE S-adenosylmethionine:tRNA ribosyltransferas...    30   2.8  
sp|Q5E7U5|PYRB_VIBF1 Aspartate carbamoyltransferase OS=Vibrio fi...    30   2.8  
sp|P22460|KCNA5_HUMAN Potassium voltage-gated channel subfamily ...    30   3.7  
sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain...    30   3.7  
sp|Q9P255|ZN492_HUMAN Zinc finger protein 492 OS=Homo sapiens GN...    30   3.7  

>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
          Length = 1333

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 41/116 (35%), Positives = 60/116 (51%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S  + PQTDGQ+E  N TV  LL+C  S H   W  ++ LV+ +YNN +HS+T   PFEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRREL 12
            V  +      L       + D+  Q   +++Q +K  L     K KK  D+  +E+
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1189


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
          Length = 1333

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 41/116 (35%), Positives = 60/116 (51%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S  + PQTDGQ+E  N TV  LL+C  S H   W  ++ LV+ +YNN +HS+T   PFEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRREL 12
            V  +      L       + D+  Q   +++Q +K  L     K KK  D+  +E+
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1189


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
          Length = 1333

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 41/116 (35%), Positives = 60/116 (51%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S  + PQTDGQ+E  N TV  LL+C  S H   W  ++ LV+ +YNN +HS+T   PFEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRREL 12
            V  +      L       + D+  Q   +++Q +K  L     K KK  D+  +E+
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEI 1189


>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
          Length = 1498

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            SS+ HPQTDGQSE    T+  LL+ YVS +   W  YL  +E+ YN+T   + GK+PFEI
Sbjct: 1286 SSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEI 1345

Query: 179  VEGHVKVPPILHTKEKI----FQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRREL 12
              G++   P + + +++    F A +  + +  +  + K  LE  Q + +   +  R+ L
Sbjct: 1346 DLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPL 1405

Query: 11   LFS 3
            L +
Sbjct: 1406 LLN 1408


>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
          Length = 1547

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            SS+ HPQTDGQSE    T+  LL+ Y S +   W  YL  +E+ YN+T   + GK+PFEI
Sbjct: 1260 SSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEI 1319

Query: 179  VEGHVKVPPILHTKEKI----FQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRREL 12
              G++   P + + +++    F A +  + +  +  + K  LE  Q + +   +  R+ L
Sbjct: 1320 DLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPL 1379

Query: 11   LFS 3
            L +
Sbjct: 1380 LLN 1382


>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
            transposon 412 OS=Drosophila melanogaster GN=POL PE=4
            SV=1
          Length = 1237

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
 Frame = -3

Query: 365  LSSSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPF 186
            ++S++ H QT G  E  + T+ + ++ Y+S  K  W+ +L    Y +N T        P+
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPY 1112

Query: 185  EIVEGHVKVPP----ILHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRR 18
            E+V G     P     LH+ E I+  D Y        ++ K+ LE   A+ +K ++ H+ 
Sbjct: 1113 ELVFGRTSNLPKHFNKLHSIEPIYNIDDYA-------KESKYRLEVAYARARKLLEAHKE 1165

Query: 17   E 15
            +
Sbjct: 1166 K 1166


>sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol
            PE=3 SV=1
          Length = 1156

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/99 (24%), Positives = 48/99 (48%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+ +HPQ+ G+ E  NS +  LL   +     KW   +  V+ A NNT   ST   P ++
Sbjct: 961  STPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQL 1020

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEMYQKIKHALE 63
            + G     P  +     +  ++ + ++ E+ + ++H ++
Sbjct: 1021 MFGIDCNLPFANKDTLDWTREEELALLQEIRESLQHPVQ 1059


>sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3
            (strain LK3) GN=pol PE=3 SV=2
          Length = 1143

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 44/90 (48%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+ +HPQ+ G+ E  NS +  LL   +    AKW   L +V+ A NN+   S+   P ++
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEM 90
            + G     P  ++       ++ + ++ E+
Sbjct: 1019 LFGIDSNTPFANSDTLDLSREEELSLLQEI 1048


>sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1
            GN=pol PE=1 SV=3
          Length = 1149

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 44/90 (48%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+ +HPQ+ G+ E  NS +  LL   +    AKW   L +V+ A NN+   S+   P ++
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEM 90
            + G     P  ++       ++ + ++ E+
Sbjct: 1019 LFGVDSNTPFANSDTLDLSREEELSLLQEI 1048


>sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus
            GN=pol PE=1 SV=2
          Length = 1143

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 22/96 (22%), Positives = 41/96 (42%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+ +HPQ+  + E  NS +  LL   +     KW   L +V+ A NNT        P ++
Sbjct: 960  STPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQL 1019

Query: 179  VEGHVKVPPILHTKEKIFQADQYVQIMDEMYQKIKH 72
            + G     P  +        ++ + ++ E+   + H
Sbjct: 1020 LFGIDSNTPFANQDTLDLTREEELSLLQEIRTSLYH 1055
tr_hit_id A5C9A7
Definition tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 120
Score (bit) 92.0
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916440|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_F12.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis...    92   1e-17
tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa GN=...    87   3e-16
tr|Q7XG23|Q7XG23_ORYSJ Retrotransposon protein, putative, Ty3-gy...    87   3e-16
tr|Q84KB0|Q84KB0_CUCME Pol protein OS=Cucumis melo PE=4 SV=1           86   9e-16
tr|B5G4Y0|B5G4Y0_TRIMO Putative gag-pol polyprotein OS=Triticum ...    86   1e-15
tr|Q949K9|Q949K9_CICAR Putative polyprotein (Fragment) OS=Cicer ...    85   2e-15
tr|A4PUT7|A4PUT7_MEDTR Polynucleotidyl transferase, Ribonuclease...    85   2e-15
tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein OS=...    85   2e-15
tr|Q6UUR9|Q6UUR9_ORYSJ Putative gag-pol protein OS=Oryza sativa ...    84   3e-15
tr|Q0J6I3|Q0J6I3_ORYSJ Os08g0317200 protein OS=Oryza sativa subs...    84   3e-15
tr|A5BLY2|A5BLY2_VITVI Putative uncharacterized protein OS=Vitis...    84   3e-15
tr|Q8RU68|Q8RU68_ORYSA Putative 22 kDa kafirin cluster; Ty3-Gyps...    83   8e-15
tr|Q8H7X5|Q8H7X5_ORYSJ Putative retroelement (Retrotransposon pr...    83   8e-15
tr|Q7G6A5|Q7G6A5_ORYSJ Putative 22 kDa kafirin cluster; Ty3-Gyps...    83   8e-15
tr|Q8SA91|Q8SA91_MAIZE Putative gag-pol polyprotein OS=Zea mays ...    82   1e-14
tr|A5C2E1|A5C2E1_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|A5BSE9|A5BSE9_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|A5BA10|A5BA10_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|Q8L7J3|Q8L7J3_MAIZE Gag-pol polyprotein OS=Zea mays PE=4 SV=1       82   2e-14
tr|A5B925|A5B925_VITVI Putative uncharacterized protein OS=Vitis...    82   2e-14
tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa GN=...    81   2e-14
tr|Q7XW39|Q7XW39_ORYSJ OSJNBb0062H02.17 protein (OSJNBa0054D14.1...    81   2e-14
tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    81   2e-14
tr|A5CAD1|A5CAD1_VITVI Putative uncharacterized protein OS=Vitis...    81   2e-14
tr|A5ASY8|A5ASY8_VITVI Putative uncharacterized protein OS=Vitis...    81   2e-14
tr|A5AQU5|A5AQU5_VITVI Putative uncharacterized protein OS=Vitis...    81   2e-14
tr|Q94BM2|Q94BM2_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE...    81   3e-14
tr|Q94BM1|Q94BM1_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE...    81   3e-14
tr|Q9ZPG1|Q9ZPG1_ARATH F5K24.7 protein (Putative reverse transcr...    80   4e-14

>tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_020633 PE=4 SV=1
          Length = 1852

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            SS++HPQTDGQ+E  N  +   L+C+V +   KW  YL   EY YN T H STG  PF+ 
Sbjct: 969  SSAYHPQTDGQTEVVNRCLEQYLRCFVHQWPRKWFSYLSWAEYWYNTTYHCSTGMTPFQA 1028

Query: 179  VEGHV--KVPPILHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
            + GH+   +P       ++ + DQ +   DE+ Q++K  LE    + K  VD  RRE+ F
Sbjct: 1029 LYGHLPPSIPHYADGLSRVNEVDQSLLTRDEVLQQLKTNLELAATRMKHVVDQKRREVEF 1088


>tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa
            GN=OSJNBa0034E23.18 PE=4 SV=1
          Length = 2447

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
 Frame = -3

Query: 365  LSSSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPF 186
            L S++ HPQTDGQ+E  N T+  +L+  + ++   WE+ L  +E+AYN ++HS+T   PF
Sbjct: 1353 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPF 1412

Query: 185  EIVEGHVKVPPI----LHTKEKI-FQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHR 21
            +IV G +   PI    L + EK+ F A Q  ++M ++++  K  +ER  AK K A D  R
Sbjct: 1413 QIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGR 1472

Query: 20   RELLF 6
            REL F
Sbjct: 1473 RELTF 1477



 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+++HPQTDGQ+E  N  + D+L   V +    W++ L   E++YNN+  +S   AP+E 
Sbjct: 2177 STAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEA 2236

Query: 179  VEGHVKVPPILHT---KEKIFQADQYVQIMDEMYQKIK---HALERTQAKQKKAVDLHRR 18
            + G     P+L     + ++F  D    I+ E   K++     L+  Q++QK   D  RR
Sbjct: 2237 LYGRKCRTPLLWDQVGESQVFGTD----ILREAEAKVRTIWDNLKVAQSRQKSYADNRRR 2292

Query: 17   ELLFS 3
             L F+
Sbjct: 2293 NLEFA 2297


>tr|Q7XG23|Q7XG23_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g16560 PE=4 SV=1
          Length = 2447

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
 Frame = -3

Query: 365  LSSSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPF 186
            L S++ HPQTDGQ+E  N T+  +L+  + ++   WE+ L  +E+AYN ++HS+T   PF
Sbjct: 1353 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPF 1412

Query: 185  EIVEGHVKVPPI----LHTKEKI-FQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHR 21
            +IV G +   PI    L + EK+ F A Q  ++M ++++  K  +ER  AK K A D  R
Sbjct: 1413 QIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGR 1472

Query: 20   RELLF 6
            REL F
Sbjct: 1473 RELTF 1477



 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+++HPQTDGQ+E  N  + D+L   V +    W++ L   E++YNN+  +S   AP+E 
Sbjct: 2177 STAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEA 2236

Query: 179  VEGHVKVPPILHT---KEKIFQADQYVQIMDEMYQKIK---HALERTQAKQKKAVDLHRR 18
            + G     P+L     + ++F  D    I+ E   K++     L+  Q++QK   D  RR
Sbjct: 2237 LYGRKCRTPLLWDQVGESQVFGTD----ILREAEAKVRTIWDNLKVAQSRQKSYADNRRR 2292

Query: 17   ELLFS 3
             L F+
Sbjct: 2293 NLEFA 2297


>tr|Q84KB0|Q84KB0_CUCME Pol protein OS=Cucumis melo PE=4 SV=1
          Length = 923

 Score = 85.9 bits (211), Expect = 9e-16
 Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S++FHPQTDGQ+E  N  + D+L+    E    W+ +L L+E+AYNN+  ++ G APFE 
Sbjct: 663  STAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA 722

Query: 179  VEGHVKVPPIL--HTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
            + G     P+      E+     + VQ  +E  QKI+  +   Q++QK   D+ R++L F
Sbjct: 723  LYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEF 782


>tr|B5G4Y0|B5G4Y0_TRIMO Putative gag-pol polyprotein OS=Triticum
            monococcum subsp. aegilopoides GN=gag-pol PE=4 SV=1
          Length = 1704

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
 Frame = -3

Query: 365  LSSSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPF 186
            L S++ HPQTDGQ+E  N T+  +L+  +  +K  WE+ L  +E+AYN ++HS+T   PF
Sbjct: 1397 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPF 1456

Query: 185  EIVEGHVKVPPI----LHTKEKI-FQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHR 21
            EIV G +   PI    L + EK+ F A +  +++ ++++  K  +ER  AK K A D  R
Sbjct: 1457 EIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGR 1516

Query: 20   RELLFS 3
            + ++F+
Sbjct: 1517 KHVVFA 1522


>tr|Q949K9|Q949K9_CICAR Putative polyprotein (Fragment) OS=Cicer
           arietinum GN=pol PE=4 SV=1
          Length = 655

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
 Frame = -3

Query: 359 SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
           SS++HPQTDGQ+E  N ++ DLL+  V + +  W+  L L+E+ YNN+ H+S G AP++ 
Sbjct: 489 SSAYHPQTDGQTERTNQSLEDLLRACVLDDRGSWDHVLPLIEFTYNNSFHTSIGMAPYQA 548

Query: 179 VEGHVKVPPILHTK--EKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
           + G     P+   K  E +    + VQ      +KIK  ++ +Q +QK   D  RR L F
Sbjct: 549 LYGRKCQTPLCWYKDGENMIVGPEMVQQTTAKVKKIKEKMKTSQDRQKSYADKRRRLLEF 608


>tr|A4PUT7|A4PUT7_MEDTR Polynucleotidyl transferase, Ribonuclease H
           fold (Fragment) OS=Medicago truncatula
           GN=MtrDRAFT_AC144805g31v2 PE=4 SV=1
          Length = 665

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
 Frame = -3

Query: 359 SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
           SS++HPQTDGQSE    ++ DLL+  V E    W+ +L L+E+ YNN+ HSS G APFE 
Sbjct: 406 SSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEA 465

Query: 179 VEGHVKVPPI--LHTKEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
           + G     P+    + E++    + VQ   E  + I+  ++ +Q++QK   D  R++L F
Sbjct: 466 LYGRRCRTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKASQSRQKSYHDNRRKDLEF 525


>tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g04670 PE=2 SV=1
          Length = 1411

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
 Frame = -3

Query: 359  SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
            S+++HPQTDGQSE    T+ D+L+  V +    W  +L LVE+AYNN+  +S G APFE 
Sbjct: 1147 STAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEA 1206

Query: 179  VEGHVKVPPILHT--KEKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
            + G     P+  T  +E+      YVQ   E  + +K  ++  QA+Q+   D  RREL F
Sbjct: 1207 LYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEF 1266


>tr|Q6UUR9|Q6UUR9_ORYSJ Putative gag-pol protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0079I01.17 PE=4 SV=1
          Length = 552

 Score = 84.0 bits (206), Expect = 3e-15
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
 Frame = -3

Query: 359 SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
           S++FHPQTDGQSE    T+ D+L+  V   K  WE +L LVE+AYNN+  +S   APFE 
Sbjct: 287 STAFHPQTDGQSERTIQTLEDMLRACVLSWKGNWEDHLALVEFAYNNSYQASIKMAPFEA 346

Query: 179 VEGHVKVPPILHTK--EKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
           + G   V P+      E+     + V+   +  Q+I   +   Q++QK   D  RR+L F
Sbjct: 347 LYGRKCVSPLCWESLGERALLGPEIVEQTSKKVQEIGQNMLAAQSRQKSYADTRRRDLEF 406

Query: 5   S 3
           +
Sbjct: 407 A 407


>tr|Q0J6I3|Q0J6I3_ORYSJ Os08g0317200 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0317200 PE=4 SV=1
          Length = 365

 Score = 84.0 bits (206), Expect = 3e-15
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
 Frame = -3

Query: 359 SSSFHPQTDGQSEEPNSTVLDLLKCYVSEHKAKWEQYLLLVEYAYNNTMHSSTGKAPFEI 180
           S++FHPQTDGQSE    T+ D+L+  V   K  WE +L LVE+AYNN+  +S   APFE 
Sbjct: 76  STAFHPQTDGQSERTIQTLEDMLRACVLSWKGNWEDHLALVEFAYNNSYQASIKMAPFEA 135

Query: 179 VEGHVKVPPILHTK--EKIFQADQYVQIMDEMYQKIKHALERTQAKQKKAVDLHRRELLF 6
           + G   V P+      E+     + V+   +  Q+I   +   Q++QK   D  RR+L F
Sbjct: 136 LYGRKCVSPLCWESLGERALLGPEIVEQTSKKVQEIGQNMLAAQSRQKSYADTRRRDLEF 195

Query: 5   S 3
           +
Sbjct: 196 A 196