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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916450
Clone id YMU001_000087_G10
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAACGAGATAAACCAGATGATGAATCTCTGGCAAAGAGACTGCTGGATTTCTTTTCTTCT
CTTAGTGTCATTTTGTTATCAGGATGTCGTGCAGACATAGCGCTGATTTTGACAATGTAC
AATGATCAATATTCAAGATATCAGGTCGAACGTCTGGCGAGGAACTGCTTTTTTTTCTTA
GAACAATCGATACCGTTTGACAGTATGACATTTGGTGTCTATCCACACCTTGAAACGTAT
GCTTTTGGCGAACCCAGACCTGTAACTTATTTGTTTGAGCTGAAGCCACCTTCAGCAGGG
CAACATGGAGACTACTTCTGGCTGCTTCAGCAGGCTTTTAATGACTAAACACAAGTAAAA
CTTTTTTTGAAAGTGTGTACAAGGACAGATCGTTACTGACTAGTGAGAGTAGAGTTGAGC
AACTTTAGTGCATGACCACAAACAAGTGGTGGTAGATTTGATGGGGTTCTCAACATTAGG
GATAATGTGTGTG
■■Homology search results ■■ -
sp_hit_id Q1EHT7
Definition sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica
Align length 107
Score (bit) 70.9
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916450|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_G10.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein ...    71   3e-12
sp|Q03496|YM8B_YEAST Uncharacterized protein YMR259C OS=Saccharo...    32   1.6  
sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus norv...    30   4.6  
sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis thal...    30   6.0  
sp|P10252|CD48_RAT CD48 antigen OS=Rattus norvegicus GN=Cd48 PE=...    30   7.8  
sp|O29069|Y1199_ARCFU Uncharacterized protein AF_1199 OS=Archaeo...    30   7.9  

>sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4
            OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1
          Length = 1007

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = +1

Query: 7    DKPDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFL 180
            D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CF FL
Sbjct: 890  DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 949

Query: 181  EQSIPFDSMTFGVYPHLETYAFG--EPRPVTYLFELKPPSAGQHGDY 315
             +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 950  GESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 996


>sp|Q03496|YM8B_YEAST Uncharacterized protein YMR259C OS=Saccharomyces
            cerevisiae GN=YMR259C PE=1 SV=1
          Length = 1420

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 34   KRLLDFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFLEQSIPF 198
            K+ +D F+S  V+       ++ L L  Y ++Y  +  E  A+NC F +E+   F
Sbjct: 1273 KKFVDVFTSSEVV------EELCLQLFQYLNEYDMFAAEESAKNCLFTIEKDNQF 1321


>sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus
           norvegicus GN=Tep1 PE=1 SV=1
          Length = 2629

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 220 RHQMSYCQTVSIVLRKKSSSSPDVRPDILNIDHCT 116
           +H  S C  VS++LRK    SP++ P+ + +  CT
Sbjct: 816 QHVNSKCLFVSVLLRKMQYMSPNLNPNDVTLSGCT 850


>sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis
           thaliana GN=ARF1 PE=2 SV=2
          Length = 665

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -1

Query: 352 VFSH*KPAEAARSSLHVALLKVASAQTNKLQVWVRQKHTFQGVDRHQMSYCQTVSIVLRK 173
           +FS       +RS   V++ +   A+T KL V +R K  F+G +  +  +  T+  V   
Sbjct: 259 IFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQEN 318

Query: 172 KSS 164
           KSS
Sbjct: 319 KSS 321


>sp|P10252|CD48_RAT CD48 antigen OS=Rattus norvegicus GN=Cd48 PE=1
           SV=1
          Length = 240

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 285 ATFSRATWRXXXXXXXXXXXXNTSKTFFESVYKDR 389
           A++ R TW             N  KT FESV+KDR
Sbjct: 49  ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 83


>sp|O29069|Y1199_ARCFU Uncharacterized protein AF_1199
           OS=Archaeoglobus fulgidus GN=AF_1199 PE=3 SV=1
          Length = 447

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
 Frame = +1

Query: 22  ESLAKRLLDFFSSLSVILLSGCRADIALILTMYNDQYSR----------YQVERLARNCF 171
           +S AK + D +S   V L+  C  D+A+I     D+Y            Y++ R A+   
Sbjct: 278 KSSAKIIRDPYSGKPVTLIPACFPDVAIIHVHRADKYGNAQIDGILVEDYELARAAKRLI 337

Query: 172 FFLEQSIPFDSM 207
              E+ +P D +
Sbjct: 338 VTTEEIVPTDKI 349
tr_hit_id O22243
Definition tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A OS=Arabidopsis thaliana
Align length 106
Score (bit) 74.3
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916450|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_G10.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A OS=...    74   3e-12
tr|B8ABU4|B8ABU4_ORYSI Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|A2ZRF0|A2ZRF0_ORYSJ Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|A7Q0B7|A7Q0B7_VITVI Chromosome chr7 scaffold_42, whole genome...    67   5e-10
tr|A7SGA9|A7SGA9_NEMVE Predicted protein OS=Nematostella vectens...    33   9.5  

>tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A
            OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2
          Length = 1015

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +1

Query: 40   LLDFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFLEQSIPFDSMTFGV 219
            L +FF  +++ LL      I ++LTM N ++S  QVE+LAR  FFFL +S P DS +FG 
Sbjct: 911  LQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESFPHDSESFGA 970

Query: 220  YPHLETYAFGEP----RPVTYLFELKPPSAGQHGDYFWLLQQAFND 345
            +   +T    +P    RP++Y+F L PPS  Q G+Y  LL+++ ++
Sbjct: 971  FQ--DTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLHN 1014


>tr|B8ABU4|B8ABU4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_01237 PE=4 SV=1
          Length = 821

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = +1

Query: 7    DKPDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFL 180
            D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CF FL
Sbjct: 704  DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 763

Query: 181  EQSIPFDSMTFGVYPHLETYAFG--EPRPVTYLFELKPPSAGQHGDY 315
             +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 764  GESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 810


>tr|A2ZRF0|A2ZRF0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_001122 PE=4 SV=1
          Length = 1031

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = +1

Query: 7    DKPDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFL 180
            D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CF FL
Sbjct: 914  DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 973

Query: 181  EQSIPFDSMTFGVYPHLETYAFG--EPRPVTYLFELKPPSAGQHGDY 315
             +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 974  GESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 1020


>tr|A7Q0B7|A7Q0B7_VITVI Chromosome chr7 scaffold_42, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00027989001
            PE=4 SV=1
          Length = 996

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
 Frame = +1

Query: 49   FFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFFFLEQSIPFDSMTFGVYPH 228
            FF  L+V +L+     + +ILTM N ++S+ QVE+L R+CFFFL+ S PFD  +FG    
Sbjct: 894  FFECLAVRILADAMYQVQVILTMKNIRFSQLQVEKLGRDCFFFLKCSFPFDESSFGELTD 953

Query: 229  LET--YAFGEPRPVTYLFELKPPSAGQHGDY 315
              T        R  +Y+F L+PP+    GDY
Sbjct: 954  KVTTKKPMLVSRATSYVFNLQPPTDILFGDY 984


>tr|A7SGA9|A7SGA9_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g211841 PE=4 SV=1
          Length = 1184

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
 Frame = -1

Query: 442 FVVMH*SCSTLLSLVSNDLSLYTLSKKVLLV--------FSH*KPAEAARSSLHVALLKV 287
           F V+H   S L+  ++N ++ Y      +++        +S  KP   + SSL +    V
Sbjct: 581 FAVLHRQYSELVDTLTNQITNYHNHIITMVILQDPESHNWSDQKPFFESLSSLALRYSHV 640

Query: 286 ASAQTNKLQVWVRQKHTFQGVDRHQMSYCQTVSIVLRKKSSSSPDVRPDILNIDHCTLSK 107
             + +   Q+                S C +V+ +L K+ S  P   PDI N+ HC L+ 
Sbjct: 641 IPSSSRTKQMRCDVTALLLSCLSFMWSCCPSVAALLDKQYSEKPI--PDIHNLCHCLLAS 698

Query: 106 SAL--CLHDIL 80
            A+  C  DIL
Sbjct: 699 MAIVTCPLDIL 709