NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916453
Clone id YMU001_000087_H02
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATACTTTCTTATCTTCTAGGGTGCATCGACTGTTTCGTCAGAGACCAAATGCACTTCAA
TCATACAATCCAGTGGTTGGGGCAACTCCAGAGACATTGCTTTGGCGCCAAATCAAGTAC
TGGTGTTTTATTTCAGCCTGATGGCTGTAGATCACTCAGGGTGCAGCCCCGCTCTCCACG
TCTATAGAGGGTTTTTTCCTCCCCGGAGGTTTAGGTTGAGGCAGGTCAGACCACTTTGGG
CCGCCAAGAAGTTTCATCAAAGTGATTGGGTGACAGAGATTTTGCAGTTTGCAGTGCTCA
AACTTTGTGGGGGAGACATTTGAAGGATTCGGATGAGGATCGCCAGCTATCAGAAAAGCC
ATACATGTCATTAGTGATGTTGGGCCGCCGCATAGGAGTTGACATCGTCCTCGATCTCAA
GCTGCACAGGACGTGGCTTCATACATGAGTGTATGCTTGCGCGTCTCACCATGGAGGGAT
GTACTCTGTACCTCTCTACCGGAGCCTGCGTTAAATGAAGC
■■Homology search results ■■ -
sp_hit_id P72861
Definition sp|P72861|Y936_SYNY3 Uncharacterized protein sll0936 OS=Synechocystis sp. (strain PCC 6803)
Align length 73
Score (bit) 36.2
E-value 0.096
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916453|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_H02.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P72861|Y936_SYNY3 Uncharacterized protein sll0936 OS=Synechoc...    36   0.096
sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673...    30   5.3  
sp|Q30RK2|LEU3_SULDN 3-isopropylmalate dehydrogenase OS=Sulfurim...    30   6.9  
sp|Q2VZV2|LEU3_MAGMM 3-isopropylmalate dehydrogenase OS=Magnetos...    30   6.9  
sp|Q726X1|LEU3_DESVH 3-isopropylmalate dehydrogenase OS=Desulfov...    30   9.0  

>sp|P72861|Y936_SYNY3 Uncharacterized protein sll0936
           OS=Synechocystis sp. (strain PCC 6803) GN=sll0936 PE=3
           SV=1
          Length = 501

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 26/73 (35%), Positives = 33/73 (45%)
 Frame = -1

Query: 398 LLCGGPTSLMTCMAFLIAGDPHPNPSNVSPTKFEHCKLQNLCHPITLMKLLGGPKWSDLP 219
           L  GGP  L       + G P P   N+  T    C   N+ HP+ L  L  G K + L 
Sbjct: 39  LQAGGPGLLFEN----VKGSPFPVAVNLMGTVERICWAMNMDHPLELEDL--GKKLALLQ 92

Query: 218 QPKPPGRKKPSID 180
           QPKPP +   +ID
Sbjct: 93  QPKPPKKISQAID 105


>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730
           OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1
          Length = 658

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
 Frame = -1

Query: 395 LCGGPTSLMTCMAFLIAGDPHP---NPSN---VSPTKFEHCKLQNLCHPITLMKLL---- 246
           LCGGP  L  C +F ++  P P   NPSN      +K     +  +     L+ LL    
Sbjct: 218 LCGGP--LKPCKSFFVSPSPSPSLINPSNRLSSKKSKLSKAAIVAIIVASALVALLLLAL 275

Query: 245 ---------GGPKWSDLPQPKPPGRKKPSIDVESGAA 162
                     G   +   QPKP G    ++D+  GA+
Sbjct: 276 LLFLCLRKRRGSNEARTKQPKPAGVATRNVDLPPGAS 312


>sp|Q30RK2|LEU3_SULDN 3-isopropylmalate dehydrogenase
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=leuB PE=3 SV=1
          Length = 355

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 404 CQLLCGGPTSLMTCMAFLIAGDPHPNPS-NVSPTKFEHCKLQNLCHPITLMKLLGGPKWS 228
           C L      +LM   A+ I GDP P  + N+S           L     L   +GG KW 
Sbjct: 33  CDLEFSYEEALMGGCAYDITGDPLPQETINIS-----------LNSDAVLFGAIGGAKWD 81

Query: 227 DLPQPKPP 204
           +LP+ K P
Sbjct: 82  NLPREKRP 89


>sp|Q2VZV2|LEU3_MAGMM 3-isopropylmalate dehydrogenase
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=leuB PE=3 SV=1
          Length = 369

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 260 LMKLLGGPKWSDLPQPKPPGR 198
           L+  +GGPKW DLP  K P R
Sbjct: 71  LLGAVGGPKWDDLPFDKKPER 91


>sp|Q726X1|LEU3_DESVH 3-isopropylmalate dehydrogenase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=leuB PE=3 SV=1
          Length = 357

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 260 LMKLLGGPKWSDLPQPKPP 204
           L+  +GGPKW DLP  K P
Sbjct: 70  LLGAVGGPKWDDLPSEKRP 88
tr_hit_id B6HUD0
Definition tr|B6HUD0|B6HUD0_PENCH Putative uncharacterized protein Pc22g05170 OS=Penicillium chrysogenum Wisconsin 54-1255
Align length 80
Score (bit) 35.8
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916453|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_H02.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6HUD0|B6HUD0_PENCH Putative uncharacterized protein Pc22g051...    36   1.3  
tr|A0YK33|A0YK33_9CYAN Putative uncharacterized protein OS=Lyngb...    35   2.9  
tr|Q8DGT8|Q8DGT8_THEEB Tlr2225 protein OS=Thermosynechococcus el...    34   5.0  
tr|A9GME2|A9GME2_SORC5 Sigma-54 dependent DNA-binding response r...    34   5.0  
tr|A3EFA6|A3EFA6_VIBCH Putative adsorption protein OS=Vibrio cho...    33   6.5  
tr|A7UR44|A7UR44_ANOGA AGAP011037-PA OS=Anopheles gambiae GN=AGA...    33   6.5  
tr|A1T3N3|A1T3N3_MYCVP Short-chain dehydrogenase/reductase SDR O...    33   8.5  
tr|B5W8X5|B5W8X5_SPIMA UbiD family decarboxylase OS=Arthrospira ...    33   8.5  
tr|A3TRH9|A3TRH9_9MICO Putative uncharacterized protein OS=Janib...    33   8.5  

>tr|B6HUD0|B6HUD0_PENCH Putative uncharacterized protein Pc22g05170
           OS=Penicillium chrysogenum Wisconsin 54-1255
           GN=Pc22g05170 PE=3 SV=1
          Length = 243

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = -1

Query: 344 GDPHPNPSNVSPTKFEHCKLQNLCHPITLMKL----LGGPKWSDLP-QPKPPGRKKPSID 180
           G  +P+PS +SP  + H   +    P   ++       G + +DLP + +PPG    ++ 
Sbjct: 62  GSIYPSPSKISPFIYSHFPKEMHVDPHCSLRAEYYSSRGVRTADLPNETRPPGLLNGAVA 121

Query: 179 VESGAAP*VIYSHQAEIKHQ 120
             S AAP V Y     ++HQ
Sbjct: 122 PSSKAAPRVRYPFSPRLRHQ 141


>tr|A0YK33|A0YK33_9CYAN Putative uncharacterized protein OS=Lyngbya
           sp. PCC 8106 GN=L8106_15655 PE=4 SV=1
          Length = 502

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = -1

Query: 398 LLCGGPTSLMTCMAFLIAGDPHPNPSNVSPTKFEHCKLQNLCHPITLMKLLGGPKWSDLP 219
           L  GGP  L       + G PHP   N+  T+   C   N+  P  L +L  G K   L 
Sbjct: 39  LQSGGPGLLFEN----VKGSPHPVAINLLGTEQRVCLAMNMEKPQELEEL--GRKLGMLQ 92

Query: 218 QPKPPGRKKPSID 180
           QPKPP +   ++D
Sbjct: 93  QPKPPKKISQAVD 105


>tr|Q8DGT8|Q8DGT8_THEEB Tlr2225 protein OS=Thermosynechococcus
           elongatus (strain BP-1) GN=tlr2225 PE=4 SV=1
          Length = 508

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = -1

Query: 398 LLCGGPTSLMTCMAFLIAGDPHPNPSNVSPTKFEHCKLQNLCHPITLMKLLGGPKWSDLP 219
           L  GGP  L       + G P+P   N+  T    C   N+  P+ L  L  G K   L 
Sbjct: 39  LAAGGPALLFEN----VIGSPYPVAINLLGTLERVCWAMNMDDPLELETL--GEKLGKLQ 92

Query: 218 QPKPPGRKKPSID 180
           QPKPP     ++D
Sbjct: 93  QPKPPKTLSQALD 105


>tr|A9GME2|A9GME2_SORC5 Sigma-54 dependent DNA-binding response
           regulator OS=Sorangium cellulosum (strain So ce56)
           GN=sce3264 PE=4 SV=1
          Length = 457

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 509 AGSGREVQSTSLHGETRKHTLMYEATSCAA*DRG 408
           +GSG+E+ + +LHGE+R+    + A +CAA   G
Sbjct: 175 SGSGKEIVARALHGESRRRGRKFVAVNCAAIPEG 208


>tr|A3EFA6|A3EFA6_VIBCH Putative adsorption protein OS=Vibrio
           cholerae MO10 GN=VCMO10_1160 PE=4 SV=1
          Length = 493

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -1

Query: 365 CMAFLIAGDPHPNPSNVSPTKFEHCKLQNLCHPITLMKLLGGPKWSDLPQPKPPGRKKPS 186
           C +FL   +P+PNP      + +     N   P   +   GG   +    PKPP  +KP 
Sbjct: 196 CSSFLPEPNPNPNPEPEPEPEPQPDPEHNPSDPTAPLPDSGGEVINPSVPPKPPTEEKPK 255

Query: 185 IDVES 171
            DVE+
Sbjct: 256 PDVET 260


>tr|A7UR44|A7UR44_ANOGA AGAP011037-PA OS=Anopheles gambiae
           GN=AGAP011037 PE=4 SV=1
          Length = 507

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -1

Query: 338 PHPNPSNVSPTK----FEHCKLQNLCHPITLMKLLGGPKWSDLPQPKPPGRKKPSIDVES 171
           P+  P+  SP      FE  KL+N   P +L     G   S    P PP ++KP + V +
Sbjct: 240 PNREPAQTSPQDDGVIFERVKLRNSTPPDSLRSSTTG-SLSSASSPSPPPQRKPVLQVTT 298

Query: 170 GAA 162
           GA+
Sbjct: 299 GAS 301


>tr|A1T3N3|A1T3N3_MYCVP Short-chain dehydrogenase/reductase SDR
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=Mvan_0945 PE=4 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 308 WGRHLKDSDEDRQLSEKPYMSLVMLGRRIGVDIVLDLKLHRTWLHT*VYACASHHGGMYS 487
           WG HL D   +    E  Y  +V  G+    +++  ++L R W    V   + H GG+ S
Sbjct: 158 WGHHLSDIRWEDPHFESDYDGMVAYGQSKTANVLFAVELDRRWADDGVRGYSLHPGGIVS 217

Query: 488 VPL 496
             L
Sbjct: 218 TNL 220


>tr|B5W8X5|B5W8X5_SPIMA UbiD family decarboxylase OS=Arthrospira
           maxima CS-328 GN=AmaxDRAFT_5225 PE=4 SV=1
          Length = 505

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = -1

Query: 398 LLCGGPTSLMTCMAFLIAGDPHPNPSNVSPTKFEHCKLQNLCHPITLMKLLGGPKWSDLP 219
           L CGGP  L       + G  +P   N+  T+   C   N+  P  L +L  G K   L 
Sbjct: 39  LQCGGPGLLFEN----VKGAAYPVAVNLLGTEQRVCWAMNMEQPQELEEL--GKKLGMLQ 92

Query: 218 QPKPPGRKKPSID 180
           QPKPP +   +ID
Sbjct: 93  QPKPPKKISQAID 105


>tr|A3TRH9|A3TRH9_9MICO Putative uncharacterized protein
           OS=Janibacter sp. HTCC2649 GN=JNB_19933 PE=4 SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 266 LGDRDFAVCSAQTLWGRHLKDSD----EDRQLSEKPYMSLVMLGRRIGVDIVLDLKLH 427
           L D D AV S   L G  L+D D    EDR L+      L++LG R+  ++   L+LH
Sbjct: 7   LRDLDAAVASGAPLSGLRLQDLDLTRHEDRLLARTDLDGLIVLGGRLSPELDEHLRLH 64