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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916457
Clone id YMU001_000087_H06
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTAGTACAACTAAACCTTAATCATGTAAGGACCACAAAATCGAAACAATCTGGGTGGG
TGTATCTCCAGTATCATGCAATAAATTACAACTCAACAAGGTCATCGACTTTTGCAACCC
TACGATTACCCTGAGAGCATTTTGCTGACGAAGAAAATTCCTCAAGACTGTTCAGGAGAC
TCATTTCTCTAAATTTACATCAGTCATCTTCACTCTGATCATGTCCATGAACAGTCCCAG
AAAACCTTACAAAATTTTTCCAATGACTAATAACTACAATGAGGACAGCAGGCGCCGGGG
CCGACCAAACCTGCCGTTGTGCTCCAGCCATTATGGAAGAGCAGCATCTTTGTACATCAC
TTGCAATCGATCGGGGATGTTGCCATCTCTCCGACAATGAAGGCTCAGCTATCATAGATG
TATGTACCCCGTGTCAATTAGCTATACGAGCCTGGAAGTTGCAGGTGATCGTCATTGGAA
GAATAGGGCCCCGGTGCTGTAGGTTAGCATGAAAAGTAATCTGTCTTGGAGAGCCCT
■■Homology search results ■■ -
sp_hit_id A9IMR9
Definition sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
Align length 92
Score (bit) 30.4
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916457|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_H06.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase OS...    30   5.7  
sp|Q6G5F8|PNP_BARHE Polyribonucleotide nucleotidyltransferase OS...    30   5.7  
sp|Q0WRC9|FB218_ARATH F-box protein At4g02740 OS=Arabidopsis tha...    30   5.7  
sp|Q036B8|ADD_LACC3 Adenosine deaminase OS=Lactobacillus casei (...    30   7.4  
sp|Q8NNB4|DNAJ1_CORGL Chaperone protein dnaJ 1 OS=Corynebacteriu...    30   9.7  

>sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase
           OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
           GN=pnp PE=3 SV=1
          Length = 731

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = +2

Query: 29  KDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTITLRAFC*RRKFLKTVQETHFSKFTSVI 208
           K HKIE  W G  P++   L+  K+    +  +           + T  ET       ++
Sbjct: 3   KTHKIEIEWAG-RPLT---LETGKIARQADGAV-----------IATYGET-------IV 40

Query: 209 FTLIMSMNSPRKPYKIFPMTNNYNEDSRRRGR 304
              ++S  SP+     FP+T NY E S   GR
Sbjct: 41  LATVVSAKSPKPDQDFFPLTVNYQEKSYAVGR 72


>sp|Q6G5F8|PNP_BARHE Polyribonucleotide nucleotidyltransferase
           OS=Bartonella henselae GN=pnp PE=3 SV=1
          Length = 733

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = +2

Query: 29  KDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTITLRAFC*RRKFLKTVQETHFSKFTSVI 208
           K HKIE  W G  P++   L+  K+    +  +           + T  ET       ++
Sbjct: 3   KTHKIEIEWAG-RPLT---LETGKIARQADGAV-----------IATYGET-------IV 40

Query: 209 FTLIMSMNSPRKPYKIFPMTNNYNEDSRRRGR 304
              ++S  SP+     FP+T NY E S   GR
Sbjct: 41  LATVVSAKSPKPDQDFFPLTVNYQEKSYAVGR 72


>sp|Q0WRC9|FB218_ARATH F-box protein At4g02740 OS=Arabidopsis
           thaliana GN=At4g02740 PE=1 SV=1
          Length = 479

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 23  SCKDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTIT 130
           SCK++ ++T+ +     SC KLQ  +V++FCN  +T
Sbjct: 334 SCKENLLKTLILR----SCPKLQEKEVLEFCNSLLT 365


>sp|Q036B8|ADD_LACC3 Adenosine deaminase OS=Lactobacillus casei
           (strain ATCC 334) GN=add PE=3 SV=1
          Length = 339

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 288 AGAGAD-QTCRCAPAIMEEQHLCTSLAIDRGCCHLSDNEGSAI 413
           AG  AD  T  CAPAI   Q L   L    G CH   N G A+
Sbjct: 171 AGNEADFPTNVCAPAIKTAQSLGVPLTFHAGECHCPQNIGEAV 213


>sp|Q8NNB4|DNAJ1_CORGL Chaperone protein dnaJ 1 OS=Corynebacterium
           glutamicum GN=dnaJ1 PE=3 SV=1
          Length = 382

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
 Frame = +3

Query: 267 LITTMRTAGAGADQ------TCRCAPAIMEEQHLCTSLAIDRGCCHLSDNEGSAIIDVCT 428
           L T    +G+ +D+      TC  A  I E Q       +    CH  D  G  I D CT
Sbjct: 146 LCTKCHGSGSASDKKPVTCGTCNGAGEIQEVQRSFLGNVMTSRPCHTCDGTGEIIPDPCT 205

Query: 429 PC 434
            C
Sbjct: 206 EC 207
tr_hit_id A8SAC9
Definition tr|A8SAC9|A8SAC9_9FIRM Putative uncharacterized protein OS=Faecalibacterium prausnitzii M21/2
Align length 72
Score (bit) 34.3
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916457|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_H06.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8SAC9|A8SAC9_9FIRM Putative uncharacterized protein OS=Faeca...    34   4.2  
tr|A4EDD7|A4EDD7_9RHOB Oxidoreductase-like protein OS=Roseobacte...    33   7.2  
tr|Q8IKD0|Q8IKD0_PLAF7 Reticulocyte binding protein 2 homolog B,...    33   9.5  

>tr|A8SAC9|A8SAC9_9FIRM Putative uncharacterized protein
           OS=Faecalibacterium prausnitzii M21/2
           GN=FAEPRAM212_01326 PE=4 SV=1
          Length = 299

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
 Frame = +3

Query: 306 QTCRCAPAIMEEQHLCTSLAIDRGCC---------HLSDNEGSAIIDVCTPCQLAIRAWK 458
           QTC  A A+      CT   I  G C         H+ D       D CT C        
Sbjct: 120 QTCAAAAALYGGPKTCTFACIGLGDCTKVCKFDAIHIVDGVAKVDKDKCTGCGACANICP 179

Query: 459 LQVIVIGRIGPR 494
            QVI+I   GPR
Sbjct: 180 KQVIMIDAAGPR 191


>tr|A4EDD7|A4EDD7_9RHOB Oxidoreductase-like protein OS=Roseobacter
           sp. CCS2 GN=RCCS2_03469 PE=4 SV=1
          Length = 324

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -3

Query: 526 RQITFHANLQHRGPILPMTITCNFQARIAN*HGVHTSMIAEPSLSERWQHPRSIASDVQR 347
           +QITFH      G    +T+TC F A + +   +     A+   +ERW         V+ 
Sbjct: 235 QQITFH------GKKGVLTLTCPFNADVFDAATLTLENAAQTVTTERWPGVNQYVLQVEN 288

Query: 346 CCSSIMAGAQ 317
            C+S+  GA+
Sbjct: 289 FCNSVQTGAE 298


>tr|Q8IKD0|Q8IKD0_PLAF7 Reticulocyte binding protein 2 homolog B,
            putative OS=Plasmodium falciparum (isolate 3D7)
            GN=PF14_0675 PE=4 SV=1
          Length = 1095

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 118  PYDYPESILLTKKIPQDCSGDSFL*IYISHLHSDHVHEQSQKTLQNFSND 267
            P DY + ++L KK  +    D    IYI    + H++E S K ++ FS D
Sbjct: 940  PIDYIKELILKKKFSKHKDNDKIGIIYILAEETIHLYENSAKDVEPFSED 989