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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916465
Clone id YMU001_000088_A04
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATGATAGTAATAGTCAGAGCGGCTTCTGGTTAGCATTATGCAAGGCTCTGACAAGGTTG
AGTAAAGGTTGTTAGTCAGGTGCTGCTGAAAACGCAGCCATGGTTGGAAATGCTTTGATT
GGCATGTATATCAAGTGTGGATCTACCTGCATGTGCTTACAACATCGACATCGACATTGA
GAGGGTGCATTGGGGCAAGATTAACTGGTGGCTGGCTAGCTATCGCAAAAAACAGGCACA
AAAATGGTAGTGCAACTGTGCAAGGCATAAGTAATGGAGAGGCTAGCTAGTGGCAAGGAT
TCCGAATGGCAATAAGGGGAAGTCCAGACTGCACAACTGAAGAAAAATCCAGAGGGGCAT
TCTTCCCTGCTGGCACATGCAGAT
■■Homology search results ■■ -
sp_hit_id A5IDR5
Definition sp|A5IDR5|KUP2_LEGPC Probable potassium transport system protein kup 2 OS=Legionella pneumophila (strain Corby)
Align length 40
Score (bit) 38.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916465|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A04.
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5IDR5|KUP2_LEGPC Probable potassium transport system protein...    38   0.014
sp|Q5X3H2|KUP2_LEGPA Probable potassium transport system protein...    38   0.014
sp|Q5WUW3|KUP2_LEGPL Probable potassium transport system protein...    38   0.018
sp|Q5ZTN5|KUP2_LEGPH Probable potassium transport system protein...    35   0.088
sp|A6NM66|CU154_HUMAN Uncharacterized protein C21orf54 OS=Homo s...    32   1.3  
sp|Q69YN4|VIR_HUMAN Protein virilizer homolog OS=Homo sapiens GN...    30   2.8  
sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes prote...    30   3.7  
sp|Q9UT45|ENG1_SCHPO Endo-1,3(4)-beta-glucanase 1 OS=Schizosacch...    30   3.7  
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei...    30   3.8  
sp|Q4V7H1|STIL_XENLA SCL-interrupting locus protein homolog OS=X...    30   4.8  
sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containi...    30   4.9  
sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protei...    29   8.4  

>sp|A5IDR5|KUP2_LEGPC Probable potassium transport system protein
           kup 2 OS=Legionella pneumophila (strain Corby) GN=kup2
           PE=3 SV=1
          Length = 625

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 105 WKCFDWHVYQVWIYLHVLTTSTSTLRGCIGARLTGGWLAI 224
           ++C+ WH +++ I+L +L    +   G I   LTGGW+ I
Sbjct: 386 YRCWSWHAFKILIFLLILIIELAFFAGNIPKLLTGGWIPI 425


>sp|Q5X3H2|KUP2_LEGPA Probable potassium transport system protein
           kup 2 OS=Legionella pneumophila (strain Paris) GN=kup2
           PE=3 SV=1
          Length = 625

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 105 WKCFDWHVYQVWIYLHVLTTSTSTLRGCIGARLTGGWLAI 224
           ++C+ WH +++ I+L +L    +   G I   LTGGW+ I
Sbjct: 386 YRCWSWHAFKILIFLLILIIELAFFAGNIPKLLTGGWIPI 425


>sp|Q5WUW3|KUP2_LEGPL Probable potassium transport system protein
           kup 2 OS=Legionella pneumophila (strain Lens) GN=kup2
           PE=3 SV=1
          Length = 624

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 105 WKCFDWHVYQVWIYLHVLTTSTSTLRGCIGARLTGGWLAI 224
           ++C+ WH +++ I+L +L    +   G I   LTGGW+ +
Sbjct: 385 YRCWSWHAFKILIFLLILIIELAFFAGNIPKLLTGGWIPV 424


>sp|Q5ZTN5|KUP2_LEGPH Probable potassium transport system protein
           kup 2 OS=Legionella pneumophila subsp. pneumophila
           (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup2
           PE=3 SV=1
          Length = 625

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 111 CFDWHVYQVWIYLHVLTTSTSTLRGCIGARLTGGWLAI 224
           C++WH ++V I+  +L    +   G I   LTGGW+ I
Sbjct: 388 CWNWHAFKVMIFPLILVIELAFFAGNIPKLLTGGWIPI 425


>sp|A6NM66|CU154_HUMAN Uncharacterized protein C21orf54 OS=Homo
           sapiens GN=C21orf54 PE=4 SV=1
          Length = 108

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 356 PSGFFFSCAVWTSPYCHSESLPLASLSITYALHSCTTIFVPVFC 225
           P    F+C + TSPYC + +  +  L +  A+HS +      FC
Sbjct: 21  PGSLHFTCDLKTSPYCLTRAELMEHLPLRVAVHSMSPCHRSCFC 64


>sp|Q69YN4|VIR_HUMAN Protein virilizer homolog OS=Homo sapiens
           GN=KIAA1429 PE=1 SV=2
          Length = 1812

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 152 MQVDPH-LIYMPIKAFPTMAAFSAAPD-*QPLLNLVRALHN 36
           M+  PH +I  P+K+FPTMA  +  P+   P   L R LH+
Sbjct: 638 METAPHTMIQQPVKSFPTMARITGPPERDDPYPVLFRYLHS 678


>sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes protein 6
            OS=Schizosaccharomyces pombe GN=smc6 PE=1 SV=1
          Length = 1140

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 216  LAIAKNRHKNGSATVQGISNGEAS 287
            LA A NRH+    +VQG+S GE S
Sbjct: 1027 LATAHNRHEKSKVSVQGLSGGEKS 1050


>sp|Q9UT45|ENG1_SCHPO Endo-1,3(4)-beta-glucanase 1
           OS=Schizosaccharomyces pombe GN=eng1 PE=2 SV=1
          Length = 1016

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 117 DWHVYQVWIYLHVLTTSTSTLRGCIGARLTGGWLAIAKNRHKNGSA 254
           D HV+ ++IY   LT + ST +  +G+    G++ IAK    +G+A
Sbjct: 233 DNHVWLIYIYGDSLTLTESTSQMLVGSNTFNGYIQIAKIPLGDGTA 278


>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein
           At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1
          Length = 781

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 79  GAAENAAMVGNALIGMYIKCGS 144
           G  E    VGNAL+ MY KCGS
Sbjct: 438 GGYETGCFVGNALLLMYCKCGS 459


>sp|Q4V7H1|STIL_XENLA SCL-interrupting locus protein homolog
           OS=Xenopus laevis GN=stil PE=2 SV=2
          Length = 1281

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = -3

Query: 256 VALPFLCLFFAIASQPPVNLAPMHPLNVDVDVVSTCR*IHT*YTCQSKHFQPWLRFQQHL 77
           V  P      A  ++P  NLAP H  NV       C   H+  +C SK+  P +    HL
Sbjct: 603 VTFPLHSRHVAEVAKPSPNLAPFHQTNV-------CTSCHSLVSCHSKNCWPAM---GHL 652

Query: 76  TNNLYSTLSEP 44
           T   Y T+  P
Sbjct: 653 T---YHTMENP 660
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916465|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A04.
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******