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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916470
Clone id YMU001_000088_A09
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGATGAAAAAGACATTGCTGCATTTTCAAATTTAATATGGAGCTCTGCTGGTTGGCTCCA
TCATATAAGAAGGGTTTTTGTCCCTTCACTTTTATCATTAAAGCTTGCCGGCAAGCACAA
AGATGGTGTAGCCGGAATGTGAATGCCTTATTTTGATGCGGCGTGTGTGTGTGTGTGTTA
TCCTAATTCCCTATGGAGTATCAGGTCTTGAGTTCAAGACTCGTTGGATAGGTCTTTTGA
GGTCCCTCGGGAATGTTCCTACGATGTTAAAAACTCTCTCTAGCCCCTCCCCCTGTATAG
ACCAAAGCCATAACATTGTTGGTAATGTTGTGTCCTATGACTCCTTAACTGTCTCTGTGA
ACCTCTTCTAGGTGACGTGATAGTAAGTAAGAGATGACATAAATGAGTGAAGCCCCTCTT
GACTATGTAGGATGGCATGTAGCGTAGTTATTGGCTCTGTCAATCCACTTTGGTTGTGGC
AATGTCTGTTGCACCGCTCACTTGATGGCAAGCAACTG
■■Homology search results ■■ -
sp_hit_id P83006
Definition sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Rattus norvegicus
Align length 82
Score (bit) 32.7
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916470|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A09.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2...    33   0.98 
sp|Q75EA2|MON1_ASHGO Vacuolar fusion protein MON1 OS=Ashbya goss...    32   1.3  
sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein C9o...    31   3.7  
sp|Q7S8B6|EXO84_NEUCR Exocyst complex component EXO84 OS=Neurosp...    30   6.4  
sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf...    30   6.4  
sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium b...    30   6.5  

>sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2,
           cytoplasmic OS=Rattus norvegicus GN=Pafah2 PE=1 SV=2
          Length = 390

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +3

Query: 138 CECLILMRRVCVCVILIPYGVSGLEFKTRWIGLLRSLG----NVPTM----LKTLSSPSP 293
           CE  + + R   CV L  Y    L++  RW+GLL ++G     +P       KT  S  P
Sbjct: 46  CEQPLWIPRYEYCVGLADY----LQYNKRWVGLLFNVGIGSCRLPVSWNGPFKTKESGYP 101

Query: 294 CIDQSHNIVGNVVSYDSLTVSV 359
            I  SH + G  VSY +  + +
Sbjct: 102 LIILSHGLGGFRVSYSAFCMEL 123


>sp|Q75EA2|MON1_ASHGO Vacuolar fusion protein MON1 OS=Ashbya
           gossypii GN=MON1 PE=3 SV=1
          Length = 654

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 43  LCWLAPSYK------KGFCPFTFIIKACRQAQRWCSRNVNALF 153
           L W+ PS++       G  P   ++K+ R    WCSRN + LF
Sbjct: 605 LSWITPSFELYLLCNNGEIPKAVVMKSARNVVGWCSRNGHKLF 647


>sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein
           C9orf98 homolog OS=Mus musculus PE=2 SV=1
          Length = 479

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +3

Query: 189 PYGVSGLEFKTRWIG----LLRSLGNVPTMLKTLSSPSPCID 302
           P G+S +E   + +     ++R L + P +LKT+SS  PC+D
Sbjct: 207 PEGISEIETAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q7S8B6|EXO84_NEUCR Exocyst complex component EXO84 OS=Neurospora
           crassa GN=exo-84 PE=3 SV=2
          Length = 683

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 308 ALVYTGGGARESF*HRRNIPEGPQKT 231
           A++  GGG  ESF +R   PE P+KT
Sbjct: 365 AIMVRGGGQNESFIYRTEKPEDPEKT 390


>sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf98
           homolog OS=Rattus norvegicus PE=2 SV=1
          Length = 479

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 180 ILIPYGVSGLEFKTRWIG----LLRSLGNVPTMLKTLSSPSPCID 302
           ++ P G+S ++   + +     ++R L + P +LKT+SS  PC+D
Sbjct: 204 LIQPEGISEIDTAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium
           botulinum PE=1 SV=2
          Length = 1251

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 502 SERCNRHCHNQSGLTEPITTLHAILHSQEGLHSFMSSLTYYHVT*KR 362
           S R N +C N+      +T +H ++HS  GL+      T Y +T K+
Sbjct: 191 SFRFNDNCMNEFIQDPALTLMHELIHSLHGLYGAKGITTKYTITQKQ 237
tr_hit_id A6AYY0
Definition tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems inner membrane component OS=Vibrio parahaemolyticus AQ3810
Align length 53
Score (bit) 33.9
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916470|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A09.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport syste...    34   4.5  
tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter OS=V...    33   7.6  
tr|Q6W205|Q6W205_RHISN Spermidine/putrescine transport system pe...    33   9.9  
tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter OS=V...    33   9.9  
tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport ...    33   9.9  

>tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems
           inner membrane component OS=Vibrio parahaemolyticus
           AQ3810 GN=A79_6211 PE=3 SV=1
          Length = 426

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
           V+L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 246 VVLLPFWTSLLVRTTSWIVLLQNQGVINDLLMWSGLTSERIQMIHNTFGTVVS 298


>tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter
           OS=Vibrio parahaemolyticus GN=VP1337 PE=3 SV=1
          Length = 426

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
           V+L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 246 VVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGLTSERIQMIHNTFGTVVS 298


>tr|Q6W205|Q6W205_RHISN Spermidine/putrescine transport system
           permease protein potB OS=Rhizobium sp. (strain NGR234)
           GN=potB PE=3 SV=1
          Length = 420

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +3

Query: 162 RVCVCVILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
           R  + ++L+P+  S L   T W+ LL+S G V ++L  L   S  ++  HN VG +++
Sbjct: 235 RWLLMLVLLPFWTSLLVRTTAWLVLLQSNGVVNSLLSWLGLISQPLELVHNRVGVLIA 292


>tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter
           OS=Vibrio alginolyticus 12G01 GN=V12G01_19277 PE=3 SV=1
          Length = 426

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
           ++L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 246 IVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298


>tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport
           system, permease component I OS=Vibrio sp. Ex25
           GN=VEx25_1079 PE=3 SV=1
          Length = 426

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
           ++L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 246 IVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298