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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916472
Clone id YMU001_000088_A11
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTACTACTTGTTGAGCATATCTGGAATACTTGTTCAGATGTATCATCCAATGACAACTTC
CCGGCTGAACAGATTCGCCTGTCAAAATTGTTTCATCATCATAATGACAACATAAAGCCA
CTCCAAACGCTGTGCTACTGTTTACAAAAGGGTCTGAAATTGCAGACGTGGCTCTTTCCT
CAACAGCATTGGACTTAACTGAGGCATCCTCTACCTTTTTCACAGTACACTCATCTGGTC
GATTGCTTGCTTCTCTTAAAGGAGCATGAACATCTTTCATATTGACATCGAGGATATCAC
ACTCTATAGAGTCATCGAGTGACACACAGTCGCCGTATCTTTGCACAACACAGTTATCTT
CTACATTTGTACTAAAAGGAATCAGAATTGGCCTCACATTGTTGACTTCTGCTCCTTGTT
CCCGCTCATCAAAAGAATCATGTTGGCAGCAATGACAAAAGTAATGCTGTTCTTCTACAA
CCTCTACATATCCAAGTTCTACATG
■■Homology search results ■■ -
sp_hit_id Q7V4D3
Definition sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA OS=Prochlorococcus marinus (strain MIT 9313)
Align length 86
Score (bit) 34.3
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916472|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A11.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA...    34   0.34 
sp|Q9ZCN6|SYV_RICPR Valyl-tRNA synthetase OS=Rickettsia prowazek...    33   1.00 
sp|Q68W50|SYV_RICTY Valyl-tRNA synthetase OS=Rickettsia typhi GN...    32   1.7  
sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-...    32   2.2  
sp|Q7S9L2|STU1_NEUCR Protein stu-1 OS=Neurospora crassa GN=stu-1...    30   4.9  
sp|Q22560|IMA1_CAEEL Importin subunit alpha-1 OS=Caenorhabditis ...    30   6.5  
sp|A4YES9|CAPPA_METS5 Phosphoenolpyruvate carboxylase OS=Metallo...    30   6.5  
sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=...    30   8.4  
sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=...    30   8.4  

>sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA
           OS=Prochlorococcus marinus (strain MIT 9313) GN=hrcA
           PE=3 SV=1
          Length = 352

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
 Frame = +1

Query: 37  DVSSNDNFPAEQIR-LSKLFHHHNDNIKPLQTLCYCLQKGLKL-------------QTWL 174
           DV++ ++ PA Q + L    HH+ D I+P+ +     + GLK              Q  L
Sbjct: 17  DVTALESLPARQQQVLQATVHHYVDTIEPVGSKTLVQRFGLKASAATVRSAMGALEQRGL 76

Query: 175 FPQQHWT*LRHPLPFSQYTHLVDCLL 252
             Q H +  R P P   Y H VDCLL
Sbjct: 77  LTQPHTSAGRVPSP-QGYRHYVDCLL 101


>sp|Q9ZCN6|SYV_RICPR Valyl-tRNA synthetase OS=Rickettsia prowazekii
           GN=valS PE=3 SV=1
          Length = 814

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 238 PDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILT 80
           PD+   K + D S  +    E+    ++DP V      G+ +CC + D+T +T
Sbjct: 230 PDDVRYKHLADKSAITPLFNEKVP-ILADPLVQQDKGTGLVMCCTFGDQTDIT 281


>sp|Q68W50|SYV_RICTY Valyl-tRNA synthetase OS=Rickettsia typhi
           GN=valS PE=3 SV=1
          Length = 814

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 238 PDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILT 80
           PD+   K + D S  +    E+    ++DP V      G+ +CC + D+T +T
Sbjct: 230 PDDGRYKHLADKSAITPLFNEKVP-ILADPLVQQDKGTGLVMCCTFGDQTDIT 281


>sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein
           4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo
           sapiens GN=B4GALNT3 PE=1 SV=2
          Length = 998

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +1

Query: 172 LFPQQHWT*LRHPLPFSQY--THLVDCLLLLK----EHEHLSY*HRGYHTL*SHRVTHSR 333
           L P+ H   LRH LP   Y  ++LVD L L +       HLS+ +   +T  SH  TH++
Sbjct: 335 LIPKSH---LRHVLPDCPYKPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNK 391

Query: 334 RIFAQHSY 357
             + +++Y
Sbjct: 392 CFYQENAY 399


>sp|Q7S9L2|STU1_NEUCR Protein stu-1 OS=Neurospora crassa GN=stu-1
           PE=3 SV=1
          Length = 1136

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 7   LVEHIWNTCSDVSSNDNFPAEQ---IRLSKLFHHHN--DNIKPLQTLCYCLQKGL 156
           L++HIW  C D +      A +     L+K+ HH N  ++   L  +  C++KGL
Sbjct: 427 LMQHIWMACQDKNVQPRLYATEWLTTMLTKMAHHKNQVEHTGGLDLIEKCIKKGL 481


>sp|Q22560|IMA1_CAEEL Importin subunit alpha-1 OS=Caenorhabditis
           elegans GN=ima-1 PE=1 SV=1
          Length = 524

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = +2

Query: 239 SIACFS*RSMNIFHIDIEDITLYRVIE*HTVAVS--LHNT---VIFYICTKRNQNWPHIV 403
           SIACF  RS+   ++ ++   +  +I+  T+ +S  LH +   ++F  C K ++  PH+ 
Sbjct: 177 SIACFIIRSITYRNLALDCAIVSELIDASTINMSIILHRSLMWLVFLFCEKLDRCSPHVD 236

Query: 404 DFCSLFPLI 430
           +   L  +I
Sbjct: 237 EIAPLLEII 245


>sp|A4YES9|CAPPA_METS5 Phosphoenolpyruvate carboxylase
           OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
           GN=ppcA PE=3 SV=1
          Length = 509

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 427 EREQGAEVNNVRPILIPFSTNVEDNCVVQRYGD-CVSLDDSIE 302
           ER  G +V  V  +++PF+TN  D   V RY +  V+++++IE
Sbjct: 116 ERFYGRKVVPVFEVILPFTTNASDIISVARYYERAVAMEENIE 158


>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus
           musculus GN=Trim67 PE=2 SV=1
          Length = 768

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 118 ALCCHYDDETILTGESVQPGSCHWMIHLNKYSRY 17
           A C  YDD  +L   +   G  +W +H+++Y  +
Sbjct: 615 ATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNH 648


>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67
           OS=Homo sapiens GN=TRIM67 PE=2 SV=2
          Length = 756

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 118 ALCCHYDDETILTGESVQPGSCHWMIHLNKYSRY 17
           A C  YDD  +L   +   G  +W +H+++Y  +
Sbjct: 630 ATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNH 663
tr_hit_id A8L3N0
Definition tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (strain EAN1pec)
Align length 74
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916472|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A11.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (str...    36   1.2  
tr|A2CD66|A2CD66_PROM3 Negative regulator of class I heat shock ...    34   3.5  
tr|Q7S199|Q7S199_NEUCR Putative uncharacterized protein OS=Neuro...    33   6.0  
tr|B4M849|B4M849_DROVI GJ16746 OS=Drosophila virilis GN=GJ16746 ...    33   7.8  

>tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (strain
           EAN1pec) GN=Franean1_6956 PE=4 SV=1
          Length = 1500

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 26/74 (35%), Positives = 35/74 (47%)
 Frame = -1

Query: 301 CDILDVNMKDVHAPLREASNRPDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFG 122
           CD L  N+  V   LR+A + P    + +V  AS    AVEE A SA+S PF+  +    
Sbjct: 518 CDHLGPNIAMVRH-LRQAIDSPGSAPIPEVTPASAPFLAVEETALSALSGPFLARARRIQ 576

Query: 121 VALCCHYDDETILT 80
                  D + ILT
Sbjct: 577 EHFVAAADKQHILT 590


>tr|A2CD66|A2CD66_PROM3 Negative regulator of class I heat shock
           protein OS=Prochlorococcus marinus (strain MIT 9303)
           GN=hrcA PE=4 SV=1
          Length = 352

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
 Frame = +1

Query: 37  DVSSNDNFPAEQIR-LSKLFHHHNDNIKPLQTLCYCLQKGLKL-------------QTWL 174
           DV++ ++ PA Q + L    HH+ D I+P+ +     + GLK              Q  L
Sbjct: 17  DVTALESLPARQQQVLQATVHHYVDTIEPVGSKTLVQRFGLKASAATVRSAMGALEQRGL 76

Query: 175 FPQQHWT*LRHPLPFSQYTHLVDCLL 252
             Q H +  R P P   Y H VDCLL
Sbjct: 77  LTQPHTSAGRVPSP-QGYRHYVDCLL 101


>tr|Q7S199|Q7S199_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU07521 PE=4 SV=1
          Length = 755

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 286 VNMKDVHAPLREASNRPDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVA--L 113
           +N  D+     EA N     T+ +++     S  ++  A S  S P + S   F  A  L
Sbjct: 426 INDSDLSLLHDEAGNPIHYATLPELDPHPSASGQIQTPARSHFSSPALFSPPIFHRASIL 485

Query: 112 CCHYDDETILTGES 71
           C  YDDE ++TG S
Sbjct: 486 CLQYDDEILVTGSS 499


>tr|B4M849|B4M849_DROVI GJ16746 OS=Drosophila virilis GN=GJ16746
           PE=4 SV=1
          Length = 291

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = -1

Query: 226 TVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILTGESVQPGS--- 56
           T +++ +AS+     +       SD F   + AFG+  C H D         +QPG    
Sbjct: 148 TAERLPNASIDWQCADAEKLPFKSDSFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFM 207

Query: 55  CHWMIHLNK------YSRYAQQVV 2
           C    HLN       Y +Y+ QV+
Sbjct: 208 CLEFSHLNNETLQWLYDQYSFQVI 231