BP916472
Clone id YMU001_000088_A11
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTACTACTTGTTGAGCATATCTGGAATACTTGTTCAGATGTATCATCCAATGACAACTTC
CCGGCTGAACAGATTCGCCTGTCAAAATTGTTTCATCATCATAATGACAACATAAAGCCA
CTCCAAACGCTGTGCTACTGTTTACAAAAGGGTCTGAAATTGCAGACGTGGCTCTTTCCT
CAACAGCATTGGACTTAACTGAGGCATCCTCTACCTTTTTCACAGTACACTCATCTGGTC
GATTGCTTGCTTCTCTTAAAGGAGCATGAACATCTTTCATATTGACATCGAGGATATCAC
ACTCTATAGAGTCATCGAGTGACACACAGTCGCCGTATCTTTGCACAACACAGTTATCTT
CTACATTTGTACTAAAAGGAATCAGAATTGGCCTCACATTGTTGACTTCTGCTCCTTGTT
CCCGCTCATCAAAAGAATCATGTTGGCAGCAATGACAAAAGTAATGCTGTTCTTCTACAA
CCTCTACATATCCAAGTTCTACATG
■■Homology search results ■■ -
sp_hit_id Q7V4D3
Definition sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA OS=Prochlorococcus marinus (strain MIT 9313)
Align length 86
Score (bit) 34.3
E-value 0.34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916472|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A11.
(505 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA... 34 0.34
sp|Q9ZCN6|SYV_RICPR Valyl-tRNA synthetase OS=Rickettsia prowazek... 33 1.00
sp|Q68W50|SYV_RICTY Valyl-tRNA synthetase OS=Rickettsia typhi GN... 32 1.7
sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-... 32 2.2
sp|Q7S9L2|STU1_NEUCR Protein stu-1 OS=Neurospora crassa GN=stu-1... 30 4.9
sp|Q22560|IMA1_CAEEL Importin subunit alpha-1 OS=Caenorhabditis ... 30 6.5
sp|A4YES9|CAPPA_METS5 Phosphoenolpyruvate carboxylase OS=Metallo... 30 6.5
sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=... 30 8.4
sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=... 30 8.4

>sp|Q7V4D3|HRCA_PROMM Heat-inducible transcription repressor hrcA
OS=Prochlorococcus marinus (strain MIT 9313) GN=hrcA
PE=3 SV=1
Length = 352

Score = 34.3 bits (77), Expect = 0.34
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Frame = +1

Query: 37 DVSSNDNFPAEQIR-LSKLFHHHNDNIKPLQTLCYCLQKGLKL-------------QTWL 174
DV++ ++ PA Q + L HH+ D I+P+ + + GLK Q L
Sbjct: 17 DVTALESLPARQQQVLQATVHHYVDTIEPVGSKTLVQRFGLKASAATVRSAMGALEQRGL 76

Query: 175 FPQQHWT*LRHPLPFSQYTHLVDCLL 252
Q H + R P P Y H VDCLL
Sbjct: 77 LTQPHTSAGRVPSP-QGYRHYVDCLL 101


>sp|Q9ZCN6|SYV_RICPR Valyl-tRNA synthetase OS=Rickettsia prowazekii
GN=valS PE=3 SV=1
Length = 814

Score = 32.7 bits (73), Expect = 1.00
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1

Query: 238 PDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILT 80
PD+ K + D S + E+ ++DP V G+ +CC + D+T +T
Sbjct: 230 PDDVRYKHLADKSAITPLFNEKVP-ILADPLVQQDKGTGLVMCCTFGDQTDIT 281


>sp|Q68W50|SYV_RICTY Valyl-tRNA synthetase OS=Rickettsia typhi
GN=valS PE=3 SV=1
Length = 814

Score = 32.0 bits (71), Expect = 1.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1

Query: 238 PDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILT 80
PD+ K + D S + E+ ++DP V G+ +CC + D+T +T
Sbjct: 230 PDDGRYKHLADKSAITPLFNEKVP-ILADPLVQQDKGTGLVMCCTFGDQTDIT 281


>sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein
4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo
sapiens GN=B4GALNT3 PE=1 SV=2
Length = 998

Score = 31.6 bits (70), Expect = 2.2
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +1

Query: 172 LFPQQHWT*LRHPLPFSQY--THLVDCLLLLK----EHEHLSY*HRGYHTL*SHRVTHSR 333
L P+ H LRH LP Y ++LVD L L + HLS+ + +T SH TH++
Sbjct: 335 LIPKSH---LRHVLPDCPYKPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNK 391

Query: 334 RIFAQHSY 357
+ +++Y
Sbjct: 392 CFYQENAY 399


>sp|Q7S9L2|STU1_NEUCR Protein stu-1 OS=Neurospora crassa GN=stu-1
PE=3 SV=1
Length = 1136

Score = 30.4 bits (67), Expect = 4.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1

Query: 7 LVEHIWNTCSDVSSNDNFPAEQ---IRLSKLFHHHN--DNIKPLQTLCYCLQKGL 156
L++HIW C D + A + L+K+ HH N ++ L + C++KGL
Sbjct: 427 LMQHIWMACQDKNVQPRLYATEWLTTMLTKMAHHKNQVEHTGGLDLIEKCIKKGL 481


>sp|Q22560|IMA1_CAEEL Importin subunit alpha-1 OS=Caenorhabditis
elegans GN=ima-1 PE=1 SV=1
Length = 524

Score = 30.0 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +2

Query: 239 SIACFS*RSMNIFHIDIEDITLYRVIE*HTVAVS--LHNT---VIFYICTKRNQNWPHIV 403
SIACF RS+ ++ ++ + +I+ T+ +S LH + ++F C K ++ PH+
Sbjct: 177 SIACFIIRSITYRNLALDCAIVSELIDASTINMSIILHRSLMWLVFLFCEKLDRCSPHVD 236

Query: 404 DFCSLFPLI 430
+ L +I
Sbjct: 237 EIAPLLEII 245


>sp|A4YES9|CAPPA_METS5 Phosphoenolpyruvate carboxylase
OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=ppcA PE=3 SV=1
Length = 509

Score = 30.0 bits (66), Expect = 6.5
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1

Query: 427 EREQGAEVNNVRPILIPFSTNVEDNCVVQRYGD-CVSLDDSIE 302
ER G +V V +++PF+TN D V RY + V+++++IE
Sbjct: 116 ERFYGRKVVPVFEVILPFTTNASDIISVARYYERAVAMEENIE 158


>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus
musculus GN=Trim67 PE=2 SV=1
Length = 768

Score = 29.6 bits (65), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1

Query: 118 ALCCHYDDETILTGESVQPGSCHWMIHLNKYSRY 17
A C YDD +L + G +W +H+++Y +
Sbjct: 615 ATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNH 648


>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67
OS=Homo sapiens GN=TRIM67 PE=2 SV=2
Length = 756

Score = 29.6 bits (65), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1

Query: 118 ALCCHYDDETILTGESVQPGSCHWMIHLNKYSRY 17
A C YDD +L + G +W +H+++Y +
Sbjct: 630 ATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNH 663


tr_hit_id A8L3N0
Definition tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (strain EAN1pec)
Align length 74
Score (bit) 35.8
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916472|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A11.
(505 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (str... 36 1.2
tr|A2CD66|A2CD66_PROM3 Negative regulator of class I heat shock ... 34 3.5
tr|Q7S199|Q7S199_NEUCR Putative uncharacterized protein OS=Neuro... 33 6.0
tr|B4M849|B4M849_DROVI GJ16746 OS=Drosophila virilis GN=GJ16746 ... 33 7.8

>tr|A8L3N0|A8L3N0_FRASN NB-ARC domain protein OS=Frankia sp. (strain
EAN1pec) GN=Franean1_6956 PE=4 SV=1
Length = 1500

Score = 35.8 bits (81), Expect = 1.2
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = -1

Query: 301 CDILDVNMKDVHAPLREASNRPDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFG 122
CD L N+ V LR+A + P + +V AS AVEE A SA+S PF+ +
Sbjct: 518 CDHLGPNIAMVRH-LRQAIDSPGSAPIPEVTPASAPFLAVEETALSALSGPFLARARRIQ 576

Query: 121 VALCCHYDDETILT 80
D + ILT
Sbjct: 577 EHFVAAADKQHILT 590


>tr|A2CD66|A2CD66_PROM3 Negative regulator of class I heat shock
protein OS=Prochlorococcus marinus (strain MIT 9303)
GN=hrcA PE=4 SV=1
Length = 352

Score = 34.3 bits (77), Expect = 3.5
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Frame = +1

Query: 37 DVSSNDNFPAEQIR-LSKLFHHHNDNIKPLQTLCYCLQKGLKL-------------QTWL 174
DV++ ++ PA Q + L HH+ D I+P+ + + GLK Q L
Sbjct: 17 DVTALESLPARQQQVLQATVHHYVDTIEPVGSKTLVQRFGLKASAATVRSAMGALEQRGL 76

Query: 175 FPQQHWT*LRHPLPFSQYTHLVDCLL 252
Q H + R P P Y H VDCLL
Sbjct: 77 LTQPHTSAGRVPSP-QGYRHYVDCLL 101


>tr|Q7S199|Q7S199_NEUCR Putative uncharacterized protein
OS=Neurospora crassa GN=NCU07521 PE=4 SV=1
Length = 755

Score = 33.5 bits (75), Expect = 6.0
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1

Query: 286 VNMKDVHAPLREASNRPDECTVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVA--L 113
+N D+ EA N T+ +++ S ++ A S S P + S F A L
Sbjct: 426 INDSDLSLLHDEAGNPIHYATLPELDPHPSASGQIQTPARSHFSSPALFSPPIFHRASIL 485

Query: 112 CCHYDDETILTGES 71
C YDDE ++TG S
Sbjct: 486 CLQYDDEILVTGSS 499


>tr|B4M849|B4M849_DROVI GJ16746 OS=Drosophila virilis GN=GJ16746
PE=4 SV=1
Length = 291

Score = 33.1 bits (74), Expect = 7.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Frame = -1

Query: 226 TVKKVEDASVKSNAVEERATSAISDPFVNSSTAFGVALCCHYDDETILTGESVQPGS--- 56
T +++ +AS+ + SD F + AFG+ C H D +QPG
Sbjct: 148 TAERLPNASIDWQCADAEKLPFKSDSFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFM 207

Query: 55 CHWMIHLNK------YSRYAQQVV 2
C HLN Y +Y+ QV+
Sbjct: 208 CLEFSHLNNETLQWLYDQYSFQVI 231