NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916475
Clone id YMU001_000088_B02
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGCAATAGAACAAAGTGTTCCTTATTGTTGATGAACACTGTTTTTCCATAACTTTAACA
TATCGATGGAAAGTAAAGATGGAGACATAGTAGATATTATCTTTACCTCTAGAGTGGGTC
CAGTGTATTGGGCAGTCTCTTGTGAAGTTCCAAATGCATAAAGGGCAGTGCTTGGTAAGT
CCCTATGAAGCTTCTGATCGATGTCAATGAACCAACCAGGGAGCCAACATATGCAACACA
AGAACATTCATATTAAATTTGGCATTTAAAGCGATATTACTACAAAACAGGAGTTTGTTG
GTGCAAATTTTGCATCTGAGTGGCAAAGTGCTGTTGAATCCTGAAGTTCTGTGATGCAAT
ATCTGCTTGCAAATCGCGGTAATGCCATCCATCTATGCCTGTCGCATATCCGAGGAACTA
GCACTGGTAATTTCTACCACGCAAGCTTGTACCTATGCCCATCCATCTATGCCTGTCGTG
TATCTCCA
■■Homology search results ■■ -
sp_hit_id A5N7J2
Definition sp|A5N7J2|DXS_CLOK5 1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
Align length 39
Score (bit) 30.0
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916475|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B02.
         (488 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5N7J2|DXS_CLOK5 1-deoxy-D-xylulose-5-phosphate synthase OS=C...    30   5.8  
sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidop...    30   5.8  
sp|P07788|COTA_BACSU Spore coat protein A OS=Bacillus subtilis G...    30   7.6  
sp|Q7LZI2|PA2J_NAJKA Phospholipase A2 inhibitor 25 kDa subunit O...    29   9.9  
sp|Q6NS59|F135A_MOUSE Protein FAM135A OS=Mus musculus GN=Fam135a...    29   9.9  

>sp|A5N7J2|DXS_CLOK5 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
           NCIMB 10680) GN=dxs PE=3 SV=1
          Length = 624

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 152 WNFTRDCPIHWTHSRGKDNIYYVSI--FTFHRYVKVMEK 42
           W   ++CPI   + RG DN+Y   +  F F R+  ++ K
Sbjct: 459 WALNQNCPIAIRYPRGGDNVYLTPLEDFEFGRWEYILNK 497


>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis
           thaliana GN=BLH1 PE=1 SV=1
          Length = 680

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 111 RVGPVYWAVSCEVPNA*RAVLGKSL*SF*SMSMNQPGSQHMQHKNIHIKFG 263
           +V P +   +CE P   RA  G SL    S    Q    H QH+ IH+ FG
Sbjct: 120 QVDPTHQQAACETP---RAQQGLSLTL--SSQQQQQQQHHQQHQPIHVGFG 165


>sp|P07788|COTA_BACSU Spore coat protein A OS=Bacillus subtilis
           GN=cotA PE=1 SV=4
          Length = 513

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVK 101
           +LHRDLP T L+ +        + GPT+EVK
Sbjct: 38  QLHRDLPPTRLWGY-----NGLFPGPTIEVK 63


>sp|Q7LZI2|PA2J_NAJKA Phospholipase A2 inhibitor 25 kDa subunit
           OS=Naja kaouthia PE=1 SV=1
          Length = 185

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 170 HCPLCIWNFTRDCPIHWTHSRGKDN 96
           HCP CI  F+++C  H    R  +N
Sbjct: 100 HCPACIGLFSKECTEHLVSCRASEN 124


>sp|Q6NS59|F135A_MOUSE Protein FAM135A OS=Mus musculus GN=Fam135a PE=2
            SV=2
          Length = 1506

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 193  KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLS 68
            K H D P T   + GTS   +  + PTL  K+I   SP ++S
Sbjct: 941  KPHLDAPFTGPQSQGTSSNNSTESVPTLNSKLICLGSPCVVS 982
tr_hit_id A9U4M8
Definition tr|A9U4M8|A9U4M8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 61
Score (bit) 53.1
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916475|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B02.
         (488 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U4M8|A9U4M8_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   7e-06
tr|A9S0U0|A9S0U0_PHYPA Predicted protein OS=Physcomitrella paten...    53   7e-06
tr|A2ZNT1|A2ZNT1_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|Q5ZE07|Q5ZE07_ORYSJ cDNA clone:J023145F10, full insert sequen...    44   0.003
tr|B8AD14|B8AD14_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A7P3J5|A7P3J5_VITVI Chromosome chr1 scaffold_5, whole genome ...    44   0.004
tr|A7P3J2|A7P3J2_VITVI Chromosome chr1 scaffold_5, whole genome ...    44   0.004
tr|A5AYW5|A5AYW5_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|Q9C9A4|Q9C9A4_ARATH Spore coat protein-like protein; 24980-21...    42   0.012
tr|Q949X9|Q949X9_ARATH Putative spore coat protein OS=Arabidopsi...    42   0.012
tr|Q8W4N2|Q8W4N2_ARATH Spore coat protein-like protein OS=Arabid...    42   0.012
tr|Q8L8N9|Q8L8N9_ARATH Spore coat protein-like protein OS=Arabid...    42   0.012
tr|Q8GXX3|Q8GXX3_ARATH Putative uncharacterized protein At1g2301...    42   0.020
tr|O23123|O23123_ARATH Putative uncharacterized protein F19G10.5...    42   0.020
tr|A5X8Y9|A5X8Y9_ARATH Low-phosphate root 1 OS=Arabidopsis thali...    42   0.020
tr|A5X8Y8|A5X8Y8_ARATH Low-phosphate root 1 OS=Arabidopsis thali...    42   0.020
tr|Q9AWU4|Q9AWU4_ORYSJ Putative spore coat protein (Os01g0126100...    41   0.026
tr|A3A6E0|A3A6E0_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.026
tr|A2ZNS9|A2ZNS9_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.026
tr|A2WK65|A2WK65_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.026
tr|Q5ZDZ9|Q5ZDZ9_ORYSJ Putative spore coat protein OS=Oryza sati...    37   0.65 
tr|B8LRY9|B8LRY9_PICSI Putative uncharacterized protein OS=Picea...    37   0.65 
tr|Q7F757|Q7F757_ORYSJ Putative spore coat protein-like protein ...    35   2.5  
tr|Q5ZE01|Q5ZE01_ORYSJ cDNA clone:002-149-C02, full insert seque...    35   2.5  
tr|B8AD16|B8AD16_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2ZNT5|A2ZNT5_ORYSJ cDNA, clone: J100045I20, full insert sequ...    35   2.5  
tr|A2ZNT4|A2ZNT4_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2WK73|A2WK73_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2WK72|A2WK72_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|Q8CXJ7|Q8CXJ7_OCEIH Spore coat protein (Outer) OS=Oceanobacil...    34   3.2  

>tr|A9U4M8|A9U4M8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_156291 PE=4 SV=1
          Length = 555

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 10/61 (16%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEV--KIIS--------TMSPSLLSIDMLKLWK 44
           KLHRDLP T LYA+GT+ E+A Y GPT+EV   ++S        T S  +L++D   +W 
Sbjct: 1   KLHRDLPPTTLYAYGTTYESASYPGPTIEVIENVVSHIRWENHITDSQHMLALDKSIMWA 60

Query: 43  N 41
           N
Sbjct: 61  N 61


>tr|A9S0U0|A9S0U0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122573 PE=4 SV=1
          Length = 542

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -2

Query: 202 IDQKLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKNSVHQQ 26
           I QKLHRDLP T LYA+GT+  TA Y GPTLE         ++ ++     W+N +H +
Sbjct: 35  IKQKLHRDLPPTTLYAYGTTARTASYPGPTLE---------AIQNVTSHIRWENHIHDK 84


>tr|A2ZNT1|A2ZNT1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000203 PE=4 SV=1
          Length = 550

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = -2

Query: 208 IDIDQKLHRDLPSTALYAFGTSQETAQYTGPTLE 107
           I+ ++K HRDLP+T ++A+GTS+ETA   GPT+E
Sbjct: 27  INPEEKFHRDLPATRVFAYGTSKETATVPGPTIE 60


>tr|Q5ZE07|Q5ZE07_ORYSJ cDNA clone:J023145F10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0409B08.2 PE=2 SV=1
          Length = 598

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLE 107
           K HRDLP+T ++A+GTS+ETA   GPT+E
Sbjct: 80  KFHRDLPATRVFAYGTSKETATVPGPTIE 108


>tr|B8AD14|B8AD14_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00218 PE=4 SV=1
          Length = 589

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLE 107
           K HRDLP+T ++A+GTS+ETA   GPT+E
Sbjct: 71  KFHRDLPATRVFAYGTSKETATVPGPTIE 99


>tr|A7P3J5|A7P3J5_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030465001
           PE=4 SV=1
          Length = 577

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKN 41
           K HRDLP T ++A+GTS  TA   GPT+E         +L  +D    W+N
Sbjct: 75  KFHRDLPPTRVFAYGTSNNTATVPGPTIE---------ALYGVDTYVTWRN 116


>tr|A7P3J2|A7P3J2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030462001
           PE=4 SV=1
          Length = 194

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKN 41
           K HRDLP T ++A+GTS  TA   GPT+E         +L  +D    W+N
Sbjct: 75  KFHRDLPPTRVFAYGTSNNTATVPGPTIE---------ALYGVDTYVTWRN 116


>tr|A5AYW5|A5AYW5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028234 PE=4 SV=1
          Length = 573

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKN 41
           K HRDLP T ++A+GTS  TA   GPT+E         +L  +D    W+N
Sbjct: 71  KFHRDLPPTRVFAYGTSNNTATVPGPTIE---------ALYGVDTYVTWRN 112


>tr|Q9C9A4|Q9C9A4_ARATH Spore coat protein-like protein; 24980-21957
           OS=Arabidopsis thaliana GN=F23N20.3 PE=4 SV=1
          Length = 591

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKN 41
           K HRDLP+T ++A+GTS+ +A   GPT+E         ++  +D    W+N
Sbjct: 80  KFHRDLPATPVFAYGTSKRSATVPGPTIE---------AVYGVDTYVTWRN 121


>tr|Q949X9|Q949X9_ARATH Putative spore coat protein OS=Arabidopsis
           thaliana GN=At1g71040 PE=2 SV=1
          Length = 581

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 193 KLHRDLPSTALYAFGTSQETAQYTGPTLEVKIISTMSPSLLSIDMLKLWKN 41
           K HRDLP+T ++A+GTS+ +A   GPT+E         ++  +D    W+N
Sbjct: 80  KFHRDLPATPVFAYGTSKRSATVPGPTIE---------AVYGVDTYVTWRN 121