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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916479
Clone id YMU001_000088_B06
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTGGTTTCGTGTGCGCAATGACATTCTAGTTGCTGGACGCAAGTGTTGAGTCTCTCTCT
TTTCCATCAGTACTCTGTGTGTATTAACAGGTTGTAGATTTCATACCACCCTTTACTGTG
TACAGGCCGGTTATATGGTTCTATCGACGGGATAAGACACTTTTTCCTCAAAGAGTGCGT
CGTGGATTGTTGTGGGCGAAAGGATATAGAGTTAAGCACTATGGCAGAAAGGAAAGACGA
AGGTTCTAAAAAGGAAGCATCCTCTTACAGTGGGCAGGAGGAGCAAATGGTTGTTGGCAA
AGGGAAGCGACCCATGGAGCCAGGGGATGAGGATCTTTTGTTCAAAGCTCGGTTCTTGAA
GATCGTGGATATCTTTGAGTGAATGGCTCAAAATCCGAAGTTACAGAAGTACTTACAGGC
TCCTAAACAGGATGCCTCTCCCCTACCACTTGAAA
■■Homology search results ■■ -
sp_hit_id Q702N8
Definition sp|Q702N8|XIRP1_HUMAN Xin actin-binding repeat-containing protein 1 OS=Homo sapiens
Align length 76
Score (bit) 33.1
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916479|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B06.
         (455 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q702N8|XIRP1_HUMAN Xin actin-binding repeat-containing protei...    33   0.58 
sp|Q9LVK9|ALA7_ARATH Putative phospholipid-transporting ATPase 7...    31   2.2  
sp|A7SL20|U399_NEMVE UPF0399 protein v1g245966 OS=Nematostella v...    30   6.4  
sp|Q1AUL2|TATA_RUBXD Sec-independent protein translocase protein...    30   6.4  
sp|A5WHX7|RPPH_PSYWF RNA pyrophosphohydrolase OS=Psychrobacter s...    30   6.4  
sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 OS=Ratt...    30   6.4  
sp|P23485|FECR_ECOLI Protein fecR OS=Escherichia coli (strain K1...    30   6.4  
sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapi...    29   8.4  
sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus muscul...    29   8.4  

>sp|Q702N8|XIRP1_HUMAN Xin actin-binding repeat-containing protein 1
            OS=Homo sapiens GN=XIRP1 PE=1 SV=1
          Length = 1843

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 239  EGSKKEASSYSGQEEQMVVGKGK----RPMEPGDEDLLFKARFLKIVDIFE*MAQNPKLQ 406
            + ++K+  S+SGQ+   V+GK +     P  PG  DLL   + L++            L 
Sbjct: 1015 QNTEKQEDSHSGQKGMAVLGKSEGATTTPPGPGAPDLLAAMQSLRMATAEAQSLHQQVLN 1074

Query: 407  KYLQAPKQDASPLPLE 454
            K+ Q P   A+  P++
Sbjct: 1075 KHKQGPTPTATSNPIQ 1090


>sp|Q9LVK9|ALA7_ARATH Putative phospholipid-transporting ATPase 7
           OS=Arabidopsis thaliana GN=ALA7 PE=2 SV=2
          Length = 1247

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 203 DIELSTMAERKDEGSKKEASSYSG--QEEQMVVGKGKRPMEPGDEDLLFKARFLKI 364
           DIEL T+    DEG + +++   G   E+Q ++G G    EP  +D+L   R L +
Sbjct: 497 DIELETVITATDEGDQTQSTGIKGFSFEDQRLMG-GNWLNEPNSDDILMFLRILAV 551


>sp|A7SL20|U399_NEMVE UPF0399 protein v1g245966 OS=Nematostella
           vectensis GN=v1g245966 PE=3 SV=1
          Length = 247

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +2

Query: 230 RKDEGSKKEASSYSGQEEQMVVGKGKRPMEPGDEDLLFKARFLKIVDIFE*MAQNPKLQK 409
           RK   +K+E+     + E+ +V KGK+P      +L    + L++ + ++ +    KLQK
Sbjct: 167 RKSAEAKRESKKKIKETERELVQKGKKPFYLRKSEL----KKLELAEKYKELKSKGKLQK 222

Query: 410 YL 415
           YL
Sbjct: 223 YL 224


>sp|Q1AUL2|TATA_RUBXD Sec-independent protein translocase protein
           tatA/E homolog OS=Rubrobacter xylanophilus (strain DSM
           9941 / NBRC 16129) GN=tatA PE=3 SV=1
          Length = 92

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 200 KDIELSTMAERKDEGSKKEA-SSYSGQEEQMVVGKGKRPMEPG 325
           +++E     E KDEG KKEA +S  G+EEQ     G+   + G
Sbjct: 50  EELEEKKGEEEKDEGGKKEAEASGRGEEEQQARAAGEAGRKQG 92


>sp|A5WHX7|RPPH_PSYWF RNA pyrophosphohydrolase OS=Psychrobacter sp.
           (strain PRwf-1) GN=rppH PE=3 SV=1
          Length = 173

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 KHPLTVGRRSKWLLAKGSDPWSQGMRIFCSK 347
           +HPL +G++ KW L K  +P ++ +R   +K
Sbjct: 88  QHPLCIGQKQKWFLLKLDEPNTEHIRFDTAK 118


>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 OS=Rattus
           norvegicus GN=Slc24a1 PE=2 SV=1
          Length = 1181

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +2

Query: 194 GRKDIELSTMAERKDEGSKKEASSYSGQEEQMVVGKGKRPMEPGDE 331
           G+KD E  T AERK++G ++E  +  G+E+Q    +G+   E  DE
Sbjct: 735 GKKDEEGETEAERKEDGQEEETET-KGKEKQ----EGETESEGKDE 775


>sp|P23485|FECR_ECOLI Protein fecR OS=Escherichia coli (strain K12)
           GN=fecR PE=4 SV=1
          Length = 317

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +1

Query: 208 RVKHYGRKERRRF*KGSILLQWAGGANGCWQREATHGAR 324
           R  H  R  RR   KG +LL  AGG    WQ E   G R
Sbjct: 70  RALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLR 108


>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens
           GN=PRPF39 PE=1 SV=3
          Length = 669

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 140 SIDGIRHFFLKECVVDCCGRKDIELSTMAERKDEGSKKEASSYSGQEEQMVVG 298
           SI+G+RH F + C +    +  + +   A  + +G+  EA +     E+ V+G
Sbjct: 401 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLG 453


>sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus musculus
           GN=Nsbp1 PE=1 SV=2
          Length = 406

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 197 RKDIELSTMAERKDEGSKKEASSYSG---QEEQMVVGKGKRPMEPGDEDL 337
           + D E  T  E++ +   KEA    G   +EE   VGK  +P E G EDL
Sbjct: 199 KDDKEGDTGTEKEVKEQNKEAEEDDGKCKEEENKEVGKEGQPEEDGKEDL 248
tr_hit_id A9BIT4
Definition tr|A9BIT4|A9BIT4_PETMO M20/DapE family protein YgeY OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
Align length 86
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916479|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B06.
         (455 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BIT4|A9BIT4_PETMO M20/DapE family protein YgeY OS=Petrotoga...    34   4.2  
tr|A8P966|A8P966_BRUMA Solute carrier family 40, member 1, putat...    33   7.1  
tr|Q9P563|Q9P563_NEUCR Related to mutanase (MutA) OS=Neurospora ...    33   9.3  
tr|Q7RV24|Q7RV24_NEUCR Putative uncharacterized protein OS=Neuro...    33   9.3  
tr|Q6VBJ3|Q6VBJ3_CANGA Epa4p OS=Candida glabrata GN=EPA4 PE=4 SV=1     33   9.3  

>tr|A9BIT4|A9BIT4_PETMO M20/DapE family protein YgeY OS=Petrotoga
           mobilis (strain DSM 10674 / SJ95) GN=Pmob_1729 PE=4 SV=1
          Length = 400

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 125 GRLYGSIDGIRHFFLKECVVDCCGRKDIELSTMAERKDEGSKKEASSYSGQEE-QMVVGK 301
           G + G I   +H    +  +D  G  DI L                 Y G E+ +++VG+
Sbjct: 59  GNILGYIGHGKHLIAMDAHIDTVGIGDINLWNY------------DPYKGYEDDEIIVGR 106

Query: 302 GKRPMEPGDEDLLFKARFLKIVDIFE 379
           G    E G   +++ AR +K +D+F+
Sbjct: 107 GASDQEGGMASMVYGARIIKDLDLFD 132


>tr|A8P966|A8P966_BRUMA Solute carrier family 40, member 1, putative
           OS=Brugia malayi GN=Bm1_19595 PE=4 SV=1
          Length = 638

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 171 LRKKCLIPSIEPYNRPVHSKGWYEIYNLLIH 79
           LR+K L+P  EPY   V + GW +I  LLIH
Sbjct: 64  LRRKLLVPQTEPYTCVVSATGW-DIERLLIH 93


>tr|Q9P563|Q9P563_NEUCR Related to mutanase (MutA) OS=Neurospora
           crassa GN=B9J10.180 PE=4 SV=1
          Length = 883

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 453 SSGRGEASCLGACKYFCNFGF*AIHS 376
           +SG GE    G C + CNFGF  IHS
Sbjct: 546 TSGVGEGGLGGLCSFSCNFGFCPIHS 571


>tr|Q7RV24|Q7RV24_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU08473 PE=4 SV=2
          Length = 851

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 453 SSGRGEASCLGACKYFCNFGF*AIHS 376
           +SG GE    G C + CNFGF  IHS
Sbjct: 514 TSGVGEGGLGGLCSFSCNFGFCPIHS 539


>tr|Q6VBJ3|Q6VBJ3_CANGA Epa4p OS=Candida glabrata GN=EPA4 PE=4 SV=1
          Length = 1416

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = -3

Query: 378 SKISTIFKNRALNKRSSSPGSMGRFPLPTTICSSCPL*EDASFLEPSSFLSAIVLNSISF 199
           S  S+   + + +  SSS  S    P P++  SS      +S    SS  S+   +S S 
Sbjct: 406 SSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 465

Query: 198 RPQQSTTHSLRKKCLIPSIEPYNRPV 121
            P  S++ S       PSI+P ++PV
Sbjct: 466 SPSSSSSSSSSSSSSSPSIQPSSKPV 491