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NBDC - LSDB Archive
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BP916482
Clone id YMU001_000088_B09
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTATAACCCACATGCACATTGAGCAGGGACTAGCACAGGCTTTATGTGCCACATGGTG
AAGCCTTCATAAGCATCCCAAAGGAGGTGATAACTTCCCCCATTGTTGGCGATGGCTCTT
TGCCTGCGGGCGCTACATTCTAACAATTGTCAGTGCTACTAGCTTGTGGTGGTGTTGTCG
GGCGGCGCTGGTAGTGCACAGTAGGTGATGATGTGGCATGCTTCTCATGGGTGTTCCAAC
GTGCCCATAAACAGGAAAACCTTTTGAGGGTAACAAGGGGGGGTCCCACGGGGTTGTCAC
GCTGCCATGATGACAAGGGATCCCTCCCGCATGACTTGGAGAACAACGGAGGAAAAAATA
GCGGCATTGCACACAATGGAGCTAAAAA
■■Homology search results ■■ -
sp_hit_id Q2RFJ5
Definition sp|Q2RFJ5|Y2512_MOOTA UPF0272 protein Moth_2512 OS=Moorella thermoacetica (strain ATCC 39073)
Align length 52
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916482|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B09.
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2RFJ5|Y2512_MOOTA UPF0272 protein Moth_2512 OS=Moorella ther...    32   1.3  
sp|Q80YA8|CRUM2_MOUSE Crumbs homolog 2 OS=Mus musculus GN=Crb2 P...    32   1.3  
sp|Q2N806|KATG_ERYLH Catalase-peroxidase OS=Erythrobacter litora...    31   1.7  
sp|Q96J92|WNK4_HUMAN Serine/threonine-protein kinase WNK4 OS=Hom...    30   2.9  
sp|Q5NCX5|K1787_MOUSE NHR domain-containing protein KIAA1787 OS=...    30   2.9  
sp|Q9CWU2|ZDH13_MOUSE Probable palmitoyltransferase ZDHHC13 OS=M...    30   4.9  
sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16 OS=Asper...    30   4.9  
sp|P54734|PKNA_ANASP Serine/threonine-protein kinase pknA OS=Ana...    29   6.4  
sp|B0KSC6|TRUD_PSEPG tRNA pseudouridine synthase D OS=Pseudomona...    29   6.5  
sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabid...    29   8.4  
sp|Q9NLA6|OAF_DROME Out at first protein OS=Drosophila melanogas...    29   8.4  
sp|Q8C7X2|K0090_MOUSE Uncharacterized protein KIAA0090 OS=Mus mu...    29   8.4  
sp|Q53SZ7|CB053_HUMAN Uncharacterized protein C2orf53 OS=Homo sa...    29   8.4  
sp|Q3YJT4|PT1K2_SOLTU Patatin-1-Kuras 2 OS=Solanum tuberosum GN=...    29   8.4  
sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=...    29   8.4  
sp|Q2MY59|PATA2_SOLTU Patatin group A-2 OS=Solanum tuberosum PE=...    29   8.4  
sp|Q2MY60|PAT02_SOLTU Patatin-02 OS=Solanum tuberosum GN=StPat14...    29   8.4  
sp|Q2MY50|PAT01_SOLTU Patatin-01 OS=Solanum tuberosum PE=2 SV=1        29   8.4  

>sp|Q2RFJ5|Y2512_MOOTA UPF0272 protein Moth_2512 OS=Moorella
           thermoacetica (strain ATCC 39073) GN=Moth_2512 PE=3 SV=1
          Length = 396

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 339 PSHAGGIPCHHGSVTTPWDPPLLPSKGFPVYGHVGTPMRSMPHHHLLCTTSA 184
           P+ +G + C HG +  P    L   +G+PVYG         P    L TT A
Sbjct: 150 PAGSGWVDCRHGKLPVPAPATLYLLQGYPVYGTEDKAELVTPTGAALITTLA 201


>sp|Q80YA8|CRUM2_MOUSE Crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2
           SV=3
          Length = 1282

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -2

Query: 345 CSPSHAGGI---PCHHGSVTTPWDPPLLPSKGFPVYGHVGTPMRSMPHHHLLCTTSAARQ 175
           C PS  GG    PCHHG++  P  P     + + V G  G      PH  L     A+R 
Sbjct: 67  CEPSELGGCATQPCHHGALCVPQGPDPNSFRCYCVPGFQG------PHCELDIDECASRP 120

Query: 174 HHH 166
             H
Sbjct: 121 CQH 123


>sp|Q2N806|KATG_ERYLH Catalase-peroxidase OS=Erythrobacter litoralis
           (strain HTCC2594) GN=katG PE=3 SV=1
          Length = 740

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 229 HEKHATSSPTVHYQRRPTTPPQASSTDNC*NVAPAGKEPSPTMGEVITSFGMLMKASP 56
           +E   T SP   YQ  P  P +A       ++AP  ++PS  +  ++T+  M +K  P
Sbjct: 340 YEYELTQSPAGAYQWTPVDPEEA-------DMAPDARDPSKKVPTIMTTADMALKRDP 390


>sp|Q96J92|WNK4_HUMAN Serine/threonine-protein kinase WNK4 OS=Homo
            sapiens GN=WNK4 PE=1 SV=1
          Length = 1243

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
 Frame = -1

Query: 379  PLCAMPLFFPPLFSKSCGRDPLSSWQRDNPVGPPLVTLKRFSCLWAR------------- 239
            P  ++P   PP FS +C +  LSS     P  PP  +   F    A              
Sbjct: 880  PWSSLPTTSPPTFSPTCSQVTLSS-----PFFPPCPSTSSFPSTTAAPLLSLASAFSLAV 934

Query: 238  WNTHEKHATSSPTVHYQRRPTTPPQASSTDNC*NVAPAGKE-PSPTMGEV 92
                +   + SP +  Q  P  P    S      VAP G+E PSP   EV
Sbjct: 935  MTVAQSLLSPSPGLLSQSPPAPPSPLPSLPLPPPVAPGGQESPSPHTAEV 984


>sp|Q5NCX5|K1787_MOUSE NHR domain-containing protein KIAA1787 OS=Mus
            musculus GN=Kiaa1787 PE=2 SV=1
          Length = 1563

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 237  QRAHKQENLLRVTRGGPTGLSRCHDDKGSLPHDLENNGGKNSGIAHN 377
            QR +   NL R+  G   G+ RC DD   +  D E+ G   +GIA N
Sbjct: 1022 QRMNYGRNLERLGVGSRVGIRRCADDTMHILVDGEDMGPAAAGIAKN 1068


>sp|Q9CWU2|ZDH13_MOUSE Probable palmitoyltransferase ZDHHC13 OS=Mus
           musculus GN=Zdhhc13 PE=2 SV=2
          Length = 622

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 WRWLFACGRYILTIVSATSLW 169
           WRWL  C  ++L I+S  +LW
Sbjct: 284 WRWLHKCELFLLLILSMITLW 304


>sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16
           OS=Aspergillus oryzae GN=sec16 PE=3 SV=1
          Length = 1843

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -1

Query: 214 TSSPTVHYQRRPTTPPQA----SSTDNC*NVAPAGKEPSPTMGEVITS 83
           TSSP  H+++    PP+     S+ ++  + AP G +P P   +V  S
Sbjct: 711 TSSPLAHHEKVSYQPPEGLAIRSAPESASSYAPNGMQPRPNQQDVSNS 758


>sp|P54734|PKNA_ANASP Serine/threonine-protein kinase pknA
           OS=Anabaena sp. (strain PCC 7120) GN=pknA PE=3 SV=2
          Length = 564

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -1

Query: 211 SSPTVHYQRRP--TTPPQASSTDNC*NVAPAGKEPSP 107
           SSPTV YQ+ P  TTPP A+ T N   V+P G  P+P
Sbjct: 288 SSPTVPYQQPPVVTTPPFATQT-NTVAVSP-GTAPTP 322


>sp|B0KSC6|TRUD_PSEPG tRNA pseudouridine synthase D OS=Pseudomonas
           putida (strain GB-1) GN=truD PE=3 SV=1
          Length = 352

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 39  RLYVPHGEAFISIPKEVI-----TSPIVGDGSLPAGATF*QLSVLLACGGVVGRRW*CTV 203
           R + P GEA  + P+  I     T P+ G+G+ PAGA   QL         VG R     
Sbjct: 233 RSFFPAGEAECADPRLAILDLHPTGPMWGEGASPAGAATAQLE------NAVGAR----- 281

Query: 204 GDDVACFSWVFQRAHKQE-NLLRVTRGGPT 290
               A   W+ Q     E  +LR+  GG T
Sbjct: 282 --QPALCQWLAQAGMDHERRILRLPIGGLT 309


>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410
           OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1
          Length = 279

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 286 GPPLVTLKRFSCLWARWNTHEKHATSSPTVHYQRRPTTPPQAS 158
           G P   LK    +W   N H    + SP  H+Q  P  PPQ+S
Sbjct: 233 GVPRQVLK----VWLHNNKHTLGKSPSPLHHHQAPPPPPPQSS 271
tr_hit_id Q9XTM8
Definition tr|Q9XTM8|Q9XTM8_DROME RADHA protein OS=Drosophila melanogaster
Align length 50
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916482|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_B09.
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XTM8|Q9XTM8_DROME RADHA protein OS=Drosophila melanogaster ...    37   0.49 
tr|Q9VBR7|Q9VBR7_DROME Rha OS=Drosophila melanogaster GN=rha PE=...    37   0.49 
tr|B4QUV5|B4QUV5_DROSI GD21214 OS=Drosophila simulans GN=GD21214...    37   0.49 
tr|B4IJM7|B4IJM7_DROSE GM17842 OS=Drosophila sechellia GN=GM1784...    37   0.49 
tr|B4PTL5|B4PTL5_DROYA GE23598 OS=Drosophila yakuba GN=GE23598 P...    35   1.4  
tr|B4PYZ3|B4PYZ3_DROYA GE15879 OS=Drosophila yakuba GN=GE15879 P...    35   1.9  
tr|B2AAS5|B2AAS5_PODAN Predicted CDS Pa_1_5010 OS=Podospora anse...    34   3.2  
tr|Q9CVQ3|Q9CVQ3_MOUSE Putative uncharacterized protein (Fragmen...    34   4.2  
tr|B3NWE4|B3NWE4_DROER GG19261 OS=Drosophila erecta GN=GG19261 P...    34   4.2  
tr|A7QY75|A7QY75_VITVI Chromosome undetermined scaffold_240, who...    33   5.5  
tr|A7QQD4|A7QQD4_VITVI Chromosome undetermined scaffold_142, who...    33   5.5  
tr|A5BEX0|A5BEX0_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|Q5C7L8|Q5C7L8_SCHJA SJCHGC09478 protein (Fragment) OS=Schisto...    33   5.5  
tr|B3NGK6|B3NGK6_DROER GG15405 OS=Drosophila erecta GN=GG15405 P...    33   5.5  
tr|B4NLT9|B4NLT9_DROWI GK18345 OS=Drosophila willistoni GN=GK183...    33   7.1  
tr|B4N7D7|B4N7D7_DROWI GK21121 OS=Drosophila willistoni GN=GK211...    33   7.1  
tr|B3P6K3|B3P6K3_DROER GG11401 OS=Drosophila erecta GN=GG11401 P...    33   7.1  
tr|Q2TZD6|Q2TZD6_ASPOR Low-complexity OS=Aspergillus oryzae GN=A...    33   7.1  
tr|B8NBW6|B8NBW6_ASPFL Involucrin repeat protein OS=Aspergillus ...    33   7.1  
tr|Q2QSW1|Q2QSW1_ORYSJ Retrotransposon protein, putative, unclas...    33   7.2  
tr|Q4SU44|Q4SU44_TETNG Chromosome undetermined SCAF14025, whole ...    33   9.3  
tr|Q17002|Q17002_ANOGA Putative nucleic acid binding protein (Fr...    33   9.3  
tr|A6RN83|A6RN83_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   9.3  
tr|A4QY24|A4QY24_MAGGR Putative uncharacterized protein OS=Magna...    33   9.3  

>tr|Q9XTM8|Q9XTM8_DROME RADHA protein OS=Drosophila melanogaster
           GN=rha PE=2 SV=1
          Length = 1332

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 276 LLPSKGFPVYGHVGT---PMRSMPHHHLLCTTSAARQHHHK-LVALTIVR 139
           LLP +G PV G VG+   P   M  H L+CT+S  R H  + L+ LTI++
Sbjct: 125 LLPVRGLPVLGTVGSHNSPHLKMFWHKLICTSSEFRSHKPEVLLMLTIIK 174


>tr|Q9VBR7|Q9VBR7_DROME Rha OS=Drosophila melanogaster GN=rha PE=2
           SV=1
          Length = 1332

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 276 LLPSKGFPVYGHVGT---PMRSMPHHHLLCTTSAARQHHHK-LVALTIVR 139
           LLP +G PV G VG+   P   M  H L+CT+S  R H  + L+ LTI++
Sbjct: 125 LLPVRGLPVLGTVGSHNSPHLKMFWHKLICTSSEFRSHKPEVLLMLTIIK 174


>tr|B4QUV5|B4QUV5_DROSI GD21214 OS=Drosophila simulans GN=GD21214
           PE=4 SV=1
          Length = 1352

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 276 LLPSKGFPVYGHVGT---PMRSMPHHHLLCTTSAARQHHHK-LVALTIVR 139
           LLP +G PV G VG+   P   M  H L+CT+S  R H  + L+ LTI++
Sbjct: 129 LLPVRGLPVLGTVGSHNSPHLKMFWHKLICTSSEFRSHKPEVLLMLTIIK 178


>tr|B4IJM7|B4IJM7_DROSE GM17842 OS=Drosophila sechellia GN=GM17842
           PE=4 SV=1
          Length = 876

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 276 LLPSKGFPVYGHVGT---PMRSMPHHHLLCTTSAARQHHHK-LVALTIVR 139
           LLP +G PV G VG+   P   M  H L+CT+S  R H  + L+ LTI++
Sbjct: 129 LLPVRGLPVLGTVGSQNSPHLKMFWHKLICTSSEFRSHKPEVLLMLTIIK 178


>tr|B4PTL5|B4PTL5_DROYA GE23598 OS=Drosophila yakuba GN=GE23598 PE=4
           SV=1
          Length = 1114

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 276 LLPSKGFPVYGHVGT---PMRSMPHHHLLCTTSAARQHHHK-LVALTIVR 139
           LLP +G PV G VG+   P   M  H L+CT+S  R H  + L+ L I++
Sbjct: 121 LLPVRGLPVLGTVGSENSPHLKMLWHKLICTSSEFRSHKPEVLLMLAIIK 170


>tr|B4PYZ3|B4PYZ3_DROYA GE15879 OS=Drosophila yakuba GN=GE15879 PE=4
            SV=1
          Length = 2480

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = -1

Query: 376  LCAMPLFFPPLFSKSCGRDPLSSWQRDNPVGPPLVTLKRFSCLWARWNTHEKHATSSPTV 197
            +C  P  +PP FS    +    +    +P GPP     R      R+  ++      P  
Sbjct: 1367 MCYSPPTYPPYFSSKVYQPSHPAHPAAHPQGPPPPGAYR------RYPYYQHAGPPPPHE 1420

Query: 196  HYQRRPTTPPQASSTDNC*NVAPAGKEPSPTMGEVITSFGMLMKASPCGT 47
             Y+++P  PP +S T +     PA ++P  +    + + G     +P G+
Sbjct: 1421 LYEQQPPPPPVSSGTVS----GPAQQQPPTSSSAAVGAGGAAAAGAPSGS 1466


>tr|B2AAS5|B2AAS5_PODAN Predicted CDS Pa_1_5010 OS=Podospora
           anserina PE=4 SV=1
          Length = 527

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/60 (40%), Positives = 27/60 (45%)
 Frame = -2

Query: 339 PSHAGGIPCHHGSVTTPWDPPLLPSKGFPVYGHVGTPMRSMPHHHLLCTTSAARQHHHKL 160
           PSH GG+P HHG +  P    L    G P +G  G P      HH   T      HHHKL
Sbjct: 459 PSHHGGLP-HHGGL--PHHGGLPHHGGLPHHG--GLPHHGGLPHHGGLTHHEGPPHHHKL 513


>tr|Q9CVQ3|Q9CVQ3_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=1700084K02Rik PE=2 SV=1
          Length = 118

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -1

Query: 382 APLCAMPLFFPPLFSKSC-GRDPLSSWQRDNPVGPPLVTLKRFSCLWA---RWNTHEKHA 215
           AP C++PL  PP  S    GR  ++S QR    GP  VT +R + L A   RW      A
Sbjct: 25  APTCSLPLGVPPAHSHWWPGRAAVTSPQRRRAGGPIRVTPRRPASLSAASVRWPPAPFPA 84

Query: 214 TSSPTVHYQRRPTTPPQASST 152
            + P     RRP  P Q S +
Sbjct: 85  LAPPGGRLARRP--PRQGSGS 103


>tr|B3NWE4|B3NWE4_DROER GG19261 OS=Drosophila erecta GN=GG19261 PE=4
            SV=1
          Length = 2499

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/110 (21%), Positives = 45/110 (40%)
 Frame = -1

Query: 376  LCAMPLFFPPLFSKSCGRDPLSSWQRDNPVGPPLVTLKRFSCLWARWNTHEKHATSSPTV 197
            +C  P  +PP FS    +    +    +P GPP     R      R+  ++      P  
Sbjct: 1393 MCYSPPTYPPYFSSKVYQPSHPAHPAAHPQGPPPPGAYR------RYPYYQHAGPPPPHE 1446

Query: 196  HYQRRPTTPPQASSTDNC*NVAPAGKEPSPTMGEVITSFGMLMKASPCGT 47
             Y+++P  PP +S + +     PA ++P  +    + + G     +P G+
Sbjct: 1447 LYEQQPPPPPVSSGSVS----GPAQQQPPTSSSAAVGAAGAAAAGAPSGS 1492


>tr|A7QY75|A7QY75_VITVI Chromosome undetermined scaffold_240, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009593001 PE=4 SV=1
          Length = 559

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = -1

Query: 349 PLFSKSCGRDPLSSWQRDNPVGPPLVTLKRFSCLWARWNTHEKHATSSPTVHYQRRPTTP 170
           PL   SCG   LSS    +PV P L T ++ S             + S T H+  +P   
Sbjct: 159 PLNLSSCG---LSSTTVSSPVQPKLETHQQLS---------SSSCSQSSTTHFYPKPVQT 206

Query: 169 PQASSTDNC*NVAPAG 122
           PQ  S+++C    P+G
Sbjct: 207 PQPLSSNSCGLSRPSG 222