BP916492
Clone id YMU001_000088_C07
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGTGAGCTTGGGGAGCGAAGTCATGTCCTGGGAATGGATTTAGATGTAGAGGAAGAAGAC
AGAGCACCAGAACAATGTGATACCACCTCGGATAATTCATTGAGACGAGTAGCACAATTG
CTTGGGGTTGTAGCTACTTGACCATTGTTGACAAGAAGGAGGTTGCAGTTTTTTGATTAA
GGAGAAGGTCTATTATCATCACCTCCAACGCCAACAAACATGGCAGCTCAAATCACAAAC
CTCAAGGTCAAGTTCGGACAGCTTCAGGGCAAGAAAAATCAAGACCTTGATTGCCATGTC
ACCCAATTCGAGATCCAATGGAGGGAAGGCGGGTTCGGCGGCCATATAGTGCCAATTAGA
AGATGCACCAGTTAGAGCAACATTAGAAGGTAAAGCTATGTCTTAGTTCACTTAGTTCCT
TGCTCCGGATTATACAGCCTTAAAGACCGGCTTCTTGGGAAGATCTGAAGGAAAAAGACA
CTTGATGATGTCTTGGCAAATACCAAGACCATCAAATAGAAATATATGCTGG
■■Homology search results ■■ -
sp_hit_id Q01107
Definition sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus
Align length 53
Score (bit) 32.3
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916492|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C07.
(532 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus GN=DSC1 PE=1 SV=1 32 1.5
sp|Q8R7Y7|TRUA_THETN tRNA pseudouridine synthase A OS=Thermoanae... 30 7.3
sp|Q96P20|NALP3_HUMAN NACHT, LRR and PYD domains-containing prot... 30 7.3
sp|Q92PG8|MURI_RHIME Glutamate racemase OS=Rhizobium meliloti GN... 30 7.3
sp|A6X191|GATB_OCHA4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 7.3
sp|P64198|GATB_BRUSU Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|B0CLM5|GATB_BRUSI Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|A5VQ81|GATB_BRUO2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|P64197|GATB_BRUME Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|A9MAS2|GATB_BRUC2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|Q57DK8|GATB_BRUAB Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5
sp|Q2YNL2|GATB_BRUA2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 9.5

>sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus GN=DSC1 PE=1 SV=1
Length = 893

Score = 32.3 bits (72), Expect = 1.5
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1

Query: 217 NMAAQITNLKVKFGQ---LQGKKNQDLDCHVTQFEIQWREGGFGGHIVPIRRC 366
N A+++ ++ + G+ L+G+++ D D + +I+ R G HI+P+R C
Sbjct: 613 NSASKLWTVETRDGKTAILRGRQDLDYDYYTVPIQIKDRHGASATHILPVRVC 665


>sp|Q8R7Y7|TRUA_THETN tRNA pseudouridine synthase A
OS=Thermoanaerobacter tengcongensis GN=truA PE=3 SV=1
Length = 240

Score = 30.0 bits (66), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2

Query: 452 FLGRSEGKRHLMMSWQIPRPSNRNICW 532
+ RS+ R+L+++ Q P P+ RN CW
Sbjct: 99 YSARSKRYRYLILNRQFPMPTMRNYCW 125


>sp|Q96P20|NALP3_HUMAN NACHT, LRR and PYD domains-containing protein 3
OS=Homo sapiens GN=NLRP3 PE=1 SV=2
Length = 1034

Score = 30.0 bits (66), Expect = 7.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2

Query: 306 LGDMAIKVLIFLAL----KLSELDLEVCDLSCHVCW 211
LGD IK+L L KL L+L+ C+L+ H CW
Sbjct: 922 LGDKGIKLLCEGLLHPDCKLQVLELDNCNLTSHCCW 957


>sp|Q92PG8|MURI_RHIME Glutamate racemase OS=Rhizobium meliloti
GN=murI PE=3 SV=1
Length = 277

Score = 30.0 bits (66), Expect = 7.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2

Query: 348 YMAAEPAFPPLDLELGDMAIKVLIFLALKLSELDLEVCDLSCHVCW 211
Y+A + FP E G + +V+ L+ELD E+C ++C+ +
Sbjct: 36 YVADDAGFPYGGWEEGALKERVIALFGRLLAELDPEICIIACNTAF 81


>sp|A6X191|GATB_OCHA4 Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gatB PE=3
SV=1
Length = 500

Score = 30.0 bits (66), Expect = 7.3
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPVSPEQLGAVID--LIKEGTISGKIAKDL------FEIVWNEGG 423


>sp|P64198|GATB_BRUSU Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Brucella suis GN=gatB PE=3
SV=1
Length = 500

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPISPAQLGAIID--LIKEGTISGKIAKDL------FEIVWNEGG 423


>sp|B0CLM5|GATB_BRUSI Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=gatB PE=3 SV=1
Length = 502

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPISPAQLGAIID--LIKEGTISGKIAKDL------FEIVWNEGG 423


>sp|A5VQ81|GATB_BRUO2 Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=gatB PE=3 SV=1
Length = 500

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPISPAQLGAIID--LIKEGTISGKIAKDL------FEIVWNEGG 423


>sp|P64197|GATB_BRUME Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Brucella melitensis
GN=gatB PE=3 SV=1
Length = 500

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPISPAQLGAIID--LIKEGTISGKIAKDL------FEIVWNEGG 423


>sp|A9MAS2|GATB_BRUC2 Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=gatB PE=3 SV=1
Length = 500

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1

Query: 181 GEGLLSSPPTPTNMAAQITNLKVKFGQLQGKKNQDLDCHVTQFEIQWREGG 333
G+ + SP +P + A I +K G + GK +DL FEI W EGG
Sbjct: 381 GKDIEESPISPAQLGAIID--LIKEGTISGKIAKDL------FEIVWNEGG 423


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916492|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C07.
(532 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******