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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916493
Clone id YMU001_000088_C08
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCCTCGGGGGAGTAAAAGCCTTTTCATGCCATGCCTTTTATTCCATGGTCCCTTGTTAG
TCAAAGCTTTGCAAGCAAATGACCGCCGCGGTCTGTCATATAGCCATAGCGAAGAGCCGA
CTGATAAAGAAGCTCAAATCTTCCATATGTTCATTGTACCAGACAGCCCATAATACACTT
GCCATAAACATGCAGGTTAATTGCAGTTTGACCTCAAAATATACCTTGTCTATATTTGAC
AAACTATCAGGTCCATACAGCAACGAGCGTATTGCACTTACTGTTCTTGCAAACCCTGTT
ACAAGCACCGAAAAGCACACTGCAAACGAAATGTAGCCCAGAGCTCTCCTTAAGACAATG
CCAGCCAGGCTGGTGCTGGAAAATATCCATTGGTCTGAGACAAATAAGGCCATGAAGGCC
TGCTTGAATATGTTAAAAGCTGTGACCTTTTCCGATTGACATTTTGCAAATAGGTCCTCA
CCTATGTCAATCATTTCTAAA
■■Homology search results ■■ -
sp_hit_id P57513
Definition sp|P57513|DCDA_BUCAI Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
Align length 46
Score (bit) 30.4
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916493|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C08.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57513|DCDA_BUCAI Diaminopimelate decarboxylase OS=Buchnera a...    30   4.8  
sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase ...    30   8.2  

>sp|P57513|DCDA_BUCAI Diaminopimelate decarboxylase OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=lysA PE=3 SV=1
          Length = 415

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 163 SGTMNIWKI*ASLSVGSSLWLYDRPRRSFACKALTNKGPWNKRHGM 26
           +G++++ K    +S G  +WL   PR  +     TN G  N +HG+
Sbjct: 119 AGSLDMLKQLGKISPGHHVWLRINPRFGYGHSKKTNTGGENSKHGI 164


>sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2
            domain-containing alpha polypeptide OS=Mus musculus
            GN=Pik3c2a PE=1 SV=2
          Length = 1686

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 28/105 (26%), Positives = 43/105 (40%)
 Frame = -2

Query: 482  GEDLFAKCQSEKVTAFNIFKQAFMALFVSDQWIFSSTSLAGIVLRRALGYISFAVCFSVL 303
            G+DLF   QS+KV  +    + F  L   D+ I     ++ + L   L    F V     
Sbjct: 717  GKDLFKPIQSKKVGTY----KNFFYLIKWDELIIFPIQISQLPLESVLHLTLFGVLNQS- 771

Query: 302  VTGFARTVSAIRSLLYGPDSLSNIDKVYFEVKLQLTCMFMASVLW 168
             +G +   +  R    GP++L  +    F+ K  LTC      LW
Sbjct: 772  -SGSSPDSNKQRK---GPEALGKVSLTLFDFKRFLTCGTKLLYLW 812
tr_hit_id A9SSI8
Definition tr|A9SSI8|A9SSI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 121
Score (bit) 65.5
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916493|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C08.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSI8|A9SSI8_PHYPA Predicted protein OS=Physcomitrella paten...    65   1e-09
tr|A4HMM0|A4HMM0_LEIBR Putative uncharacterized protein OS=Leish...    40   0.048
tr|A7MNE7|A7MNE7_ENTS8 Putative uncharacterized protein OS=Enter...    37   0.52 
tr|A7LZ50|A7LZ50_BACOV Putative uncharacterized protein OS=Bacte...    34   4.5  
tr|A1S5F2|A1S5F2_SHEAM Sugar (Glycoside-Pentoside-Hexuronide) tr...    33   5.7  
tr|Q76MR1|Q76MR1_TAEGU Metabotropic GluR2 (Fragment) OS=Taeniopy...    33   9.7  
tr|Q6CZ85|Q6CZ85_ERWCT Putative glycerol metabolic protein OS=Er...    33   9.7  
tr|A8BGC3|A8BGC3_GIALA Putative uncharacterized protein OS=Giard...    33   9.7  

>tr|A9SSI8|A9SSI8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234032 PE=4 SV=1
          Length = 379

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
 Frame = -2

Query: 491 IDIGEDLFAKCQSEKVTAFNIFKQAFMALFVSDQWIFSSTSLAGIVLRRALGYISFAVCF 312
           +++ + L   C S ++   N+    F  L      +F S+S  G++  R    +    C+
Sbjct: 188 VELTDRLVGNCSSNELLKPNLIFGQFQTLIAHQIMMFLSSSKTGMMFWRTALSVGLGFCY 247

Query: 311 SVLVTGFARTVSAIRSLLYGPDSLSNIDKVYFEVKLQLTCMFMASVLWAVW----YNEHM 144
           SV+VT F +  S IR  ++  D LS +D +YFE  LQ   +F+AS+    W    Y +H+
Sbjct: 248 SVIVTAFTKLASFIRFRVFVADELSEVDILYFEAHLQALFLFVASMFSFFWLDADYEQHL 307

Query: 143 E 141
           +
Sbjct: 308 D 308


>tr|A4HMM0|A4HMM0_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM34_V2.1910 PE=4 SV=1
          Length = 925

 Score = 40.4 bits (93), Expect = 0.048
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 399 LRPMDIFQHQPGWH--CLKESSGLHFVCSVLFGACNRVCKNSKCNTLVAVW 253
           L P D+ + +  WH  CL  S  +H    +L G C  + K  +C+T  AVW
Sbjct: 345 LMPADLREKRVSWHLHCLIASKEVHSAARLLLGTCRDISKGLRCDTAEAVW 395


>tr|A7MNE7|A7MNE7_ENTS8 Putative uncharacterized protein
           OS=Enterobacter sakazakii (strain ATCC BAA-894)
           GN=ESA_03880 PE=4 SV=1
          Length = 336

 Score = 37.0 bits (84), Expect = 0.52
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -2

Query: 485 IGEDLFAKCQSEKVTAFNIFKQAFMALFVSDQWIFSSTSLA-GIVLRRALGYISFAVCFS 309
           IGE   A+CQ+  +TA N+ K   MA   +D  IFS+T +  G +L       + A   +
Sbjct: 248 IGEQELARCQAMGITAGNVLKLDEMA--HNDNVIFSATGITKGDLLDGITRKGNIATTET 305

Query: 308 VLVTGFARTVSAIRSLLY 255
           +L+ G +RT+  I S+ Y
Sbjct: 306 LLIRGKSRTIRRIHSIHY 323


>tr|A7LZ50|A7LZ50_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_03125 PE=4
           SV=1
          Length = 500

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +1

Query: 289 ANPVTSTEKHTANEM*PRALLKTMPARLVLENIHWSETNKAMKACLNMLKAVTFSD 456
           A P TS++   AN+   +ALL    AR+ L N  W E  KA +  +N  K   FSD
Sbjct: 191 ALPATSSQTGRANKWAAKALL----ARVYLYNEMWEEAEKAAEEVINSKKYSLFSD 242


>tr|A1S5F2|A1S5F2_SHEAM Sugar (Glycoside-Pentoside-Hexuronide)
           transporter OS=Shewanella amazonensis (strain ATCC
           BAA-1098 / SB2B) GN=Sama_1401 PE=4 SV=1
          Length = 444

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
 Frame = -2

Query: 428 FKQAFMALFVSDQWIFSSTS----LAGIVLRRALG--YISFAVCFSVLVTGFART--VSA 273
           FK A  AL+ +DQW   S +    L G+VL+  L   Y+ + +    +++ F  +  V  
Sbjct: 214 FKAASKALWANDQWRVLSAAAIFLLTGLVLKSTLAIYYVKYFLGREDMISVFVTSGVVGN 273

Query: 272 IRSLLYGPDSLSNIDKVYFEVKLQLTCMFMASVLWAVWYNEHMEDLSFFISRLFAM 105
           I  +         + KV   ++LQL    +    W V  ++++  L F+I+  F +
Sbjct: 274 IFGVALAKKLADKMCKVKAYIRLQLIAAALCMAAWFVPADQYVLALVFYIAWNFTI 329


>tr|Q76MR1|Q76MR1_TAEGU Metabotropic GluR2 (Fragment) OS=Taeniopygia
           guttata PE=2 SV=1
          Length = 594

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 389 WIFSSTSLAGIVLRRALGY-ISFAVCFSVLVT---GFARTVSAIRSLLYGPDSLSNIDKV 222
           +IF +    G+   R LG   SFAVC+S L+T     AR  S ++  +  P  +S   +V
Sbjct: 451 FIFIAKPSTGVCTLRRLGLGTSFAVCYSALLTKTNRIARIFSGVKEGVQRPRFISPTSQV 510

Query: 221 YFEVKLQLTCMFMASVLW 168
              + L ++C  +  ++W
Sbjct: 511 VICMAL-ISCQLIIVIIW 527


>tr|Q6CZ85|Q6CZ85_ERWCT Putative glycerol metabolic protein
           OS=Erwinia carotovora subsp. atroseptica GN=glpX PE=4
           SV=1
          Length = 336

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -2

Query: 485 IGEDLFAKCQSEKVTAFNIFKQAFMALFVSDQWIFSSTSLA-GIVLRRALGYISFAVCFS 309
           IGED  A+C+   + A  + K   MA   +D  IFS+T +  G +L       + A   +
Sbjct: 248 IGEDELARCRQMGIEAGGVLKLDDMAR--NDNVIFSATGITKGDLLDGIARKGNMATTET 305

Query: 308 VLVTGFARTVSAIRSLLY 255
           +L+ G +RT+  I+S  Y
Sbjct: 306 LLIRGKSRTIRRIKSTHY 323


>tr|A8BGC3|A8BGC3_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_9823 PE=4 SV=1
          Length = 322

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 428 FKQAFMALFVSDQWIFSSTSLAGIVLRRALGYISFAVCFSVLVTGFARTVSAIRSLLYGP 249
           F   F A+++  QW F     A   L RA  Y +F +C+       A T+ A+R  +   
Sbjct: 161 FSDVFPAVYLDCQWKFDPALSADSPLSRAALYNAFYICYLQAAHQIANTLCALRDSVADN 220

Query: 248 DSLSN 234
            +L N
Sbjct: 221 KTLVN 225