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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916494
Clone id YMU001_000088_C09
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAGGAGTGTGACGTTTCAGATGGCAAGCCAGCGACCAATTTAACAAGCGAGTATCACA
GAATCGGGCCAAGGCTAAACATACTTCCCAACCTGACTGATTTTTATAGAATTAGCAGAC
TTTCATTAGAATTTGACAAAATAGAAATGACTTTTGTTAAAACGGGAGATTAAAGATCTT
TGCAATTACTCAGACTCTTTGAATTCATACTCTTGGCTATGACTCAAGACGGTTTCGAAG
TATGACAACATGCAATTTTTTGATGCGTAAAACAAGTTGTCAATCTTTTTCCTAAAAACA
ATACATGCATGGATTCTCATTGAGGAGAGCCATGGAAAGCTTGGGCGGGAGGTTGGTAGC
AGAAGGGCACAAAAGAAGGGGCATCTGTGTGGCTTTTCCCTCCTTCCATCTCCTGATTTA
GCCTCATTGTACATATGCTGTTTTTTCATTGGGAGAGTCTCCCCTTATGATTGTTGTAGC
CCTCTGTAGTAGAGGTGGTTTGTAGCCCTATGGGCAACTTCACTAACTTATAGAAGGATC
TCTCGGAAAAAAAAGGGGCATTGGAGTGAAA
■■Homology search results ■■ -
sp_hit_id Q5ZKD5
Definition sp|Q5ZKD5|RRP12_CHICK RRP12-like protein OS=Gallus gallus
Align length 74
Score (bit) 30.8
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916494|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C09.
         (571 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZKD5|RRP12_CHICK RRP12-like protein OS=Gallus gallus GN=RRP...    31   5.0  
sp|Q750L0|AEP3_ASHGO ATPase expression protein 3 OS=Ashbya gossy...    30   8.5  

>sp|Q5ZKD5|RRP12_CHICK RRP12-like protein OS=Gallus gallus GN=RRP12
           PE=2 SV=1
          Length = 1294

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 445 KNSICTMRLNQEM----EGGKSHTDAPSFVPFCYQPPAQAFHGSPQ*ESMHVLFLGKRLT 278
           ++ +C++    E     E  + H  APS   FC Q   +A        ++HVL L + L 
Sbjct: 259 QHGVCSVLRGSEFMFGDEAPEHHPAAPSSAKFCVQEIEKAGGTKEATTTLHVLALLRDLL 318

Query: 277 TCFTHQKI-ACCHT 239
            CF    +  CC T
Sbjct: 319 PCFPAAVLKTCCET 332


>sp|Q750L0|AEP3_ASHGO ATPase expression protein 3 OS=Ashbya gossypii
           GN=AEP3 PE=3 SV=1
          Length = 536

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 183 AKIFNLPF*QKSFLFCQILMKVC*FYKNQSGWEVCLALARFCD 55
           AK +++PF  K    C  + K+C  YK +S W++  +L R  D
Sbjct: 343 AKEYSIPFTPKLLRLC--ISKLCKEYKFESAWQLLTSLCRSTD 383
tr_hit_id B6PU89
Definition tr|B6PU89|B6PU89_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae
Align length 64
Score (bit) 35.4
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916494|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C09.
         (571 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PU89|B6PU89_BRAFL Putative uncharacterized protein (Fragmen...    35   2.2  
tr|B6NRM0|B6NRM0_BRAFL Putative uncharacterized protein (Fragmen...    33   8.5  
tr|B6XST5|B6XST5_9BIFI Putative uncharacterized protein OS=Bifid...    33   8.6  

>tr|B6PU89|B6PU89_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_256946 PE=4 SV=1
          Length = 142

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -3

Query: 449 MKKQHMYNEAKSGDGRREKPHRCP-------FFCALLLPTSRPSFPWLSSMRIHACIVFR 291
           MK + M +  K G GR EKP  CP         C   LP  RP+FP L S  I     ++
Sbjct: 80  MKGKRMMDMIKDG-GRLEKPSSCPEKIYTLMTSCWKTLPADRPTFPELRSSLIRIMQDYK 138

Query: 290 KKID 279
            +ID
Sbjct: 139 VRID 142


>tr|B6NRM0|B6NRM0_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_234943 PE=4 SV=1
          Length = 82

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = -3

Query: 506 ATNHLYYRGLQQS*GETLPMKKQHMYNEAKSGDGRREKPHRCP--FF-----CALLLPTS 348
           A  HL Y G          MK + M +  K G GR EKP  CP   F     C   LP  
Sbjct: 12  AMGHLPYEG----------MKGKQMMDMIKDG-GRLEKPLHCPDEIFVVMQDCWRTLPEE 60

Query: 347 RPSFPWLSS 321
           RPSFP L +
Sbjct: 61  RPSFPQLKT 69


>tr|B6XST5|B6XST5_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium catenulatum DSM 16992 GN=BIFCAT_00242
           PE=4 SV=1
          Length = 643

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +2

Query: 263 MRKTSCQSFS*KQYMH-----GFSLRRAMESLGGRLVAEGHKRRGICVAFPSFHLLI 418
           M++   Q+++ ++YM      GFSL+     LGG LV  GH   G  VAF S+  +I
Sbjct: 239 MQRNMAQAYNSRKYMPWLDGLGFSLQLITLGLGGFLVITGHMTLGNLVAFNSYLWMI 295