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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916496
Clone id YMU001_000088_C12
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTAGACGAAGTGACAAGTTTGGCACCCAAGTGTGCTCCCTTTTCCGGGTATATGCCCAG
ATCACTCTCTCCGTTCTCTCATTTGTGTCGACCTCTTCTCCTGTGTCATCATCGTATTTT
TCCACCATCACCCTGATATTCGTCAAGAAAATGGCACTGGCAAGTCCTTTCTTCCCTTGT
CTTTTTAAGAATTCAATGGTATTCTTTTCCAAGTGCTCATCCTTGTCAACGGTGAAGCCT
TTCACCTCCGTCAATGCAAGGATGCTGTTGATACGATCCCCCTCATGTTTGCTATCTCTG
TTGTTGCAAATCTCCAGAGTGCTCTCCAAGTCTGGCATTTGAATAGCTCTGGTTACCACA
TCCTCATATAAGTTATGCACACCAGCACGCCAAACCTTGAGTAAACCAGCATCTTTTAAC
AATCCACCTAAAGGGGACGTCTCTAGCCATTCGCTGGCCCGCTCAGGTAGATCAGGTGGG
GGTGAAGGGCCAAGCAGGACTGAAAGAAA
■■Homology search results ■■ -
sp_hit_id Q8R7T1
Definition sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2 OS=Thermoanaerobacter tengcongensis
Align length 107
Score (bit) 38.1
E-value 0.024
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916496|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C12.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2 OS=Thermoanaerob...    38   0.024
sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Asperg...    32   2.3  
sp|Q96ZL3|CBID_SULTO Putative cobalt-precorrin-6A synthase [deac...    32   2.3  
sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditi...    30   5.0  
sp|Q4R8G4|CE037_MACFA Uncharacterized protein C5orf37 homolog OS...    30   5.0  
sp|Q97C22|PGP_THEVO Phosphoglycolate phosphatase OS=Thermoplasma...    30   6.6  
sp|Q4V891|CE037_RAT Uncharacterized protein C5orf37 homolog OS=R...    30   6.6  
sp|Q8NA72|CE037_HUMAN Uncharacterized protein C5orf37 OS=Homo sa...    30   6.6  

>sp|Q8R7T1|SYE2_THETN Glutamyl-tRNA synthetase 2
           OS=Thermoanaerobacter tengcongensis GN=gltX2 PE=3 SV=1
          Length = 485

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
 Frame = -1

Query: 392 WRAGVHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRI------NSILALTEVKGFT 231
           W   V +LY+D ++   Q+ D+  T  +    +  + G+ I      NSI  L   KG+ 
Sbjct: 359 WLKDVISLYKDGLSYVAQIVDMAKTFFV---EEVDYTGEMIEFLKSPNSIKVLEAFKGYL 415

Query: 230 VDKDEHLEKNTIEFLKRQGKK-GLASAIFLTNIRVMVEKYDDDTGEE 93
            DK E  E +  E++K+  K+ G+    F   IR+ V      TGEE
Sbjct: 416 KDKSEITEDDVREWMKKAQKELGVKGKEFFMPIRIAV------TGEE 456


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10
           OS=Aspergillus oryzae GN=dbp10 PE=3 SV=1
          Length = 929

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = -1

Query: 326 ESTLEICNNRDSKHEGDR-INSILALTEVKGFTVDKDEHLEKNTIEFLK--RQGKKGLAS 156
           E+  E+ N R+ KHEGD  I++I  +     +   K E  EK + +F++    G KG A+
Sbjct: 608 ETIFEVHNRRNGKHEGDEAIDTIKRIRTTVDYKKKKREMAEKQS-DFVEDASSGNKGEAN 666

Query: 155 AIFLTNIRVMVEKYDDDTGEEVDTN 81
               T      ++ ++D GE V  N
Sbjct: 667 ETEETG--AQPDEDEEDIGEGVPDN 689


>sp|Q96ZL3|CBID_SULTO Putative cobalt-precorrin-6A synthase
           [deacetylating] OS=Sulfolobus tokodaii GN=cbiD PE=3 SV=1
          Length = 354

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = -1

Query: 380 VHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRIN--SILALTEVKGFTVDKDEHLE 207
           ++ +  D V   I++PD E   E+  N+D       IN  SIL  T ++ + +  DE+LE
Sbjct: 132 INEVTTDGVKVRIEVPDGEKIAELTMNKDV----GVINGISILGTTGIE-YPISDDEYLE 186

Query: 206 --KNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDD 105
             K+ I  +K  GKK L  A   T+     ++Y D+
Sbjct: 187 HIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDN 222


>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis
            elegans GN=lam-2 PE=1 SV=2
          Length = 1535

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
 Frame = -1

Query: 371  LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEHLE----- 207
            + + V T    + D E+ L++     +K E  R +++     V+G     D+ ++     
Sbjct: 1355 IVDSVSTADKTLKDAEAALQVLEEFGAKIEKSRNDAVAEFAGVEGINQRLDDIIDAQDKR 1414

Query: 206  KNTIEFLKRQGKKGLASA-IFLTNIRVMVEKYDDDTGEEVDTNERTERV 63
            +N++   K+       SA + L     + ++Y D    +VDT + TE V
Sbjct: 1415 RNSLPIDKQFVIDYRKSADVLLNETHALADRYKDIIHSDVDTRDSTEAV 1463


>sp|Q4R8G4|CE037_MACFA Uncharacterized protein C5orf37 homolog
           OS=Macaca fascicularis GN=QtsA-12524 PE=2 SV=1
          Length = 547

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = -1

Query: 392 WRAGVHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEH 213
           WR+ V   ++DVV RA Q    E  ++I N+ ++K     +  +    E     + + +H
Sbjct: 260 WRSVVQKQWKDVVERACQARAEEVCVQISNDYEAK-----VAMLSGALENAKAEIQRMQH 314

Query: 212 LEKNTIEFLKRQGKKGLASAIFLTNIRVM-VEKYDDDTGEEVDTNERTE 69
            +++  + +K+   +G+ +     N+  M + +  +DTG +   N++ E
Sbjct: 315 EKEHFEDSMKKAFMRGVCA----LNLEAMTIFQNRNDTGVDSTNNKKEE 359


>sp|Q97C22|PGP_THEVO Phosphoglycolate phosphatase OS=Thermoplasma
           volcanium GN=TV0283 PE=3 SV=1
          Length = 224

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 260 LALTEVKGFTVDKDEHLEKNTIEFLKRQGKKGLASAIFLTNI 135
           L   +V G   DKD  +    IEF+++  KKG+  ++   N+
Sbjct: 4   LVAIDVDGTLTDKDRLISTRAIEFIRKAEKKGIIVSLLSGNV 45


>sp|Q4V891|CE037_RAT Uncharacterized protein C5orf37 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 558

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = -1

Query: 392 WRAGVHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEH 213
           WR+ V   ++DVV RA Q    E  ++I N+ ++K     +    A  E++    +KD H
Sbjct: 271 WRSVVQRQWKDVVERACQARAEEVCVQISNDYEAKLAMLSLALENAKAEIQRMHQEKD-H 329

Query: 212 LEKNTIEFLKRQGKKGLASAIFLTNIRVM-VEKYDDDTGEEVDTNERTE 69
            E +         KK     +   N+  M + +  +D G +   N++ E
Sbjct: 330 FEDSM--------KKAFMRGVCALNLEAMTIFQNKNDAGIDFTNNKKEE 370


>sp|Q8NA72|CE037_HUMAN Uncharacterized protein C5orf37 OS=Homo
           sapiens GN=C5orf37 PE=1 SV=2
          Length = 575

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
 Frame = -1

Query: 395 VWRAGVHNLYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDE 216
           VWR+ V   ++DVV RA Q    E  ++I N+ ++K     +  +    E     + + +
Sbjct: 287 VWRSVVQKQWKDVVERACQARAEEVCIQISNDYEAK-----VAMLSGALENAKAEIQRMQ 341

Query: 215 HLEKNTIEFLKRQGKKGLASAIFLTNIRVM-VEKYDDDTGEEVDTNERTE 69
           H +++  + +K+   +G+ +     N+  M + +  +D G +   N++ E
Sbjct: 342 HEKEHFEDSMKKAFMRGVCA----LNLEAMTIFQNRNDAGIDSTNNKKEE 387
tr_hit_id A8B349
Definition tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giardia lamblia ATCC 50803
Align length 97
Score (bit) 40.0
E-value 0.065
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916496|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_C12.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giard...    40   0.065
tr|A9TPT2|A9TPT2_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.94 
tr|Q6FVK1|Q6FVK1_CANGA Strain CBS138 chromosome A complete seque...    36   0.94 
tr|A9EYQ5|A9EYQ5_SORC5 Protein kinase OS=Sorangium cellulosum (s...    36   1.2  
tr|A7VWW1|A7VWW1_9CLOT Putative uncharacterized protein OS=Clost...    35   2.1  
tr|Q2G393|Q2G393_NOVAD Putative uncharacterized protein OS=Novos...    34   3.6  
tr|A6SM80|A6SM80_BOTFB Putative uncharacterized protein OS=Botry...    34   4.7  
tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum ...    33   6.1  
tr|Q23WM4|Q23WM4_TETTH Cyclic nucleotide-binding domain containi...    33   6.1  
tr|A5UX83|A5UX83_ROSS1 Bacterial peptide chain release factor 1 ...    33   8.0  

>tr|A8B349|A8B349_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_6542 PE=4 SV=1
          Length = 938

 Score = 40.0 bits (92), Expect = 0.065
 Identities = 30/97 (30%), Positives = 46/97 (47%)
 Frame = -1

Query: 371 LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEHLEKNTIE 192
           + ED++ +  ++ DL++T+       +K   +  N    LT+ +G    + EHL     E
Sbjct: 451 MQEDLLRQESKVLDLQNTI-------NKLRAEVSNKNALLTQARGIIASQKEHL--GGAE 501

Query: 191 FLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEVDTN 81
             KRQGK G +         V V  YDDDTG + D N
Sbjct: 502 KEKRQGK-GASQKSAERRSMVPVASYDDDTGADADPN 537


>tr|A9TPT2|A9TPT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95558 PE=4 SV=1
          Length = 238

 Score = 36.2 bits (82), Expect = 0.94
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
 Frame = -1

Query: 344 IQMPDLESTLEICNNRDS--KHEGDRINSILALTEVKGFTVDKDEHLEKNTIEFLKRQGK 171
           +Q+ +L +  EI N+  S   H G     +  L + + F  D D   +K+  E+++R  K
Sbjct: 95  VQLFELATVPEIRNHMKSIIGHSGGSWEKLFQLLKNEYFLEDSDRVTKKSFFEWIERH-K 153

Query: 170 KGLASAIFLTNIRVMVEKYDDDTGEEVDTN-ERTERVIWAYTRK 42
           K L +   L    +++E  D++  EE+ TN E+ E VI    ++
Sbjct: 154 KDLLAMKLLKKFEILLE--DEEEVEELTTNWEKVEEVIGVLVKR 195


>tr|Q6FVK1|Q6FVK1_CANGA Strain CBS138 chromosome A complete sequence
            OS=Candida glabrata GN=CAGL0E01265g PE=4 SV=1
          Length = 2095

 Score = 36.2 bits (82), Expect = 0.94
 Identities = 19/94 (20%), Positives = 47/94 (50%)
 Frame = -1

Query: 371  LYEDVVTRAIQMPDLESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEHLEKNTIE 192
            L++  +    ++ ++++ +E       K   ++I+ I+  +E K      DEH+ K  ++
Sbjct: 875  LHDCSIIETKKLEEMQTQIEQPTIEMLKETAEKIDCIVMTSEEK---TKLDEHMAKPPLD 931

Query: 191  FLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEV 90
            +LK + ++     + L   R ++ K  + TG+E+
Sbjct: 932  YLKEKARRQRKELVDLVEFRELIRKTTNPTGDEI 965


>tr|A9EYQ5|A9EYQ5_SORC5 Protein kinase OS=Sorangium cellulosum
           (strain So ce56) GN=sce7396 PE=4 SV=1
          Length = 448

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +3

Query: 126 HHPDIRQENGTGKSFLPLSF*EFNGILFQVLILVNGEAFH--LRQCKDAVDTIPLMFAIS 299
           HHP++ +    G         E +G+L+QV+ L++GE  +  LR+ K A   +PL FA+ 
Sbjct: 70  HHPNVAETIDVG---------EEDGVLYQVMELIDGEPLNLVLRESK-ARGGLPLPFALR 119

Query: 300 VVANLQSALQVWH 338
           +VA     L   H
Sbjct: 120 IVAEAALGLHAAH 132


>tr|A7VWW1|A7VWW1_9CLOT Putative uncharacterized protein
           OS=Clostridium leptum DSM 753 GN=CLOLEP_03084 PE=4 SV=1
          Length = 381

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -1

Query: 326 ESTLEICNNRDSKHEGDRINSILALTEVKGFTVDKDEHLEKNTIEFLKRQGKKGLASAIF 147
           ES LE    +D    GD I  ++  TE+KGF+VD++E  +     F K+ G K       
Sbjct: 82  ESALENVRTKDMGEVGDMITGLM--TELKGFSVDEEE--KGGFFGFFKKTGNKIATMKAK 137

Query: 146 LTNIRVMVEKYDD 108
              + V V+K  +
Sbjct: 138 YDKVEVNVDKISE 150


>tr|Q2G393|Q2G393_NOVAD Putative uncharacterized protein
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=Saro_3245 PE=4 SV=1
          Length = 81

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 36  LPFPGICPDHSLRSLICVDLFS 101
           +P PGIC  HSLRSL C  +FS
Sbjct: 38  IPIPGICSRHSLRSLACFAVFS 59


>tr|A6SM80|A6SM80_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_13959
           PE=4 SV=1
          Length = 547

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -1

Query: 209 EKNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEVDTNERTERVIWAYTRKREHT 30
           E+N   ++ R G   +   IF  N+   +  + + T EEV  NE    ++  Y  + E+T
Sbjct: 102 EENVTLWITRNGGFQIVDNIFFANLSKHLSDWTNRTDEEVLWNE----LLAYYEDRLENT 157

Query: 29  WVPNLSLRL 3
           ++PNL L L
Sbjct: 158 YIPNLRLSL 166


>tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum
           bicolor PE=4 SV=1
          Length = 1029

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 CCCKSPECSPSLAFE*LWLPHPHISYAHQHAKP 397
           CCC SP  S   A+   WL HPH+   H HA P
Sbjct: 24  CCCPSP--SMGNAYSRCWL-HPHLPLGHGHAPP 53


>tr|Q23WM4|Q23WM4_TETTH Cyclic nucleotide-binding domain containing
           protein OS=Tetrahymena thermophila SB210
           GN=TTHERM_00923210 PE=4 SV=1
          Length = 866

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -1

Query: 389 RAGVHNLYEDVVTRAIQMPDLESTLE--ICNNRDSKHEGDRINSILALTEVKGFTVDKDE 216
           +   +N YED   + I    L+  ++  + NN DS + G   +      E+K +    DE
Sbjct: 349 KVNTYNKYEDTFQKMIVKSPLKQKIKDMLYNNEDSLNNGGIFHRKFNQEELKKYNKKFDE 408

Query: 215 HLEKNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEE 93
            LEK  +E  K+      ++ +F+  ++    ++D   G +
Sbjct: 409 ELEKRRLEEQKKPEFLNSSAKLFIHKLQY---QFDSKLGSD 446


>tr|A5UX83|A5UX83_ROSS1 Bacterial peptide chain release factor 1
           (BRF-1) OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_2868
           PE=4 SV=1
          Length = 364

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -1

Query: 251 TEVKGFTVDKDEHLEKNTIEFLKRQGKKGLASAIFLTNIRVMVEKYDDDTGEEVDTNERT 72
           T++K   + +D +  KN I  L RQG+ G  +A+F  ++  M  +Y +  G +VD    T
Sbjct: 97  TDIKVLLLPRDPNDSKNVIMEL-RQGEGGDEAALFAADLFRMYTRYAEQRGWDVDVISAT 155

Query: 71  E 69
           E
Sbjct: 156 E 156