NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916506
Clone id YMU001_000088_D10
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGACGAGAGTGAGAGAGAAAGAAGCGTAGTCGGTGATTCTCACTTATAACTATAAAAA
GTTTGCACTTACAACTTCAGGAAATCTATAGTCCAGTCAATTCCTTATAAATTTACTCAT
AAATGCAAAAGATTTTCATCTTTCACTAGTTTTATCTTGTATTTGAAATCTCGTGTGTGT
TGCATTGCTTGAAAGACTTTTTTGATTCGTCAAAGAAAAATGCATAGTCAAAATGTAATT
AACGGGCTCAAAAAATATGCATTGCCCACAAGCTTAATTATCCAGACCCTCTTTAGGTAC
TATAATTGGAATACATATTGTCATGTGGGCCTCATGCGGATGCCTTTCTTAATTCATTAT
TACTTCAGTAAGATATAGACTGGACACGCCATTGTACATAGGAGTAGTGTCTTCTAATGG
GTAGGCAAGGTGTGAAGAGGGTGTAGCAGGCAGCAGCGGGTGCGTCTTCTACATAGGGTT
TGTCCCCTGGCAGCATGGTGAGCTCGAGCACTAAGGGTGTGTGGAAGTGAAAGTGGCACC
TCGTGTGGGTGTGCAACTG
■■Homology search results ■■ -
sp_hit_id Q65EN1
Definition sp|Q65EN1|GPMI_BACLD 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
Align length 28
Score (bit) 30.8
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916506|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_D10.
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q65EN1|GPMI_BACLD 2,3-bisphosphoglycerate-independent phospho...    31   4.7  
sp|A0ALE0|GPMI_LISW6 2,3-bisphosphoglycerate-independent phospho...    30   6.2  
sp|Q8Y4I4|GPMI_LISMO 2,3-bisphosphoglycerate-independent phospho...    30   6.2  
sp|Q71WX0|GPMI_LISMF 2,3-bisphosphoglycerate-independent phospho...    30   6.2  
sp|Q928I2|GPMI_LISIN 2,3-bisphosphoglycerate-independent phospho...    30   6.2  

>sp|Q65EN1|GPMI_BACLD 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Bacillus licheniformis
           (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1
          Length = 511

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 366 EVIMN*ERHPHEAHMTICIPIIVPKEGL 283
           +V++  E  PH AH T  +P+IV KEG+
Sbjct: 449 DVLITEEGKPHTAHTTNPVPVIVTKEGV 476


>sp|A0ALE0|GPMI_LISW6 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Listeria welshimeri serovar
           6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI
           PE=3 SV=1
          Length = 510

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 369 TEVIMN*ERHPHEAHMTICIPIIVPKEGL 283
           +E +   E  PH AH T+ +P+IV K+G+
Sbjct: 447 SETMSTPEGKPHTAHTTVPVPVIVTKKGV 475


>sp|Q8Y4I4|GPMI_LISMO 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Listeria monocytogenes
           GN=gpmI PE=3 SV=1
          Length = 510

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 369 TEVIMN*ERHPHEAHMTICIPIIVPKEGL 283
           +E +   E  PH AH T+ +P+IV K+G+
Sbjct: 447 SETMSTPEGKPHTAHTTVPVPVIVTKKGV 475


>sp|Q71WX0|GPMI_LISMF 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Listeria monocytogenes
           serotype 4b (strain F2365) GN=gpmI PE=3 SV=1
          Length = 510

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 369 TEVIMN*ERHPHEAHMTICIPIIVPKEGL 283
           +E +   E  PH AH T+ +P+IV K+G+
Sbjct: 447 SETMSTPEGKPHTAHTTVPVPVIVTKKGV 475


>sp|Q928I2|GPMI_LISIN 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3
           SV=1
          Length = 510

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 369 TEVIMN*ERHPHEAHMTICIPIIVPKEGL 283
           +E +   E  PH AH T+ +P+IV K+G+
Sbjct: 447 SETMSTPEGKPHTAHTTVPVPVIVTKKGV 475
tr_hit_id A7SIM5
Definition tr|A7SIM5|A7SIM5_NEMVE Predicted protein OS=Nematostella vectensis
Align length 94
Score (bit) 39.7
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916506|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_D10.
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SIM5|A7SIM5_NEMVE Predicted protein OS=Nematostella vectens...    40   0.11 

>tr|A7SIM5|A7SIM5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g212853 PE=4 SV=1
          Length = 366

 Score = 39.7 bits (91), Expect = 0.11
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
 Frame = +1

Query: 100 IPYKFTHKCKRFSSFTSFILYLKSRVCCIA*KTFLIRQRKMHSQNV-INGLKKYALPTSL 276
           IP +F    K FS+  S+  + K+RV      T +IR   +    V +NGL  Y +P  L
Sbjct: 236 IPKRFA---KMFSTLCSY--FYKNRVFLEMAVTSMIRMLDLSKNTVNLNGLYLYGVPDFL 290

Query: 277 IIQTLFRYYNWN-TYCHVGLMRMPFLIHYYFSKI 375
              T ++YYN N T+ H      PF +HY  S++
Sbjct: 291 KKGTFWKYYNTNITFVH------PFKLHYSNSRV 318