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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916511
Clone id YMU001_000088_E04
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTCATGTTGAGCTAGCTGAATATGCTTTTGAACAAATCATGAAATTTCAGCCTCAGTG
GGCTGCACCGTATGTGCTAATGTCCAACATGTATGCAGATAAACTGCAGAATTTTGCAGA
ACTTGCAGAGCTACATATAGAGGATGTGTTAAGAATACAACGATAGTGTGTCTGTACCCC
CATGTCCCGGGGGTTGTAATATATAATCTTTTACATGGGAGGCACATTATGCCAGGGCGG
TGCCATCAATGCACCAAACCCACGTATTATTCTATATGCCTGTTACCACCATATATGCTG
GTAGCCGCATTAGAAGTAACAAGTGCTGTTTTTAGGTCTATTTCTCAAGCTCCGAACTAT
CCTGAGTTCAGCTAAATACAGGGACCTTTGTTGATTTTGTAAAGAGTCTTCTTAATGTTT
TTGGTGACATTAAAGATGGAGAAACTTTGTCATGCATGAAATCTTTCAAGATTTCCTCAT
GTAACACAATGATAAGTCCCTATGATAACCAA
■■Homology search results ■■ -
sp_hit_id P0C8Q2
Definition sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana
Align length 31
Score (bit) 37.4
E-value 0.041
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916511|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E04.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protei...    37   0.041
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi...    37   0.054
sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protei...    37   0.070
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei...    36   0.12 
sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protei...    35   0.16 
sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protei...    35   0.20 
sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei...    35   0.20 
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei...    35   0.20 
sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protei...    35   0.20 
sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protei...    34   0.35 
sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protei...    34   0.35 
sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protei...    33   0.59 
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei...    33   0.59 
sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protei...    33   0.59 
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei...    33   0.59 
sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protei...    33   0.59 
sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protei...    33   0.77 
sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protei...    33   0.77 
sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containi...    33   1.0  
sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protei...    33   1.0  
sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containi...    33   1.0  
sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protei...    33   1.0  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    32   1.3  
sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protei...    32   1.7  
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei...    32   1.7  
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei...    32   1.7  
sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protei...    32   1.7  
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    32   2.2  
sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protei...    32   2.2  
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    31   2.9  

>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E1 PE=2 SV=1
          Length = 654

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYA 97
           +V++AE A E +   +PQ AAPYV M+N+YA
Sbjct: 542 NVKIAEQAAESLFNLEPQMAAPYVEMANIYA 572


>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing
           protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52
           PE=3 SV=1
          Length = 623

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           +V++AE AF ++++F+P     YVLMSN+Y+D
Sbjct: 441 NVDMAELAFAKVIEFEPNNIGYYVLMSNIYSD 472


>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein
           At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
          Length = 721

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           ++ LAE A  ++M  QP  A PYV+++NMYAD
Sbjct: 530 NMALAERAANELMVMQPLAATPYVMLANMYAD 561


>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein
           At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1
          Length = 697

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           ++ L +Y  E++++ +P  + PYVL+SNMYA+
Sbjct: 576 NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAE 607


>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial OS=Arabidopsis thaliana
           GN=DYW10 PE=2 SV=2
          Length = 661

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYADK 103
           +VELAE+A E++++   Q AA YV ++N+YA K
Sbjct: 468 NVELAEFAAEKLLQLNSQNAAGYVQLANIYASK 500


>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein
           At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
          Length = 596

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/41 (36%), Positives = 28/41 (68%)
 Frame = +2

Query: 11  ELAEYAFEQIMKFQPQWAAPYVLMSNMYADKLQNFAELAEL 133
           EL +YA  +++K QP  +  Y L++N+Y++  QN+ E+A +
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSES-QNWDEVARV 531


>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein
           At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
          Length = 595

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 11  ELAEYAFEQIMKFQPQWAAPYVLMSNMYADK 103
           +LAE+A  QI++ +P  +  YVL+SNMYA +
Sbjct: 409 DLAEFARIQILQLEPNHSGDYVLLSNMYASE 439


>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein
           At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
          Length = 694

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYA 97
           HVEL EYA +Q+    P     YV +SN+YA
Sbjct: 506 HVELGEYAAQQLFSIDPSNTGHYVQLSNLYA 536


>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein
           At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
          Length = 597

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +2

Query: 11  ELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           EL + A ++++K  P+ +APY+L+S++YAD
Sbjct: 498 ELGKKAADELIKLDPESSAPYILLSSIYAD 527


>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E10 PE=2 SV=1
          Length = 656

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           +V LA  A E + + +P+ + PYVL+ NMYAD
Sbjct: 593 NVGLAHVAAEAMSRLEPESSTPYVLLYNMYAD 624
tr_hit_id A7P8H1
Definition tr|A7P8H1|A7P8H1_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 32
Score (bit) 42.7
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916511|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E04.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P8H1|A7P8H1_VITVI Chromosome chr3 scaffold_8, whole genome ...    43   0.010
tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, wh...    38   0.33 
tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genom...    38   0.33 
tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis...    38   0.33 
tr|A7Q9R6|A7Q9R6_VITVI Chromosome chr5 scaffold_67, whole genome...    37   0.43 
tr|A5BPX5|A5BPX5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.43 
tr|Q6L4I3|Q6L4I3_ORYSJ Os05g0212100 protein OS=Oryza sativa subs...    37   0.56 
tr|A7NY46|A7NY46_VITVI Chromosome chr6 scaffold_3, whole genome ...    37   0.56 
tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome...    37   0.74 
tr|A7PP85|A7PP85_VITVI Chromosome chr8 scaffold_23, whole genome...    37   0.74 
tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome ...    37   0.74 
tr|A5BVN8|A5BVN8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.74 
tr|Q2HU53|Q2HU53_MEDTR Tetratricopeptide-like helical OS=Medicag...    36   0.96 
tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea...    36   0.96 
tr|A7R0D7|A7R0D7_VITVI Chromosome chr6 scaffold_305, whole genom...    36   0.96 
tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing...    36   1.3  
tr|A7QUT6|A7QUT6_VITVI Chromosome chr1 scaffold_180, whole genom...    36   1.3  
tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|B3U1P4|B3U1P4_9MARC Pentatricopeptide repeat protein (Fragmen...    35   1.6  
tr|A7QUH8|A7QUH8_VITVI Chromosome undetermined scaffold_178, who...    35   1.6  
tr|A7PW61|A7PW61_VITVI Chromosome chr8 scaffold_34, whole genome...    35   1.6  
tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome...    35   1.6  
tr|A7P7A8|A7P7A8_VITVI Chromosome chr9 scaffold_7, whole genome ...    35   1.6  
tr|A7NWZ6|A7NWZ6_VITVI Chromosome chr5 scaffold_2, whole genome ...    35   1.6  
tr|A5AGR4|A5AGR4_VITVI Putative uncharacterized protein OS=Vitis...    35   1.6  
tr|A2Y1K2|A2Y1K2_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.6  
tr|O49549|O49549_ARATH Putative uncharacterized protein F7J7.10 ...    35   2.1  
tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragmen...    35   2.1  
tr|A9U4W7|A9U4W7_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.1  

>tr|A7P8H1|A7P8H1_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036178001
           PE=4 SV=1
          Length = 681

 Score = 42.7 bits (99), Expect = 0.010
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           +VELA  A E +MK +P+ +APYVL+ NMYAD
Sbjct: 616 NVELARVAAEALMKLEPESSAPYVLLHNMYAD 647


>tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008013001 PE=4 SV=1
          Length = 704

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYA 97
           ++ELA  A  Q+++ +P  AAPYV++SNMYA
Sbjct: 528 NIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558


>tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022551001
           PE=4 SV=1
          Length = 673

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 17/43 (39%), Positives = 32/43 (74%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYADKLQNFAELAEL 133
           ++ LAE A +++++ +P+ A PY+L+SN+YA K   + ++AEL
Sbjct: 484 NMNLAEVAAKKLLQLEPKNAGPYILLSNIYASK-GRWGDVAEL 525


>tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037837 PE=4 SV=1
          Length = 719

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYA 97
           ++ELA  A  Q+++ +P  AAPYV++SNMYA
Sbjct: 528 NIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558


>tr|A7Q9R6|A7Q9R6_VITVI Chromosome chr5 scaffold_67, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033590001
           PE=4 SV=1
          Length = 457

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           HV+LAE +F+Q+ K +P     YVL+SN+YA+
Sbjct: 392 HVDLAEESFQQLGKMEPLRDGDYVLLSNIYAE 423


>tr|A5BPX5|A5BPX5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000846 PE=4 SV=1
          Length = 633

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           HV+LAE +F+Q+ K +P     YVL+SN+YA+
Sbjct: 468 HVDLAEESFQQLGKMEPLRDGDYVLLSNIYAE 499


>tr|Q6L4I3|Q6L4I3_ORYSJ Os05g0212100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0074P11.10 PE=2 SV=1
          Length = 822

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           ++E+ E A + +++ +P+  APYVL+SN+YAD
Sbjct: 634 NIEVGEIAAKNVIELEPRDPAPYVLLSNLYAD 665


>tr|A7NY46|A7NY46_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023981001
           PE=4 SV=1
          Length = 517

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query: 2   CH---VELAEYAFEQIMKFQPQWAAPYVLMSNMY--ADKLQNFAELAELHIEDVLRIQR* 166
           CH   VELA    +++++ QPQ A  Y+ +SN Y     L+  A +  L +E  +R ++ 
Sbjct: 325 CHHKNVELARTVGQKLLQLQPQEAGAYISLSNFYGLVGDLEGVANVRRLMLERGIRKEKA 384

Query: 167 CVCTPMSR 190
           C    +SR
Sbjct: 385 CTWIEISR 392


>tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021596001
           PE=4 SV=1
          Length = 629

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = +2

Query: 5   HVELAEYAFEQIMKFQPQWAAPYVLMSNMYAD 100
           +VELAE AFE++++F+P     YVL+SN++++
Sbjct: 444 NVELAELAFEKVIEFEPTNIGYYVLLSNIFSE 475


>tr|A7PP85|A7PP85_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021552001
           PE=4 SV=1
          Length = 561

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   CHVELAEYAFEQIMKFQPQWAAPYVLMSNMYA 97
           C +EL E   +Q+ + +PQ A  YVL+SN+YA
Sbjct: 501 CDIELGEVVADQLFELEPQNAGNYVLLSNIYA 532