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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916512
Clone id YMU001_000088_E05
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACCATTGCACAACTGATGCAATACTCCCCAACATTAGAGAACCATTGAACAACACCAAT
CGGGCTATGGGGAGCCAAGCCCCTACAAAATGAGGCCCTCGAAGCCACATGCGTCGCCAC
CCCTACCATTGACAACCTTGCCTTCGAGAATTGACGAGATAAACTAGCCCGCCATTGGAC
CTCCAAACATAGGAGAGGGAAGCGGACACCCTCTTTACCAAAAATAAGGGCAAATAGCAA
GGACACAGACCACCTTAGTGCTCCACAAAGCCAACACCCTAGCCACAATATCGCCTTGCC
GTAGACCACCATCCTGGGTCTCCCCACCCCATGTGCCTCATAAGCGGCAACAGATGCGAC
TTAGGCACTCTGACCCGAACCCTAGATCTTTATACACGCTCTCTGTAGATTAATAATAAG
TAGCACTTTTAAGATTTTTTGCCAGCCTGGACACTAACCGACCAACTTGCTGTGGGTTTT
CTTGGCACTATACATTT
■■Homology search results ■■ -
sp_hit_id A1RTJ4
Definition sp|A1RTJ4|Y1105_PYRIL UPF0103 protein Pisl_1105 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
Align length 44
Score (bit) 30.8
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916512|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E05.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1RTJ4|Y1105_PYRIL UPF0103 protein Pisl_1105 OS=Pyrobaculum i...    31   3.6  
sp|Q5EAK8|DRAM_XENTR Damage-regulated autophagy modulator OS=Xen...    30   8.0  

>sp|A1RTJ4|Y1105_PYRIL UPF0103 protein Pisl_1105 OS=Pyrobaculum
           islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1105
           PE=3 SV=1
          Length = 281

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 113 VATPTIDNLAFEN*RDKLARH--WTSKHRRGKRTPSLPKIRANS 238
           V  P +    +E+ R+KL +   W  KH  G + P +PK+ A +
Sbjct: 3   VRKPAVAGYFYESDREKLLQQLEWAIKHELGPKAPQIPKLGAET 46


>sp|Q5EAK8|DRAM_XENTR Damage-regulated autophagy modulator
           OS=Xenopus tropicalis GN=dram PE=2 SV=1
          Length = 239

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 316 GSPHPMCLISGNRCDLGTLTRTLDLYTRSL*INNK*HF*DFLPAWTLTDQLAVGFLGTI 492
           G+  P   + G    L  +     +YTR   +  + H  DFLP +     LA+G LG I
Sbjct: 48  GTSPPESGVFGFMISLSAMLGAATMYTRYKILEKQNHSTDFLPYYFNKTSLAIGLLGCI 106
tr_hit_id Q9XNJ9
Definition tr|Q9XNJ9|Q9XNJ9_9BIVA NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bathymodiolus puteoserpentis
Align length 48
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916512|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E05.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XNJ9|Q9XNJ9_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    35   2.6  
tr|Q7YB68|Q7YB68_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    33   5.7  
tr|Q59JA4|Q59JA4_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    33   7.5  
tr|A7J1Z9|A7J1Z9_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    33   7.5  
tr|Q7YB70|Q7YB70_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    33   9.8  
tr|Q7YB69|Q7YB69_9BIVA NADH-ubiquinone oxidoreductase chain 4 (F...    33   9.8  
tr|B2VYF4|B2VYF4_PYRTR C2H2 type zinc finger domain containing p...    33   9.8  

>tr|Q9XNJ9|Q9XNJ9_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Bathymodiolus puteoserpentis GN=ND4 PE=3
           SV=1
          Length = 169

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -3

Query: 315 RMVVYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           R   +   I+ +G  L GA   SV+ LF ++F  EGV FP L L V W
Sbjct: 71  RFSAFNSLIVCIGALLVGAFSVSVTFLFFVLF--EGVLFPTLLLIVGW 116


>tr|Q7YB68|Q7YB68_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Bathymodiolus brooksi GN=ND4 PE=3 SV=1
          Length = 169

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -3

Query: 315 RMVVYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           R   +   I+ +G  L GA   S S LF + F  EGV FP L L V W
Sbjct: 71  RFSAFNSLIICIGVLLVGAFSVSASFLFFVFF--EGVLFPTLLLIVGW 116


>tr|Q59JA4|Q59JA4_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Bathymodiolus septemdierum GN=ND4 PE=3
           SV=1
          Length = 141

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 VGRPRMVVYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           V  PR   +   I+ +   L GA   S +  F ++F  EGV FP L L V W
Sbjct: 67  VAAPRFSAFNSLIVCISVLLVGAFSASATFFFFILF--EGVLFPTLLLIVGW 116


>tr|A7J1Z9|A7J1Z9_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Adipicola longissima GN=ND4 PE=3 SV=1
          Length = 152

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 306 VYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           V+   I+ +G  L GA   S + LF ++F  EGV FP L L V W
Sbjct: 74  VFNGLIICIGVLLVGAFSVSATFLFFILF--EGVLFPTLLLIVGW 116


>tr|Q7YB70|Q7YB70_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Bathymodiolus sp. cf. heckerae GN=ND4 PE=3
           SV=1
          Length = 169

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 315 RMVVYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           R   +   I+ +G  L GA   S + LF ++F  EGV FP L L V W
Sbjct: 71  RFSAFNSLIVCIGVLLVGAFSVSATFLFFVLF--EGVLFPTLLLIVGW 116


>tr|Q7YB69|Q7YB69_9BIVA NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Bathymodiolus heckerae GN=ND4 PE=3 SV=1
          Length = 169

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 315 RMVVYGKAILWLGCWLCGALRWSVSLLFALIFGKEGVRFPLLCLEVQW 172
           R   +   I+ +G  L GA   S + LF ++F  EGV FP L L V W
Sbjct: 71  RFSAFNSLIVCIGVLLVGAFSVSATFLFFVLF--EGVLFPTLLLIVGW 116


>tr|B2VYF4|B2VYF4_PYRTR C2H2 type zinc finger domain containing
           protein OS=Pyrenophora tritici-repentis (strain
           Pt-1C-BFP) GN=PTRG_02444 PE=4 SV=1
          Length = 700

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 155 RDKLARHWTSKHRRGKRTPSLPKIRANSKDTDHLSAPQSQHPSH 286
           RD L RHW   H  G     + +  ++++    L APQ Q PSH
Sbjct: 25  RDLLTRHWRITHHAGNA--GVTESTSSTETATTLDAPQQQDPSH 66