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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916515
Clone id YMU001_000088_E08
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCGCAGGAATTTTTTTTTTCCTGAAACTCGCTAAAGGTTCCAACCTCAACC
TTTTAAATAAAGTTATCATTGCCTTGAGTTAGCAATATTTGGTAAAACTTTATTTGATAA
CAAATACACATCTACAATTAAACATGCTAGAAATCTATCAAAATTGTGTACCTTGGCCAT
CAAGGATACGTACTTTTAGCAAGCTCCTTATTTTTCTCAAGTGGAAGGGCTTACCTCCTC
TCTAGACTCTCCTCTTGGGAGTTACCTATAACCTTCTCTGATTATCTGCAGTCTGTATAT
ATGGCTACTAATTATCTCTTCAGATCGTTAGACTTGGGTAGCATCAAAAACTTTGATCTG
ATTATTCAAAAGCATGACTGCATAAAGTCATCCAGCTTGTGCCACTGCCTCAGTAGGTTG
CATTGACTCCTCCCTTTCCGTCGTTTCTCCAACCTCCATCCGCAAATAGCATCCAATCTC
TACAGCAACGCCCGCTTGCTT
■■Homology search results ■■ -
sp_hit_id Q2RU08
Definition sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Align length 35
Score (bit) 31.6
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916515|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E08.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubr...    32   1.9  
sp|Q3M785|MTNA_ANAVT Methylthioribose-1-phosphate isomerase OS=A...    30   4.2  
sp|Q2G8K9|EFTS_NOVAD Elongation factor Ts OS=Novosphingobium aro...    30   4.2  
sp|Q3AQC6|SYFB_CHLCH Phenylalanyl-tRNA synthetase beta chain OS=...    30   5.4  
sp|Q1GRQ1|EFTS_SPHAL Elongation factor Ts OS=Sphingopyxis alaske...    30   5.4  
sp|Q8YR82|MTNA_ANASP Methylthioribose-1-phosphate isomerase OS=A...    29   9.3  

>sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubrum
           (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1
          Length = 309

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 473 KQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 369
           K  G  +E+G ++R ++GE  E+EES    E  AQ
Sbjct: 272 KDLGAPIELGGFVRFQLGEGIEKEESDFAAEVAAQ 306


>sp|Q3M785|MTNA_ANAVT Methylthioribose-1-phosphate isomerase
           OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
           GN=mtnA PE=3 SV=1
          Length = 347

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 464 GVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 369
           GVA   G YL     ET+ER+E +Q  E VAQ
Sbjct: 51  GVAAAYGMYLGAREIETSERQEFLQKLEKVAQ 82


>sp|Q2G8K9|EFTS_NOVAD Elongation factor Ts OS=Novosphingobium
           aromaticivorans (strain DSM 12444) GN=tsf PE=3 SV=1
          Length = 308

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 473 KQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 363
           K+AG  + +  Y+R ++GE  E+EE+    E  A AG
Sbjct: 270 KEAGAKIVLKDYVRFQLGEGIEKEETDFAAEVAAAAG 306


>sp|Q3AQC6|SYFB_CHLCH Phenylalanyl-tRNA synthetase beta chain
           OS=Chlorobium chlorochromatii (strain CaD3) GN=pheT PE=3
           SV=1
          Length = 803

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 153 QGYVLLASSLFFSSGRAYLLSRLSSWELPITFSDYLQS 266
           QG +  A  L  S+  + ++   SSWE+   F+DYL+S
Sbjct: 121 QGMICAADELGLSNDHSGVMELESSWEIGKPFADYLES 158


>sp|Q1GRQ1|EFTS_SPHAL Elongation factor Ts OS=Sphingopyxis
           alaskensis GN=tsf PE=3 SV=1
          Length = 308

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 473 KQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 363
           K  G A+ +  ++R ++GE  E+EES    E  A AG
Sbjct: 271 KDVGAAITLKGFVRFQLGEGIEKEESDFAAEVAAAAG 307


>sp|Q8YR82|MTNA_ANASP Methylthioribose-1-phosphate isomerase
           OS=Anabaena sp. (strain PCC 7120) GN=mtnA PE=3 SV=1
          Length = 347

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 464 GVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 369
           GVA   G YL     ET ER+E +Q  E VAQ
Sbjct: 51  GVAAAYGMYLGAREIETGERQEFLQELEKVAQ 82
tr_hit_id Q9SWW0
Definition tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersicum
Align length 36
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916515|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_E08.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersi...    35   2.4  
tr|A7Q9U5|A7Q9U5_VITVI Chromosome chr8 scaffold_68, whole genome...    34   3.2  
tr|A5AXR2|A5AXR2_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|B5ITC4|B5ITC4_9EURY Putative uncharacterized protein OS=Therm...    33   9.3  

>tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersicum
           GN=ER49 PE=2 SV=1
          Length = 391

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -1

Query: 473 KQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQA 366
           K  G  V+IG +LRMEVGE  +R E+   +E +A A
Sbjct: 355 KDVGSPVKIGSFLRMEVGEGLQRLEASNESEPLANA 390


>tr|A7Q9U5|A7Q9U5_VITVI Chromosome chr8 scaffold_68, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033626001
           PE=4 SV=1
          Length = 1312

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +3

Query: 129 IKIVYLGHQGYVLLASSLFFSSGRAYLLSRLSSWELPITFSDYLQSVYMATNYLFRSLDL 308
           + ++ LGH   +      FFS     L S L  W LP+TF D    V  + +YL   +D 
Sbjct: 145 VHVLELGHTMVLF-----FFSIVVGLLDSTLDDWGLPVTFLDRASGVARSGDYLNMDIDS 199

Query: 309 GSIKNF 326
              KNF
Sbjct: 200 KGNKNF 205


>tr|A5AXR2|A5AXR2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036441 PE=4 SV=1
          Length = 1237

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +3

Query: 129 IKIVYLGHQGYVLLASSLFFSSGRAYLLSRLSSWELPITFSDYLQSVYMATNYLFRSLDL 308
           + ++ LGH   +      FFS     L S L  W LP+TF D    V  + +YL   +D 
Sbjct: 100 VHVLELGHTMVLF-----FFSIVVGLLDSTLDDWGLPVTFLDRASGVARSGDYLNMDIDS 154

Query: 309 GSIKNF 326
              KNF
Sbjct: 155 KGNKNF 160


>tr|B5ITC4|B5ITC4_9EURY Putative uncharacterized protein
           OS=Thermococcus barophilus MP GN=TERMP_147 PE=4 SV=1
          Length = 493

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = +3

Query: 123 KSIKIVYLGHQGYVLLASSLFFSSGRAYLLSRLSSWEL-PITFSDY---LQSVYMATNYL 290
           +SI  ++ G    +++A  LFFS  + Y+++ LSS  L P  FS Y   +QS Y+ +  L
Sbjct: 47  QSIAFIFFG----IMMAIGLFFSDDKTYIVAMLSSLALIPFIFSLYVTTVQSSYVVSLGL 102

Query: 291 FRSL 302
           F  +
Sbjct: 103 FEPM 106