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NBDC - LSDB Archive
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BP916548
Clone id YMU001_000088_H06
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGTAACTTCTTGTGCTTCTCTATCAAGCTGAAAACTAGCAGCATCTTTCCCTTTGTAATG
CTTCAATGCCCACTGCAACTCTCTGACTGCTCCCTGTAGTATTGACATAGCATCGGCTGT
ATCAGCTCTTTCAATTTCAAGCAACTTGATCAAGTCTTCATTGTCCCTCGTGGGCAAAAG
TTCTCTTTCACCCCAGTCTTCTCCACTCTCAAGTATCGTGCTATGTTCTTCTAGGACTTT
TGGTTCGACTCGCTCGTGTATCCATGCTACCTTCCTCTCAGAGTCTCGTTCTAACCTTGC
CCTTTGAAGTTCCTTTTCCTTTGCGTTTAGCTCTTCTTTGAGACTGTGGATAGCCAGCAT
TGCCTCAGCTATTTGATTATCAAAGCCTGCAATTTTACTAATCAAATCTTGCCATTCTAC
ATCTCTTCTGCCACCAAAACCACTAGTTTGG
■■Homology search results ■■ -
sp_hit_id P55080
Definition sp|P55080|MFAP1_CHICK Microfibrillar-associated protein 1 OS=Gallus gallus
Align length 99
Score (bit) 31.2
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916548|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_H06.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55080|MFAP1_CHICK Microfibrillar-associated protein 1 OS=Gal...    31   2.2  
sp|Q99661|KIF2C_HUMAN Kinesin-like protein KIF2C OS=Homo sapiens...    31   2.8  
sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens ...    30   3.7  
sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 ...    30   6.3  
sp|Q9R1K8|GRP1_RAT RAS guanyl-releasing protein 1 OS=Rattus norv...    30   6.3  
sp|Q9Z1S3|GRP1_MOUSE RAS guanyl-releasing protein 1 OS=Mus muscu...    30   6.3  
sp|O95267|GRP1_HUMAN RAS guanyl-releasing protein 1 OS=Homo sapi...    30   6.3  
sp|Q8RFY7|GSA_FUSNN Glutamate-1-semialdehyde 2,1-aminomutase OS=...    29   8.2  

>sp|P55080|MFAP1_CHICK Microfibrillar-associated protein 1 OS=Gallus
           gallus GN=MFAP1 PE=2 SV=1
          Length = 442

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/99 (25%), Positives = 41/99 (41%)
 Frame = -2

Query: 297 RLERDSERKVAWIHERVEPKVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIERADT 118
           R+  D E ++A   + VEP+V+   S     GE W       + + E+ I   EIER   
Sbjct: 94  RITEDVEERLARHRKIVEPEVVSGESDSEVEGEAWRVEREDTSEEEEEEIDDEEIERWRG 153

Query: 117 ADAMSILQGAVRELQWALKHYKGKDAASFQLDREAQEVT 1
                  +    EL+      +G+     +L+ E +E T
Sbjct: 154 MMRQRAQERKTEELEVMELEDEGRSGEESELESEYEEYT 192


>sp|Q99661|KIF2C_HUMAN Kinesin-like protein KIF2C OS=Homo sapiens
           GN=KIF2C PE=1 SV=2
          Length = 725

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 249 VEPKVLEEHSTILESGEDW---GERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRE 79
           +E K +EE   I++ G DW    E    P  D E  +   E   A  A   S L+  ++ 
Sbjct: 644 LEEKAMEELKEIIQQGPDWLELSEMTEQPDYDLETFVNKAESALAQQAKHFSALRDVIKA 703

Query: 78  LQWALK 61
           L+ A++
Sbjct: 704 LRLAMQ 709


>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens
            GN=AKAP9 PE=1 SV=3
          Length = 3911

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -2

Query: 270  VAWIHERVEPKVLEEHSTILESGEDWGEREL--LPTRDNEDLIKLLEIERADTADAMSIL 97
            VA +   +    LE  +T+    +   E E   L  +D  D + LL        D ++  
Sbjct: 3165 VAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLN-------DTLASE 3217

Query: 96   QGAVRELQWALKHYKGKDAASFQLDREAQE 7
            Q   RELQWAL+  K K   S + D+E  E
Sbjct: 3218 QKKSRELQWALEKEKAKLGRSEERDKEELE 3247


>sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3
           PE=1 SV=1
          Length = 976

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 219 TILESG---EDWGERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRELQWALKHYKG 49
           ++L+ G    D+ + ELL +R+N D   LL   R + AD  +  Q  +  L +A+ HY  
Sbjct: 307 SLLDKGVILHDYADTELLLSRENVDQEALLSYAR-EAADFST--QQQLPSLDFAINHYGQ 363

Query: 48  KDAASF 31
            D A F
Sbjct: 364 PDVAMF 369


>sp|Q9R1K8|GRP1_RAT RAS guanyl-releasing protein 1 OS=Rattus
           norvegicus GN=Rasgrp1 PE=1 SV=1
          Length = 795

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILE 208
           QR +     +RKV+ + + +EP+ L EH T LE
Sbjct: 185 QRIKSNTSKKRKVSLLFDHLEPEELSEHLTYLE 217


>sp|Q9Z1S3|GRP1_MOUSE RAS guanyl-releasing protein 1 OS=Mus musculus
           GN=Rasgrp1 PE=1 SV=1
          Length = 795

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILE 208
           QR +     +RKV+ + + +EP+ L EH T LE
Sbjct: 185 QRIKSNTSKKRKVSLLFDHLEPEELSEHLTYLE 217


>sp|O95267|GRP1_HUMAN RAS guanyl-releasing protein 1 OS=Homo sapiens
           GN=RASGRP1 PE=1 SV=2
          Length = 797

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILE 208
           QR +     +RKV+ + + +EP+ L EH T LE
Sbjct: 185 QRIKSNTSKKRKVSLLFDHLEPEELSEHLTYLE 217


>sp|Q8RFY7|GSA_FUSNN Glutamate-1-semialdehyde 2,1-aminomutase
           OS=Fusobacterium nucleatum subsp. nucleatum GN=hemL PE=3
           SV=1
          Length = 434

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 243 PKVLEEHSTILESGEDWGERELLPTRDNEDLIKLL 139
           PKV+EE   I+E+G  +G    LPT+   DL +L+
Sbjct: 72  PKVIEEVKKIIENGSSYG----LPTKYEVDLAELI 102
tr_hit_id A9RMY8
Definition tr|A9RMY8|A9RMY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 123
Score (bit) 49.7
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916548|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_H06.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMY8|A9RMY8_PHYPA Predicted protein OS=Physcomitrella paten...    50   7e-05
tr|A9RGU3|A9RGU3_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q8P3N3|Q8P3N3_XANCP Cation efflux system protein OS=Xanthomon...    35   2.5  
tr|Q4UP57|Q4UP57_XANC8 Cation efflux system protein OS=Xanthomon...    35   2.5  
tr|B2V941|B2V941_SULSY Efflux transporter, RND family, MFP subun...    35   2.5  
tr|Q1QXH2|Q1QXH2_CHRSD Transcriptional regulator, ArsR family OS...    34   4.2  
tr|Q7PV87|Q7PV87_ANOGA AGAP012090-PA (Fragment) OS=Anopheles gam...    33   5.5  
tr|A5IZ70|A5IZ70_MYCAP Putative uncharacterized protein OS=Mycop...    33   7.1  
tr|A1L275|A1L275_DANRE LOC557688 protein (Fragment) OS=Danio rer...    33   9.3  

>tr|A9RMY8|A9RMY8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_160045 PE=4 SV=1
          Length = 1257

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
 Frame = -2

Query: 411  QDLISKIAGFDNQIAEAMLAIHSXXXXXXXXXXXLQRARLERDSERKVAWIHERVEPKVL 232
            Q  + ++A  D QI EAM AI S           L +A++++++E    W  ER +  ++
Sbjct: 708  QAAVCRVANVDKQIEEAMDAIVSLREELDNKETQLIQAKMDKEAE----W--ERRQAALV 761

Query: 231  EEHSTILESGED-----WGERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRELQWA 67
            +E+  +L   E      W  +E      N+ ++  L  ER +TA    +++GA+REL+W+
Sbjct: 762  QEYKEMLSMREQKWQQGWMRKEQELLAANDKILHQLADERGETA----LVRGALRELEWS 817

Query: 66   LKH 58
            +KH
Sbjct: 818  IKH 820


>tr|A9RGU3|A9RGU3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_65935 PE=4 SV=1
          Length = 1436

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
 Frame = -2

Query: 441  GFGGRRDVEWQDLISKIAGFDNQIAEAMLAIHSXXXXXXXXXXXLQRARLERDSERKVAW 262
            G   + D + Q    ++   D QI EAM  I S           L+ A+  ++ E    W
Sbjct: 945  GIDCQDDFDSQAADFRVVNVDIQIEEAMNEIESLREELDNKETQLKHAKKVKEIE----W 1000

Query: 261  IHERVEPKVLEEHSTILESGED-----WGERELLPTRDNEDLIKLLEIERADTADAMSIL 97
              ER +  ++EE+  +L+  E      W  +E      N+ ++  L  +R +TA    I+
Sbjct: 1001 --ERRQAALIEEYEDMLDMREQELQQVWMRKEQELLSANDKILHQLADQRGETA----IV 1054

Query: 96   QGAVRELQWALKH 58
            QGA+REL+W +KH
Sbjct: 1055 QGALRELEWFIKH 1067


>tr|Q8P3N3|Q8P3N3_XANCP Cation efflux system protein OS=Xanthomonas
           campestris pv. campestris GN=czcC PE=4 SV=1
          Length = 421

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
 Frame = -2

Query: 429 RRDVEWQDLISKIAGFDNQ--IAEAMLAIHSXXXXXXXXXXXLQRARLE-RDSERKVAWI 259
           R D++WQ  + ++ G D    +    LA+ S             RAR E R +E +++ +
Sbjct: 268 RPDLDWQVGVRRLQGSDATALVGGVSLALGSAA-----------RARPEIRAAEAELSLL 316

Query: 258 HERVEPKVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRE 79
               + +VL  ++T+ ++   +   +L  +R  ED++  L   RAD A   +   GA   
Sbjct: 317 DIERQSQVLVLYTTLADAHGRYRAAQLEVSRMREDVLPALA--RADAAAERAYRAGATSY 374

Query: 78  LQWALKHYKGKDAASFQLDREAQEVT 1
           L WA    +  DA   QL   ++  T
Sbjct: 375 LDWAQLQAQHNDARQQQLAAASEAQT 400


>tr|Q4UP57|Q4UP57_XANC8 Cation efflux system protein OS=Xanthomonas
           campestris pv. campestris (strain 8004) GN=XC_4127 PE=4
           SV=1
          Length = 421

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
 Frame = -2

Query: 429 RRDVEWQDLISKIAGFDNQ--IAEAMLAIHSXXXXXXXXXXXLQRARLE-RDSERKVAWI 259
           R D++WQ  + ++ G D    +    LA+ S             RAR E R +E +++ +
Sbjct: 268 RPDLDWQVGVRRLQGSDATALVGGVSLALGSAA-----------RARPEIRAAEAELSLL 316

Query: 258 HERVEPKVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRE 79
               + +VL  ++T+ ++   +   +L  +R  ED++  L   RAD A   +   GA   
Sbjct: 317 DIERQSQVLVLYTTLADAHGRYRAAQLEVSRMREDVLPALA--RADAAAERAYRAGATSY 374

Query: 78  LQWALKHYKGKDAASFQLDREAQEVT 1
           L WA    +  DA   QL   ++  T
Sbjct: 375 LDWAQLQAQHNDARQQQLAAASEAQT 400


>tr|B2V941|B2V941_SULSY Efflux transporter, RND family, MFP subunit
           OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
           GN=SYO3AOP1_0831 PE=4 SV=1
          Length = 372

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 240 KVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIERADTADAMSILQGAVRELQWALK 61
           KV E    + E G       L+P    +++ K LE+ + D   A++  Q +++EL + LK
Sbjct: 133 KVYERRKNLFEKG-------LIPKEQFDEVAKNLEVAKRDYEKAVASYQDSLKELSYQLK 185

Query: 60  HYKGKDA 40
            ++ K A
Sbjct: 186 SFEAKKA 192


>tr|Q1QXH2|Q1QXH2_CHRSD Transcriptional regulator, ArsR family
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=Csal_1483 PE=4 SV=1
          Length = 135

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILESGEDWGERELL 175
           +RA L RD  R+ AWI+ R+EP + E  STILE+  D    E++
Sbjct: 57  RRAGLLRD-RRRGAWIYYRLEPTLPEWVSTILEASRDAAPPEVI 99


>tr|Q7PV87|Q7PV87_ANOGA AGAP012090-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP012090 PE=4 SV=4
          Length = 1642

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIER 127
           ++ RL  DS RK+     + E  +L + +  LES     ER     ++NE +I+LL  E+
Sbjct: 394 EKQRLSPDSTRKL-----QDEINILTKRNCELESQIKSFERVDAKIKENEKMIRLLRQEK 448

Query: 126 ADTA----DAMSILQGAVRELQWALKHYK 52
            D A    DA+  L+   +EL+ AL+  K
Sbjct: 449 EDLAKEHQDALDRLKQQDKELKDALEQRK 477


>tr|A5IZ70|A5IZ70_MYCAP Putative uncharacterized protein
           OS=Mycoplasma agalactiae (strain PG2) GN=MAG6290 PE=4
           SV=1
          Length = 934

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = -2

Query: 276 RKVAWIHERVEPKVLEEH-STILESGEDWGERELLPTRDNEDLIKLLEIERADTADAMSI 100
           R+ A+IH   + K +  + +TI  SGE  GE  ++  R+NE L  LLE++  +T    S+
Sbjct: 439 REYAYIHYNQQAKAISFYCNTIERSGEQNGET-MMVVRNNEMLEGLLELKEENTISKFSV 497

Query: 99  LQGAVRELQWAL 64
            +  V+ L ++L
Sbjct: 498 -KSVVKYLAYSL 508


>tr|A1L275|A1L275_DANRE LOC557688 protein (Fragment) OS=Danio rerio
           GN=LOC557688 PE=2 SV=1
          Length = 931

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/96 (22%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
 Frame = -2

Query: 306 QRARLERDSERKVAWIHERVEPKVLEEHSTILESGEDWGERELLPTRDNEDLIKLLEIER 127
           Q+ ++E + ER    + ++++ +  E   ++L+  E     + L  +DN ++IKL ++  
Sbjct: 211 QQMQME-ELERSAEMMRDQLKRRDREFEESLLQVREQQASGQRLTIKDNVEMIKLQKL-L 268

Query: 126 ADTADAMSILQGAVRELQWALKHYKGK-DAASFQLD 22
           ++ A+ +++L+G   + Q ++K  K   DAA  +++
Sbjct: 269 SEKANTLAVLEGRFLQQQESMKTLKASHDAALLKVE 304