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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916549
Clone id YMU001_000088_H07
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCACTTCACTGTCACAGGCAGACAAAAGTGCTTTGGTTTGGAAGGTGATTGGAGACTGA
CGTGGTGTTTGGATGGGCGGTTTTATGAACAATTTATTGGAGAGGAAATTGTGTTTGAAC
ATGGATATGATGGAAAACATAGTCCATGGCAAGCTGATGCTGGTGGCTATGTTACTGACC
TCCATCTTGACAACTTGGAGGCTTGTTTGTCCGCCCTATGGGTCAGAACAGGCTATTGGT
TCACAGTGGTGGAGGGCTATTAAACCTGCTCATAAA
■■Homology search results ■■ -
sp_hit_id A4RHU9
Definition sp|A4RHU9|DCL2_MAGGR Dicer-like protein 2 OS=Magnaporthe grisea
Align length 64
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916549|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_H07.
         (276 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4RHU9|DCL2_MAGGR Dicer-like protein 2 OS=Magnaporthe grisea ...    33   0.44 
sp|Q8FRI7|SECA1_COREF Protein translocase subunit secA 1 OS=Cory...    30   3.8  
sp|Q081N5|SYD_SHEFN Aspartyl-tRNA synthetase OS=Shewanella frigi...    30   4.9  
sp|Q15RN2|SYD_PSEA6 Aspartyl-tRNA synthetase OS=Pseudoalteromona...    30   4.9  
sp|A7I6H7|SYM_METB6 Methionyl-tRNA synthetase OS=Methanoregula b...    29   6.4  
sp|Q93148|SPT6H_CAEBR Suppressor of Ty 6 homolog OS=Caenorhabdit...    29   8.3  
sp|Q2FU77|SYM_METHJ Methionyl-tRNA synthetase OS=Methanospirillu...    29   8.4  
sp|Q12N06|SYD_SHEDO Aspartyl-tRNA synthetase OS=Shewanella denit...    29   8.4  
sp|Q8NSB6|SECA1_CORGL Protein translocase subunit secA 1 OS=Cory...    29   8.4  
sp|A4QC94|SECA1_CORGB Protein translocase subunit secA 1 OS=Cory...    29   8.4  
sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=...    29   8.4  
sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 O...    29   8.4  

>sp|A4RHU9|DCL2_MAGGR Dicer-like protein 2 OS=Magnaporthe grisea
            GN=DCL2 PE=3 SV=2
          Length = 1485

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 45   GDW-RLTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAGGYVTDLHLDNLEACLSALW 221
            GDW R     + R  E   G     EHG   +  PW   A   ++ +H D LEA + A+W
Sbjct: 1298 GDWVRDQQLAEERHAEMAPGIRDALEHG---QRYPWDLLARLRISKVHSDVLEAVIGAVW 1354

Query: 222  VRTG 233
            V +G
Sbjct: 1355 VDSG 1358


>sp|Q8FRI7|SECA1_COREF Protein translocase subunit secA 1
           OS=Corynebacterium efficiens GN=secA1 PE=3 SV=1
          Length = 845

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 153 ADAGGYVTDLHLDNLEACLSALWVRTGYWFTVVEG 257
           A A GYV D  LD L   L AL+  T  W ++V+G
Sbjct: 686 ATANGYVEDWDLDKLWNALEALYGPTFTWQSLVDG 720


>sp|Q081N5|SYD_SHEFN Aspartyl-tRNA synthetase OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=aspS PE=3 SV=1
          Length = 591

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 39  LEGDWRLTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAGGYVTDLHLDNLEACLSA 215
           LEG+WR  W +D   +E+  G       G+   H P+ A  G    +L  D   A   A
Sbjct: 422 LEGEWRPMWVVDFPMFEKING-------GFHAVHHPFTAPRGISPAELAADPAAAISDA 473


>sp|Q15RN2|SYD_PSEA6 Aspartyl-tRNA synthetase OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=aspS PE=3 SV=1
          Length = 592

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 39  LEGDWRLTWCLDGRFYEQFIGEEIVFEHGY 128
           LEG+W+  W +D   +E+F G+     H +
Sbjct: 420 LEGEWKPLWVIDFPMFEEFDGQFYALHHPF 449


>sp|A7I6H7|SYM_METB6 Methionyl-tRNA synthetase OS=Methanoregula
           boonei (strain 6A8) GN=metG PE=3 SV=1
          Length = 662

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 48  DWRLTWCLDGRFYEQFIGEEIVFEH 122
           DW+  WC D R    FIG +I++ H
Sbjct: 272 DWKRYWCKDNR-VTHFIGGDIIYHH 295


>sp|Q93148|SPT6H_CAEBR Suppressor of Ty 6 homolog OS=Caenorhabditis
            briggsae GN=emb-5 PE=2 SV=2
          Length = 1521

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 276  FMSRFNSPPPL*TNSL-F*PIGRTNKPPS 193
            F   FN PPP   +SL + P GRT  PPS
Sbjct: 1480 FKRHFNEPPPGIRSSLSYRPTGRTGPPPS 1508


>sp|Q2FU77|SYM_METHJ Methionyl-tRNA synthetase OS=Methanospirillum
           hungatei (strain JF-1 / DSM 864) GN=metG PE=3 SV=2
          Length = 664

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 48  DWRLTWCLDGRFYEQFIGEEIVFEH 122
           DW+  WC +      FIG++I + H
Sbjct: 272 DWKTYWCGENTRVTHFIGQDITYHH 296


>sp|Q12N06|SYD_SHEDO Aspartyl-tRNA synthetase OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=aspS PE=3 SV=1
          Length = 593

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 39  LEGDWRLTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAGGYVTDL 182
           LEG WR  W +D   +E+  G       G+   H P+ A  G    +L
Sbjct: 422 LEGQWRPLWVIDFPMFEKING-------GFHAVHHPFTAPRGVTAAEL 462


>sp|Q8NSB6|SECA1_CORGL Protein translocase subunit secA 1
           OS=Corynebacterium glutamicum GN=secA1 PE=3 SV=1
          Length = 845

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 153 ADAGGYVTDLHLDNLEACLSALWVRTGYWFTVVEG 257
           A A GYV D  LD L   L AL+  +  W  +VEG
Sbjct: 686 ATANGYVEDWDLDKLWNALEALYDPSINWTDLVEG 720


>sp|A4QC94|SECA1_CORGB Protein translocase subunit secA 1
           OS=Corynebacterium glutamicum (strain R) GN=secA1 PE=3
           SV=1
          Length = 845

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 153 ADAGGYVTDLHLDNLEACLSALWVRTGYWFTVVEG 257
           A A GYV D  LD L   L AL+  +  W  +VEG
Sbjct: 686 ATANGYVEDWDLDKLWNALEALYDPSINWTDLVEG 720
tr_hit_id A9RIF5
Definition tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 82
Score (bit) 78.6
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916549|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_H07.
         (276 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella paten...    79   2e-13
tr|Q01AJ1|Q01AJ1_OSTTA Chromosome 04 contig 1, DNA sequence OS=O...    47   4e-04
tr|A5ZFB1|A5ZFB1_9BACE Putative uncharacterized protein OS=Bacte...    33   5.5  
tr|A7ICW1|A7ICW1_XANP2 AAA ATPase OS=Xanthobacter autotrophicus ...    33   7.2  
tr|A4RHV3|A4RHV3_MAGGR Putative uncharacterized protein OS=Magna...    33   7.2  
tr|A6LFN3|A6LFN3_PARD8 Aminotransferase OS=Parabacteroides dista...    33   9.4  
tr|A4S647|A4S647_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   9.4  

>tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66553 PE=4 SV=1
          Length = 716

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +3

Query: 6   FTVTGRQKCFGLEGDWRLTWCLD-GRFYEQFIGEEIVFEHGYDGK-HSPWQADAGGYVTD 179
           F ++G Q    +EG W+L W  D GRF+EQF G E+  E G+DG+  + W   A G  + 
Sbjct: 120 FWISGTQTLLAMEGKWQLNWRNDDGRFWEQFDGVEMTLECGFDGEGQNSWAVGAAGIRST 179

Query: 180 LHLDNLEACLSALWVRTGYWFT 245
           L LD+ E CL   W+RTGYW T
Sbjct: 180 LELDDREVCLLGAWIRTGYWVT 201


>tr|Q01AJ1|Q01AJ1_OSTTA Chromosome 04 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot04g04090 PE=4 SV=1
          Length = 561

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 6   FTVTGRQKCFGLEGDWRLTWCL---DGRFYEQFIGEEIVFEHGYDG--KHSPWQADAGGY 170
           +T+ GR +  GL       WCL   D  F E+ +  E+ +  G     + S W+ D  GY
Sbjct: 61  YTLWGRGQHLGLPA----LWCLRTDDEAFVEETMNAELCYVSGRSRGREGSCWEVDFSGY 116

Query: 171 VTDLHLDNLEACLSALWVRTGYWFT 245
              L LD+ EA     W R+G+W T
Sbjct: 117 AQRLELDDAEAATLGAWTRSGFWAT 141


>tr|A5ZFB1|A5ZFB1_9BACE Putative uncharacterized protein
           OS=Bacteroides caccae ATCC 43185 GN=BACCAC_01575 PE=4
           SV=1
          Length = 369

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 79  GFMNNLLERKLC--LNMDMMENIVHGKLMLVAMLLTSILTTWRLVCPPYGSEQAIGSQWW 252
           G+ +  LE+ LC  L ++ +    +G L L+A L  ++  +  ++  PY       S WW
Sbjct: 36  GYYHQELEKALCTYLGIEYISVFTNGTLPLIAAL-QALRISGEVITTPYSFVATTHSIWW 94

Query: 253 RAIKP 267
             IKP
Sbjct: 95  NGIKP 99


>tr|A7ICW1|A7ICW1_XANP2 AAA ATPase OS=Xanthobacter autotrophicus
           (strain ATCC BAA-1158 / Py2) GN=Xaut_0598 PE=4 SV=1
          Length = 809

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 57  LTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAG-GYVTD--LHLDNLE 200
           L  C  G   +Q    +I+ EHG DG  +PW    G G+  D  L LDNLE
Sbjct: 756 LALCAAGSKTDQAALSQILAEHGRDGFFAPWLRHRGLGWAADLILTLDNLE 806


>tr|A4RHV3|A4RHV3_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_07167 PE=4 SV=1
          Length = 819

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 45  GDW-RLTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAGGYVTDLHLDNLEACLSALW 221
           GDW R     + R  E   G     EHG   +  PW   A   ++ +H D LEA + A+W
Sbjct: 632 GDWVRDQQLAEERHAEMAPGIRDALEHG---QRYPWDLLARLRISKVHSDVLEAVIGAVW 688

Query: 222 VRTG 233
           V +G
Sbjct: 689 VDSG 692


>tr|A6LFN3|A6LFN3_PARD8 Aminotransferase OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=BDI_2784 PE=4 SV=1
          Length = 368

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +1

Query: 61  RGVWM--GGFMNNLLERKLC--LNMDMMENIVHGKLMLVAMLLTSILTTWRLVCPPYGSE 228
           R  W+   G+ +  LER LC  L +  +    +G L L+  L  ++  T  ++  PY   
Sbjct: 27  RRKWLTNNGYYHQELERALCEYLKIPYISLFTNGTLPLICAL-QAMRITGEVITTPYSFV 85

Query: 229 QAIGSQWWRAIKP 267
               + WW  IKP
Sbjct: 86  ATTHALWWNGIKP 98


>tr|A4S647|A4S647_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_93571 PE=4 SV=1
          Length = 621

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
 Frame = +3

Query: 9   TVTGRQKCFGLEGDWRLTWCLDGRFYEQFI-------GEEIVFEHGYDGKHSPWQADAGG 167
           T  G     GL+G + LT    G  + + +        + +  E G D   + W AD  G
Sbjct: 35  TTRGTCTAHGLDGAFELTHDARGTTFVERVTLARGDDADALTTESGRDDDGTTWDADWYG 94

Query: 168 YVTDLHLDNLEACLSALWVRTGYW 239
                 LD   A     WVRT  W
Sbjct: 95  DRRATTLDGAHASAMMTWVRTNQW 118