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NBDC - LSDB Archive
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BP916554
Clone id YMU001_000089_A02
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCTCAAATCAGAGTTGTTTTCATCACGTTACAATGAATCTCAGCTGTATAATGTATTGT
GAAAGAACTTGGCAGTGAACAATGGTGTTCACAAGATATATGTCTTTCCCTTACAATCGA
CATCACACTTCCAACAAAGGAAAGGATGGATCTTCCAGGAGTGAGTCAATCCTGGAATTG
TTTAGGTGGCTTGCCTCTTCAATTTCCTCGCATATCATTATGTACATTTGTACGAGGAGA
ACAAGGCAAAACCACATAACACCATTTTTTTCAGGATAGTTCAAACAACAGTCCATTCAC
TATCTTGTGCAACCACCCTCCCCTCATCTTCAACAATTGTGGGTACCTGTGAGACTCTCT
TTTCAAAAAGCGTTGATTTGGCTTCTAATATGCGCGATAAGAGGGTAAAGCCTTGCTCCG
ATTTCGCATTGATGGAGCCCTTCTGCTCGTTTACCGACCGCTTTTGTATGCTCCTCTCAT
TTGCAACCAAATTGT
■■Homology search results ■■ -
sp_hit_id Q0KL02
Definition sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus
Align length 49
Score (bit) 32.7
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916554|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_A02.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus mus...    33   0.93 
sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sa...    32   1.6  
sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenor...    31   2.7  
sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio r...    30   4.6  
sp|Q6PUA2|TAF1B_ARATH Transcription initiation factor TFIID subu...    30   4.6  
sp|Q91765|FXA2A_XENLA Forkhead box protein A2-A OS=Xenopus laevi...    30   6.1  
sp|Q80TS5|ZN423_MOUSE Zinc finger protein 423 OS=Mus musculus GN...    30   7.9  
sp|Q2M1K9|ZN423_HUMAN Zinc finger protein 423 OS=Homo sapiens GN...    30   7.9  

>sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus
            GN=Trio PE=1 SV=2
          Length = 3043

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 296  MDCCLNYPEKNGVMWFCLVLLVQMYIMICEEIEEASHLNNSRIDSLLED 150
            ++ CL  PEK G ++      + MYI+ C+   ++ H+ +  ID+  ED
Sbjct: 1975 LEKCLEDPEKLGSLFVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFED 2023


>sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sapiens
            GN=TRIO PE=1 SV=1
          Length = 3038

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 296  MDCCLNYPEKNGVMWFCLVLLVQMYIMICEEIEEASHLNNSRIDSLLED 150
            ++ CL  PEK G ++      + MYI  C+   ++ H+ +  ID+  ED
Sbjct: 1975 LEKCLEDPEKLGSLFVKHERRLHMYIAYCQNKPKSEHIVSEYIDTFFED 2023


>sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5
           OS=Caenorhabditis elegans GN=pme-5 PE=2 SV=1
          Length = 2276

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 451 NEQKGSINAKSEQGFTLLSRILE-AKSTLFEKRVSQVPTIVEDEGRVVAQDS 299
           ++ K +INAK   G TLLS +L  A  T+ ++ +SQ+  +V  +      DS
Sbjct: 623 HKDKANINAKDNNGATLLSNLLSYADETMHKELLSQIEYLVARKADASLADS 674


>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio
            GN=trio PE=3 SV=1
          Length = 3028

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 296  MDCCLNYPEKNGVMWFCLVLLVQMYIMICEEIEEASHLNNSRIDSLLED 150
            ++ CL  P++ G ++      + MYI+ C+   ++ H+ +  ID+  ED
Sbjct: 1985 LEKCLEDPDRLGPLFLKHERRLHMYIVYCQNKPKSEHIVSEYIDTYFED 2033


>sp|Q6PUA2|TAF1B_ARATH Transcription initiation factor TFIID subunit
           1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1
          Length = 1786

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = -3

Query: 382 AKSTLFEKRVSQVPTI-VEDEGRVVAQDSE 296
           +++TL EKRV+ +PT+ +ED+G V+ Q SE
Sbjct: 118 SEATLDEKRVTPLPTLYLEDDGMVILQFSE 147


>sp|Q91765|FXA2A_XENLA Forkhead box protein A2-A OS=Xenopus laevis
           GN=foxa2-A PE=1 SV=1
          Length = 434

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 246 PCSPRTNVHNDMRGN*RGKPPKQFQD*LTPGRSILSFVGSVMSIVRERHISCEHHCSLPS 67
           PC  +     DM+ + +G  PK      +  + +LS   SV+S   + H+  EHH S   
Sbjct: 291 PCQEQKRSLVDMKSS-QGLSPKHATSPASQAQHLLSQHHSVLSHEAQSHLKPEHHYSFNH 349

Query: 66  SFTIH 52
            F+I+
Sbjct: 350 PFSIN 354


>sp|Q80TS5|ZN423_MOUSE Zinc finger protein 423 OS=Mus musculus
           GN=Znf423 PE=1 SV=2
          Length = 1292

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
 Frame = +3

Query: 189 ACLFNF-----LAYHYVHLYEENKAKPHNTIFFRIVQTTVHSLSCATTLPSSSTIVGTCE 353
           AC ++F     L  H  H +  N AK H  IF     +T   L C  T  S       C 
Sbjct: 762 ACNWDFRKEADLQVHVKHSHLGNPAKAHKCIFCGETFSTEVELQCHITTHSKKYNCRFCS 821

Query: 354 TLFSKSVDLASNMRDK 401
             F   + L  ++R+K
Sbjct: 822 KAFHAVILLEKHLREK 837


>sp|Q2M1K9|ZN423_HUMAN Zinc finger protein 423 OS=Homo sapiens
           GN=ZNF423 PE=1 SV=1
          Length = 1284

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
 Frame = +3

Query: 189 ACLFNF-----LAYHYVHLYEENKAKPHNTIFFRIVQTTVHSLSCATTLPSSSTIVGTCE 353
           AC ++F     L  H  H +  N AK H  IF     +T   L C  T  S       C 
Sbjct: 754 ACNWDFRKEADLQVHVKHSHLGNPAKAHKCIFCGETFSTEVELQCHITTHSKKYNCKFCS 813

Query: 354 TLFSKSVDLASNMRDK 401
             F   + L  ++R+K
Sbjct: 814 KAFHAIILLEKHLREK 829
tr_hit_id A9SFI9
Definition tr|A9SFI9|A9SFI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916554|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_A02.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SFI9|A9SFI9_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.3  
tr|A9T509|A9T509_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.6  
tr|B4P4H2|B4P4H2_DROYA GE13359 OS=Drosophila yakuba GN=GE13359 P...    33   5.6  
tr|B0EP95|B0EP95_ENTDI Putative uncharacterized protein OS=Entam...    33   7.3  
tr|A6QQZ8|A6QQZ8_BOVIN TRIO protein OS=Bos taurus GN=TRIO PE=2 SV=1    33   9.5  
tr|Q6CK97|Q6CK97_KLULA KLLA0F12430p OS=Kluyveromyces lactis GN=K...    33   9.8  

>tr|A9SFI9|A9SFI9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164628 PE=4 SV=1
          Length = 771

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -3

Query: 478 ERSIQKRSVNEQKGSINAKSEQGFTLLSRILEAKSTLFEKRVSQVPTIVEDEGRVVAQDS 299
           E+   +RS++ Q+   + K + G  L SRI E KS+ FEK+  +     E+         
Sbjct: 708 EKVTLRRSIDHQQTQHHVKGDFG-QLFSRIFEVKSSFFEKKHLRPFNADEERRPAPTVSG 766

Query: 298 EWTVV 284
           EWT+V
Sbjct: 767 EWTLV 771


>tr|A9T509|A9T509_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_168098 PE=4 SV=1
          Length = 1041

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -3

Query: 463  KRSVNEQKGSINAKSEQGFTLLSRILEAKSTLFEKRVSQVPTIVEDEGRVVAQDSEWTVV 284
            ++S+++ +     K++ G  L SRI E KS++FEK+ S+    + DE        EWT V
Sbjct: 985  RKSIDQPQAQQFVKADFGH-LFSRIFEGKSSIFEKKHSR--PFIADERPTPTVSGEWTFV 1041


>tr|B4P4H2|B4P4H2_DROYA GE13359 OS=Drosophila yakuba GN=GE13359 PE=4
           SV=1
          Length = 423

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 207 LAYHYVHLYEENKAKPHNTIFFRIVQTTVHSLSCATTLPSSSTIVGTC 350
           L YH+ H      +  +N +  ++ + T+HSL+      SS  IV TC
Sbjct: 179 LVYHFGHKSPSGNSILYNAVVSKMAEVTLHSLNSNKRTKSSGIIVNTC 226


>tr|B0EP95|B0EP95_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_237530 PE=4 SV=1
          Length = 473

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = +3

Query: 102 VFPLQSTSHFQQRKGWIFQE*VNPGIV*VACLFNFLAYHYVHLYEENKAKPHNTIFFRIV 281
           +FP   T H   R   IF +           +F ++ ++YV  +E  + K    ++  I+
Sbjct: 52  LFPNIETFHIYNRSDEIFND---------GKIFKYVIWYYVDYWEYLQEKEKGDVYKNII 102

Query: 282 QTTVHSLSCATTLPSSSTIVG-TCETLFSKSVDLASNMRDKRVKP 413
            T         T+P   TI+G  C    S    +   MR K + P
Sbjct: 103 YTNYDRKKYGNTIPPEVTILGYECFNGCSSLSSITMPMRIKELGP 147


>tr|A6QQZ8|A6QQZ8_BOVIN TRIO protein OS=Bos taurus GN=TRIO PE=2 SV=1
          Length = 1403

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 296 MDCCLNYPEKNGVMWFCLVLLVQMYIMICEEIEEASHLNNSRIDSLLED 150
           ++ CL  PEK G ++      + MYI+ C+   ++ H+ +  ID+  ED
Sbjct: 337 LEKCLEDPEKLGSLFVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFED 385


>tr|Q6CK97|Q6CK97_KLULA KLLA0F12430p OS=Kluyveromyces lactis
            GN=KLLA0F12430g PE=4 SV=1
          Length = 2671

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = -1

Query: 177  FQD*LTPGRSILSFVGSVMSIVRERHISCEHHCSLPSSFTIHYTAEIHCNVMKTTL 10
            FQD   P +SI+S + S++++  +  ++ E+  SL  + +IH T E  C ++K+ L
Sbjct: 991  FQDTSIPRQSIVSVLLSLLALPSKAKLAKEYFISLCQNISIHPTKEDLCLLLKSLL 1046