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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916557
Clone id YMU001_000089_A05
Library
Length 246
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCCAACTACAAGCTTGGGAAGCCCTGCTTCTCACGCCTCTGTGCAGTTCCTCAACTCC
GTCTTGTCCCAGAGAGGACCCAACGCACTTCCTTACGAAGAAAACGTGAAGTTCACCATA
AGATCTCACCTTGTGAACTTGCTGGAAGAGTTCCCCAGGCCTACAGGTCAAAACAGAAAA
CTTCACTCACAACGATGGCAAGGCCTGCAACCTCCTTCAAGTCGATGGCACCATCCCCAT
GTACTA
■■Homology search results ■■ -
sp_hit_id P03210
Definition sp|P03210|YRR2_EBV Uncharacterized protein BRRF2 OS=Epstein-Barr virus (strain B95-8)
Align length 48
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916557|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_A05.
         (246 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03210|YRR2_EBV Uncharacterized protein BRRF2 OS=Epstein-Barr...    30   3.7  
sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-contain...    30   4.9  
sp|Q8BG30|NELFA_MOUSE Negative elongation factor A OS=Mus muscul...    30   4.9  
sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425 O...    29   6.4  
sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Dro...    29   6.4  
sp|P02877|HEVE_HEVBR Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE...    29   6.4  
sp|P04637|P53_HUMAN Cellular tumor antigen p53 OS=Homo sapiens G...    29   8.3  

>sp|P03210|YRR2_EBV Uncharacterized protein BRRF2 OS=Epstein-Barr
           virus (strain B95-8) GN=BRRF2 PE=3 SV=1
          Length = 537

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  LRRKREVHHKISP-CELAGRVPQAYRSKQKTSLTTMARPATSFKSMAP 233
           L +  E    +SP C +A   P A RSKQ   +T  ++ A SF S+AP
Sbjct: 390 LAKPEETSPAVSPVCPIAS--PAASRSKQHCGVTGSSQAAPSFSSVAP 435


>sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-containing
           protein 1 OS=Homo sapiens GN=KANK1 PE=2 SV=3
          Length = 1352

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 213 RLQALPSL*VKFSVLTCRPGELFQQVHKVRSYGELHVFFVRKCVGSSLGQDGVEELHRGV 34
           +++ +P L VK SVL     +L  Q+   R+  +++V  VRK   S+     +E+L R  
Sbjct: 280 QVRTIPVLQVKISVLQEEKRQLVSQLKNQRAASQINVCGVRKRSYSAGNASQLEQLSRAR 339

Query: 33  RS 28
           RS
Sbjct: 340 RS 341


>sp|Q8BG30|NELFA_MOUSE Negative elongation factor A OS=Mus musculus
           GN=Whsc2 PE=2 SV=1
          Length = 530

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 108 EVHHKISPCELAGRVPQAYRSKQKTSLTTMARPAT 212
           E+  K+S CE +  +P   +   K +LTT+A P T
Sbjct: 123 ELREKVSECEASAMLPLECQYLNKNALTTLAGPLT 157


>sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425
           OS=Mycoplasma genitalium GN=MG425 PE=3 SV=1
          Length = 449

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 82  NALPYEENVKFTIRSHLVNLLEEFPRPTGQNRKLHSQRWQ 201
           NA PY+ N +  + S L       P    Q +K+H   WQ
Sbjct: 407 NAKPYDRNKRVPLASDLFKSRMRQPEKAMQKQKIHDNDWQ 446


>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire
           OS=Drosophila melanogaster GN=hay PE=2 SV=2
          Length = 798

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 22  SPASHASVQFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEF-PRPTGQNRKL 183
           +P+   S QFL     QRG   + + +NV F ++ + + + + F   PT QN ++
Sbjct: 553 NPSKFRSCQFLIKYHEQRGDKTIVFSDNV-FALKHYAIKMNKPFIYGPTSQNERI 606


>sp|P02877|HEVE_HEVBR Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1
           SV=2
          Length = 204

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 245 STWGWCHRLEGGCRPCHRCE 186
           S WGWC   +  C P H C+
Sbjct: 36  SQWGWCGSTDEYCSPDHNCQ 55


>sp|P04637|P53_HUMAN Cellular tumor antigen p53 OS=Homo sapiens
           GN=TP53 PE=1 SV=3
          Length = 393

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 15  LGKPCFS-RLCAVPQLRLVPERTQRTSLRRKREVHHKISP 131
           LG+  F  R+CA P       RT+  +LR+K E HH++ P
Sbjct: 265 LGRNSFEVRVCACPGR---DRRTEEENLRKKGEPHHELPP 301
tr_hit_id A9S7R6
Definition tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 58.5
E-value 6.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916557|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_A05.
         (246 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella paten...    59   6e-16
tr|A9TJ74|A9TJ74_PHYPA Predicted protein OS=Physcomitrella paten...    59   1e-15
tr|A9PJF9|A9PJF9_POPJC Putative uncharacterized protein OS=Popul...    57   1e-14
tr|A7QHJ8|A7QHJ8_VITVI Chromosome chr5 scaffold_98, whole genome...    56   3e-14
tr|B8AFJ3|B8AFJ3_ORYSI Putative uncharacterized protein OS=Oryza...    59   5e-14
tr|Q6ESB7|Q6ESB7_ORYSJ Os02g0833300 protein OS=Oryza sativa subs...    59   5e-14
tr|A3AD24|A3AD24_ORYSJ Putative uncharacterized protein OS=Oryza...    59   5e-14
tr|Q9LHG8|Q9LHG8_ARATH And human tumor susceptibility gene-like ...    53   2e-13
tr|A7PKJ3|A7PKJ3_VITVI Chromosome chr15 scaffold_19, whole genom...    54   9e-12
tr|Q9FFY6|Q9FFY6_ARATH Similarity to nascent polypeptide associa...    51   3e-11
tr|A8IU80|A8IU80_CHLRE Subunit of the ESCRT-I complex OS=Chlamyd...    50   6e-05
tr|A5BKV4|A5BKV4_VITVI Putative uncharacterized protein OS=Vitis...    35   0.12 
tr|B3RIA3|B3RIA3_TRIAD Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q5B763|Q5B763_EMENI Putative uncharacterized protein OS=Emeri...    33   5.5  
tr|Q5C2L5|Q5C2L5_SCHJA SJCHGC08434 protein (Fragment) OS=Schisto...    33   5.5  
tr|A7SAT5|A7SAT5_NEMVE Predicted protein OS=Nematostella vectens...    33   7.2  
tr|Q4PAN2|Q4PAN2_USTMA Putative uncharacterized protein OS=Ustil...    33   7.2  

>tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182103 PE=4 SV=1
          Length = 369

 Score = 58.5 bits (140), Expect(2) = 6e-16
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +1

Query: 19  GSPASHASVQFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           G+P S +  QFLN  LSQRGP AL Y E+ K+TIR HL+ +L+EFP
Sbjct: 6   GTPNSQSVTQFLNQALSQRGPQALAYVEDDKWTIREHLLKVLQEFP 51



 Score = 48.9 bits (115), Expect(2) = 6e-16
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPMY 244
           PGLQVKT  F HNDG+  NLLQ +GTIPM+
Sbjct: 51  PGLQVKTAVFNHNDGRILNLLQAEGTIPMF 80


>tr|A9TJ74|A9TJ74_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170379 PE=4 SV=1
          Length = 409

 Score = 58.9 bits (141), Expect(2) = 1e-15
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +1

Query: 19  GSPASHASVQFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           G+P S +  QFLN  LSQRGP AL Y E+ K+TIR HL+ +L+EFP
Sbjct: 6   GTPNSQSVTQFLNQALSQRGPQALAYVEDEKWTIREHLLKVLQEFP 51



 Score = 47.8 bits (112), Expect(2) = 1e-15
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPMY 244
           PGLQVK+  F HNDG+  NLLQ +GTIPM+
Sbjct: 51  PGLQVKSAVFNHNDGRTLNLLQAEGTIPMF 80


>tr|A9PJF9|A9PJF9_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 403

 Score = 56.6 bits (135), Expect(2) = 1e-14
 Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  PASHASVQ-FLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           P +H ++Q FL+SVLSQRGP+ALPY E+ K+ IR HLV+L   FP
Sbjct: 5   PPNHQAIQQFLSSVLSQRGPSALPYTEDTKWLIRQHLVSLTSTFP 49



 Score = 46.6 bits (109), Expect(2) = 1e-14
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPM 241
           P L+ KT  FTHNDG+  NLLQ DGT+PM
Sbjct: 49  PSLEPKTATFTHNDGRTVNLLQADGTVPM 77


>tr|A7QHJ8|A7QHJ8_VITVI Chromosome chr5 scaffold_98, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038814001
           PE=4 SV=1
          Length = 425

 Score = 55.8 bits (133), Expect(2) = 3e-14
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = +1

Query: 22  SPASHASVQFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           SP    + Q+L+SVLSQRGP+ALPY E+VK+ IR HL++L E +P
Sbjct: 17  SPNPQLTQQWLSSVLSQRGPSALPYAEDVKWLIRQHLLSLSENYP 61



 Score = 45.8 bits (107), Expect(2) = 3e-14
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPM 241
           P LQ KT  +THNDG+  NLLQ DGT+PM
Sbjct: 61  PSLQPKTATYTHNDGRTVNLLQSDGTVPM 89


>tr|B8AFJ3|B8AFJ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09582 PE=4 SV=1
          Length = 487

 Score = 58.5 bits (140), Expect(2) = 5e-14
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   PTTSLGSPASHASV--QFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           P +   SPAS A    QFLN+ LSQRGP+ALPY E+VK+ IR+HLV L + FP
Sbjct: 5   PPSPSPSPASGAQYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVALADAFP 57



 Score = 42.4 bits (98), Expect(2) = 5e-14
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPMY 244
           P L  K   FTHNDG+A +LLQ DGTIP++
Sbjct: 57  PSLHPKAALFTHNDGRAAHLLQADGTIPIH 86


>tr|Q6ESB7|Q6ESB7_ORYSJ Os02g0833300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1282_E10.10 PE=2 SV=1
          Length = 402

 Score = 58.5 bits (140), Expect(2) = 5e-14
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   PTTSLGSPASHASV--QFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           P +   SPAS A    QFLN+ LSQRGP+ALPY E+VK+ IR+HLV L + FP
Sbjct: 5   PPSPSPSPASGAQYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVALADAFP 57



 Score = 42.4 bits (98), Expect(2) = 5e-14
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPMY 244
           P L  K   FTHNDG+A +LLQ DGTIP++
Sbjct: 57  PSLHPKAALFTHNDGRAAHLLQADGTIPIH 86


>tr|A3AD24|A3AD24_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008696 PE=4 SV=1
          Length = 261

 Score = 58.5 bits (140), Expect(2) = 5e-14
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   PTTSLGSPASHASV--QFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           P +   SPAS A    QFLN+ LSQRGP+ALPY E+VK+ IR+HLV L + FP
Sbjct: 5   PPSPSPSPASGAQYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVALADAFP 57



 Score = 42.4 bits (98), Expect(2) = 5e-14
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPMY 244
           P L  K   FTHNDG+A +LLQ DGTIP++
Sbjct: 57  PSLHPKAALFTHNDGRAAHLLQADGTIPIH 86


>tr|Q9LHG8|Q9LHG8_ARATH And human tumor susceptibility gene-like
           protein (Putative uncharacterized protein At3g12400)
           (Putative uncharacterized protein) (Putative
           uncharacterized protein T2E22.28) OS=Arabidopsis
           thaliana GN=T2E22.28 PE=2 SV=1
          Length = 398

 Score = 52.8 bits (125), Expect(2) = 2e-13
 Identities = 22/37 (59%), Positives = 31/37 (83%)
 Frame = +1

Query: 46  QFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           QFL+S LSQRGP+++PYEE+ K+ IR HL+NL+  +P
Sbjct: 13  QFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYP 49



 Score = 46.2 bits (108), Expect(2) = 2e-13
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 149 SSPGLQVKTENFTHNDGKACNLLQVDGTIPM 241
           S P L+ KT +F HNDG++ NLLQ DGTIPM
Sbjct: 47  SYPSLEPKTASFMHNDGRSVNLLQADGTIPM 77


>tr|A7PKJ3|A7PKJ3_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019200001
           PE=3 SV=1
          Length = 504

 Score = 53.9 bits (128), Expect(2) = 9e-12
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = +1

Query: 13  SLGSPASHASVQFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEFP 156
           S  S    +S QFL SVLS+RGP+ALPY E+VK+ IR H ++L + FP
Sbjct: 3   SSSSSPPQSSHQFLTSVLSRRGPSALPYAEDVKWMIRQHFLSLADAFP 50



 Score = 39.3 bits (90), Expect(2) = 9e-12
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 155 PGLQVKTENFTHNDGKACNLLQVDGTIPM 241
           P L  +T  +THNDG+  NLL+V+G IPM
Sbjct: 50  PALHPQTAAYTHNDGRTVNLLRVEGNIPM 78


>tr|Q9FFY6|Q9FFY6_ARATH Similarity to nascent polypeptide associated
           complex alpha chain OS=Arabidopsis thaliana GN=At5g13860
           PE=4 SV=1
          Length = 368

 Score = 50.8 bits (120), Expect(2) = 3e-11
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +1

Query: 46  QFLNSVLSQRGPNALPYEENVKFTIRSHLVNLLEEF 153
           QFL+S L+QRGP+ALPY EN K  IR HL+NL+  +
Sbjct: 13  QFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSY 48



 Score = 40.8 bits (94), Expect(2) = 3e-11
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = +2

Query: 149 SSPGLQVKTENFTHNDGKACNLLQVDGTIPM 241
           S   L  KT  FTHNDG++  LLQ DGTIPM
Sbjct: 47  SYTSLDPKTATFTHNDGRSVILLQADGTIPM 77