| BP916560 |
| Clone id |
YMU001_000089_A08 |
| Library |
YMU01 |
| Length |
435 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000089_A08. |
| Accession |
BP916560 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL2873Contig1 |
| Sequence |
GCAAAAGATACTTAATAATGACAAGGTGCCGAGGATGGAAACAGGAACAATAAATGTTGG
TCAGAATTTCGTATCTGCATACCAGGAGAGAATGGCTATGGAGGTTGTGACCTGTGTAAA
CAATCTACAAAGTAGATGTGATATGCTTGAAGATGCAAGTGCAATTTTGGGCTGTGCAGC
ATGTTGCTCTGGCATTGAAAGTACAAGTGACGGGTCACTACACAACAATTGTTTGCAAGA
GAATTATTTATACACCGATGTGCTTGCAAGTGCTGTTGGTGGGAGACCTTTTATCGGCCA
GTTGCATAGTTCTCAAATAGACACCAATAACCAATTTTTCACATCAAACATCCTCAACCA
ACAAATGTCCTCCTATGTATACGCAAAGCGGTTACGGAAGAGGCCAGGCATATCCCTAGA
AGAGGAGACAGCAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q2IBD8 |
| Definition |
sp|Q2IBD8|MET_PONAB Hepatocyte growth factor receptor OS=Pongo abelii |
| Align length |
37 |
| Score (bit) |
31.2 |
| E-value |
1.9 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A0BM26 |
| Definition |
tr|A0BM26|A0BM26_PARTE Chromosome undetermined scaffold_115, whole genome shotgun sequence OS=Paramecium tetraurelia |
| Align length |
129 |
| Score (bit) |
36.6 |
| E-value |
0.64 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916560|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_A08.
(435 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A0BM26|A0BM26_PARTE Chromosome undetermined scaffold_115, who... 37 0.64
tr|A1ZHG8|A1ZHG8_9SPHI Putative uncharacterized protein OS=Micro... 36 1.1
tr|Q3SZW8|Q3SZW8_BOVIN Zinc finger, MYM-type 1 OS=Bos taurus GN=... 35 1.4
tr|A6GUB0|A6GUB0_9BURK Ubiquinone biosynthesis O-methyltransfera... 35 1.9
tr|Q239S2|Q239S2_TETTH Zinc finger domain, LSD1 subclass family ... 34 3.2
tr|A5UM93|A5UM93_METS3 Adhesin-like protein OS=Methanobrevibacte... 34 4.2
tr|A1WJ97|A1WJ97_VEREI Putative N,N-dimethylformamidase OS=Vermi... 33 5.4
tr|A5DWT6|A5DWT6_LODEL Putative uncharacterized protein OS=Lodde... 33 5.4
tr|Q3EZP6|Q3EZP6_BACTI Collagen adhesion protein OS=Bacillus thu... 33 7.1
tr|Q7UIT5|Q7UIT5_RHOBA Putative uncharacterized protein OS=Rhodo... 33 9.3
>tr|A0BM26|A0BM26_PARTE Chromosome undetermined scaffold_115, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00030227001 PE=4 SV=1
Length = 2544
Score = 36.6 bits (83), Expect = 0.64
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Frame = +2
Query: 26 VPRMETGTINVGQNFVSAYQERMAMEVVTCVNNLQ--SRCDMLEDASAILGCAACCSGIE 199
+ ++ +++V N++ ++E ++ + N Q ++E S G S E
Sbjct: 1009 IDSLQISSLSVVDNYMIGFEENDGNKITVTIQNSQFFDNNILVESTSVNSGIIKFISNSE 1068
Query: 200 ST---SDGSLHNNCLQENYLYTDVLASAVGGRPFIGQLHSSQIDTNNQFFTSNILNQQMS 370
ST NN L Y Y+ S +G I L S + NNQF + +N S
Sbjct: 1069 STIAFQYSQAANNIL---YSYSSDQNSLLGTVLMISNLFGSIVINNNQFINNQAINTTFS 1125
Query: 371 -SYVYAKRL 394
SY YA+++
Sbjct: 1126 ISYFYAQQV 1134
>tr|A1ZHG8|A1ZHG8_9SPHI Putative uncharacterized protein
OS=Microscilla marina ATCC 23134 GN=M23134_05308 PE=4
SV=1
Length = 834
Score = 35.8 bits (81), Expect = 1.1
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +2
Query: 41 TGTINVGQNFVSAYQERMAMEVVTCVNNLQSRCDMLEDASAILGCAACCSGIESTSDGSL 220
T +NVG + S ++ A + V+N+Q R ++ S+ + A ES +L
Sbjct: 325 TSFVNVGVGYSSGRRQIAAESTQSMVDNIQQRANLARRYSSSIVMEANQVAQESVITRAL 384
Query: 221 --HNNCLQENYLYTDVLASAVGGRPFIGQ--LHSSQIDTNNQFFTSNILNQQ 364
HN+C N Y V+ + FIG+ ++ Q + NN F N++ Q
Sbjct: 385 CNHNHCHTLNVFYYQVIQHYLIQNTFIGEGDIYWVQYE-NNGFTEENVIRYQ 435
>tr|Q3SZW8|Q3SZW8_BOVIN Zinc finger, MYM-type 1 OS=Bos taurus
GN=ZMYM1 PE=2 SV=1
Length = 365
Score = 35.4 bits (80), Expect = 1.4
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Frame = +2
Query: 62 QNFVSAYQERMAMEVVTCVNNLQSRCDMLEDASAI------------LGCAACCSGIEST 205
Q+ +S+Y+E+ V C N++ ++C M + +AI L C AC S S
Sbjct: 165 QSCLSSYEEKRKPVVTICANSVSAKCSMCQTTTAIQYEVKYQSVKHSLCCNACFSKFHSA 224
Query: 206 SDGSLHNNCLQENYLYTDVLASAVGGRPFIGQLH----SSQIDTNNQ 334
+ +L NC + Y +S GQ H S I T+ Q
Sbjct: 225 N--NLIMNCCENCGAYCSTSSSMFHILQMEGQSHYFNSSKSITTHKQ 269
>tr|A6GUB0|A6GUB0_9BURK Ubiquinone biosynthesis O-methyltransferase
OS=Limnobacter sp. MED105 GN=LMED105_15414 PE=4 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 1.9
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 5 KILNNDKVPRMETGTINVGQNFVSAYQ----ERMAMEVVTCVNNLQSRCDMLEDASAILG 172
K L ++ ++ETG NV FVSA Q ER +VVTC+ L+ + + A I
Sbjct: 86 KSLKVAELHKLETGVNNVNYRFVSAEQLAAEERGTFDVVTCLEMLE---HVPDPAQTIQA 142
Query: 173 CAACC 187
CA C
Sbjct: 143 CADLC 147
>tr|Q239S2|Q239S2_TETTH Zinc finger domain, LSD1 subclass family
protein OS=Tetrahymena thermophila SB210
GN=TTHERM_01358380 PE=4 SV=1
Length = 2739
Score = 34.3 bits (77), Expect = 3.2
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 167 LGCAACCSGIESTSDGSLHNNCL---QENYLYTDVLASAVGGRPFIGQLHSSQIDTNNQF 337
+ C +C S + T +G NNCL Q NYLY D S+V D NNQ+
Sbjct: 952 INCVSCNSSCQ-TCNGQSPNNCLSCPQGNYLYADNSCSSV-------------CDINNQY 997
Query: 338 FTSN 349
F N
Sbjct: 998 FIDN 1001
>tr|A5UM93|A5UM93_METS3 Adhesin-like protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_1116
PE=4 SV=1
Length = 1491
Score = 33.9 bits (76), Expect = 4.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +2
Query: 212 GSLHNNCLQENYLYTD----VLASAVGGRPFIGQLHSSQIDTNN 331
G H N + +NYLYTD + S+ GG F+G + + + NN
Sbjct: 211 GGAHYNYIADNYLYTDDANGIYLSSYGGGAFVGAISNYNVIFNN 254
>tr|A1WJ97|A1WJ97_VEREI Putative N,N-dimethylformamidase
OS=Verminephrobacter eiseniae (strain EF01-2)
GN=Veis_1952 PE=4 SV=1
Length = 773
Score = 33.5 bits (75), Expect = 5.4
Identities = 26/69 (37%), Positives = 30/69 (43%)
Frame = +2
Query: 221 HNNCLQENYLYTDVLASAVGGRPFIGQLHSSQIDTNNQFFTSNILNQQMSSYVYAKRLRK 400
HN+C + N GG F + ID N + L QM S VYA RLR
Sbjct: 315 HNDCFRLN-------PKEYGGVEFHAD---AMIDCNWECTKRVTLPAQMKSGVYAMRLRA 364
Query: 401 RPGISLEEE 427
PGI L EE
Sbjct: 365 GPGIGLAEE 373
>tr|A5DWT6|A5DWT6_LODEL Putative uncharacterized protein
OS=Lodderomyces elongisporus GN=LELG_01823 PE=4 SV=1
Length = 1156
Score = 33.5 bits (75), Expect = 5.4
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 17/59 (28%)
Frame = -2
Query: 278 QQHLQAHRCIN---------NSLANNCC--------VVTRHLYFQCQSNMLHSPKLHLH 153
QQ Q H CIN N+ NNCC + T Q NML SP +HLH
Sbjct: 1086 QQQQQHHSCINCINCINRNNNNNNNNCCNRKLMLNLMKTIQFSMQFVCNMLGSPNIHLH 1144
>tr|Q3EZP6|Q3EZP6_BACTI Collagen adhesion protein OS=Bacillus
thuringiensis serovar israelensis ATCC 35646
GN=RBTH_05967 PE=4 SV=1
Length = 666
Score = 33.1 bits (74), Expect = 7.1
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 221 HNNCLQENYLY---TDVLASAVGGRPFIGQLHSSQIDTNNQFFTSNILNQQMSSYVYAKR 391
H+N +QE Y+Y TD + + G F L+ + + N FT N+ N + + A+
Sbjct: 92 HSNAIQETYMYVIPTDKQEAKLNGEYFETSLYQVESNAKNGVFTVNLKNAPNGTKIVAEN 151
Query: 392 LRKRPGISLEEE 427
+ L E+
Sbjct: 152 EEMKEQFQLGEK 163
>tr|Q7UIT5|Q7UIT5_RHOBA Putative uncharacterized protein
OS=Rhodopirellula baltica GN=RB12333 PE=4 SV=1
Length = 73
Score = 32.7 bits (73), Expect = 9.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 190 RATCCTAQNCTC-IFKHITSTL*IVYTGHNLHSHSLLVCRYEILTNIYCSCFHPRHLVII 14
R TCCTAQ C C +H+ S V+ +S L+ R+E T CF V+
Sbjct: 19 RKTCCTAQTCACRTLQHVASCATFVF-------NSTLIDRFERSTR----CFFQTFFVLF 67
Query: 13 K 11
K
Sbjct: 68 K 68
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