BP916566
Clone id YMU001_000089_B02
Library
Length 353
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGGGTGCTGAGTCTGATGGTCAAACTGTGATCTACAATCATTTAGTCTTGAAGTCATAT
ATGCATGATCAACCGTCTCATTGGGAGTATTATCTCTTCCTAGTTCAAGCAATTCTAAAT
AATTCCTATTCCAATGCCGTTGGTAGAACTCCGTGTATGGTAGCATCTGGCCGTCCTTTC
CAATCTTTGTTGACGTAGATCGGTTGGTCAGTTGCCTGATGCCAATGTTGAGAGCGAGTC
CTTGAAAGAGATTACTACGAGTGTGAAGCTTCGGCTAAGCAAGGCTTAAGAATCTTATTC
TCGACGCGCTAATAAGCATCGTCAGGATGTTACTATTAAGGAAGGGGATAGAG
■■Homology search results ■■ -
sp_hit_id P14324
Definition sp|P14324|FPPS_HUMAN Farnesyl pyrophosphate synthetase OS=Homo sapiens
Align length 35
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916566|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_B02.
(353 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P14324|FPPS_HUMAN Farnesyl pyrophosphate synthetase OS=Homo s... 30 3.7
sp|Q8WMY2|FPPS_BOVIN Farnesyl pyrophosphate synthetase OS=Bos ta... 30 3.7
sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3 OS=Homo s... 29 6.3
sp|P05369|FPPS_RAT Farnesyl pyrophosphate synthetase OS=Rattus n... 29 6.3
sp|Q920E5|FPPS_MOUSE Farnesyl pyrophosphate synthetase OS=Mus mu... 29 6.3
sp|P03161|DPOL_GSHV Protein P OS=Ground squirrel hepatitis virus... 29 6.3

>sp|P14324|FPPS_HUMAN Farnesyl pyrophosphate synthetase OS=Homo
sapiens GN=FDPS PE=1 SV=4
Length = 419

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1

Query: 46 VLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRT 150
+LK Y +QP YYL L++ L +SY +G+T
Sbjct: 208 LLKLYCREQP----YYLNLIELFLQSSYQTEIGQT 238


>sp|Q8WMY2|FPPS_BOVIN Farnesyl pyrophosphate synthetase OS=Bos
taurus GN=FDPS PE=1 SV=1
Length = 353

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1

Query: 46 VLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRT 150
+LK Y +QP YYL L++ L +SY +G+T
Sbjct: 142 LLKLYCREQP----YYLDLIELFLQSSYQTEIGQT 172


>sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3 OS=Homo
sapiens GN=SCAND3 PE=2 SV=1
Length = 1325

Score = 29.3 bits (64), Expect = 6.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1

Query: 76 SHWEYYLFLVQAILNNSYSNAVGRTPC 156
SHW +L+ +Q N Y ++ +TPC
Sbjct: 493 SHWTEFLWFIQMSQNQPYHRSMQQTPC 519


>sp|P05369|FPPS_RAT Farnesyl pyrophosphate synthetase OS=Rattus
norvegicus GN=Fdps PE=2 SV=2
Length = 353

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1

Query: 46 VLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRT 150
+LK Y +QP YYL L++ L +SY +G+T
Sbjct: 142 LLKFYCREQP----YYLNLLELFLQSSYQTEIGQT 172


>sp|Q920E5|FPPS_MOUSE Farnesyl pyrophosphate synthetase OS=Mus
musculus GN=Fdps PE=2 SV=1
Length = 353

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1

Query: 46 VLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRT 150
+LK Y +QP YYL L++ L +SY +G+T
Sbjct: 142 LLKFYCREQP----YYLNLLELFLQSSYQTEIGQT 172


>sp|P03161|DPOL_GSHV Protein P OS=Ground squirrel hepatitis virus
(strain 27) GN=P PE=3 SV=1
Length = 881

Score = 29.3 bits (64), Expect = 6.3
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = -2

Query: 334 SNILTMLISASRIRF----LSLA*PKLHTRSNLFQGLALNIGIRQLTNRSTSTKIGKDGQ 167
+N++T L S +F PK+H +NLFQ L G TN K+ +
Sbjct: 61 TNVITGLYSTQTEKFNCNWKQPVFPKIHLDNNLFQKLENYFG-PLTTNEKRRLKLVFPAR 119

Query: 166 MLPYTEFYQRHWNRNYLELLELGRDNTPNETVDHAY 59
P Y LL+ +D PN T++H +
Sbjct: 120 FFPNA--------TKYFPLLKGIKDKYPNYTIEHFF 147


tr_hit_id Q7XPW2
Definition tr|Q7XPW2|Q7XPW2_ORYSJ OSJNBa0032F06.19 protein OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 43.5
E-value 0.005
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916566|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_B02.
(353 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XPW2|Q7XPW2_ORYSJ OSJNBa0032F06.19 protein OS=Oryza sativa ... 44 0.005
tr|Q2QZI0|Q2QZI0_ORYSJ Retrotransposon protein, putative, unclas... 44 0.005
tr|Q0J8X5|Q0J8X5_ORYSJ Os04g0682600 protein (Fragment) OS=Oryza ... 44 0.005
tr|Q0IR25|Q0IR25_ORYSJ Os11g0686400 protein OS=Oryza sativa subs... 44 0.005
tr|A5AJJ1|A5AJJ1_VITVI Putative uncharacterized protein OS=Vitis... 43 0.007
tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse tran... 42 0.012
tr|Q8W150|Q8W150_ORYSJ Polyprotein OS=Oryza sativa subsp. japoni... 42 0.020
tr|Q7XP97|Q7XP97_ORYSJ OSJNBa0060B20.14 protein OS=Oryza sativa ... 42 0.020
tr|Q7XBS7|Q7XBS7_ORYSJ Retrotransposon protein, putative, unclas... 42 0.020
tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subs... 41 0.026
tr|Q01L72|Q01L72_ORYSA H0321H01.8 protein OS=Oryza sativa GN=H03... 41 0.026
tr|A5BZW2|A5BZW2_VITVI Putative uncharacterized protein OS=Vitis... 41 0.034
tr|Q2QZQ5|Q2QZQ5_ORYSJ Retrotransposon protein, putative, unclas... 40 0.044
tr|Q0IR52|Q0IR52_ORYSJ Os11g0677100 protein OS=Oryza sativa subs... 40 0.044
tr|Q0DB93|Q0DB93_ORYSJ Os06g0590100 protein OS=Oryza sativa subs... 40 0.044
tr|Q7F9M4|Q7F9M4_ORYSJ Os04g0257000 protein OS=Oryza sativa subs... 40 0.057
tr|Q8W151|Q8W151_ORYSJ Polyprotein OS=Oryza sativa subsp. japoni... 40 0.075
tr|Q8GZY6|Q8GZY6_ORYSJ Putative uncharacterized protein OSJNBa00... 39 0.13
tr|Q7XL81|Q7XL81_ORYSJ OSJNBb0014D23.8 protein OS=Oryza sativa s... 39 0.13
tr|Q2R3R3|Q2R3R3_ORYSJ Retrotransposon protein, putative, unclas... 39 0.13
tr|Q0DSV7|Q0DSV7_ORYSJ Os03g0285000 protein OS=Oryza sativa subs... 39 0.13
tr|A5E738|A5E738_LODEL Putative uncharacterized protein OS=Lodde... 39 0.13
tr|Q2R3T4|Q2R3T4_ORYSJ Retrotransposon protein, putative, unclas... 39 0.17
tr|A5DUY1|A5DUY1_LODEL Putative uncharacterized protein OS=Lodde... 39 0.17
tr|Q9ZPG1|Q9ZPG1_ARATH F5K24.7 protein (Putative reverse transcr... 38 0.22
tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa G... 38 0.22
tr|A5BK20|A5BK20_VITVI Putative uncharacterized protein OS=Vitis... 38 0.22
tr|Q8H7X5|Q8H7X5_ORYSJ Putative retroelement (Retrotransposon pr... 38 0.28
tr|Q2R3G0|Q2R3G0_ORYSJ Retrotransposon protein, putative, unclas... 38 0.28
tr|A5BRL2|A5BRL2_VITVI Putative uncharacterized protein OS=Vitis... 38 0.28

>tr|Q7XPW2|Q7XPW2_ORYSJ OSJNBa0032F06.19 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0032F06.19 PE=4 SV=2
Length = 1575

Score = 43.5 bits (101), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASG 171
+SDGQT N V L+ ++H PS W+++L L Q N S+ +A+G TP V G
Sbjct: 1274 QSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 1330


>tr|Q2QZI0|Q2QZI0_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os11g45920 PE=4 SV=2
Length = 2811

Score = 43.5 bits (101), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASG 171
+SDGQT N V L+ ++H PS W+++L L Q N S+ +A+G TP V G
Sbjct: 2510 QSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 2566


>tr|Q0J8X5|Q0J8X5_ORYSJ Os04g0682600 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os04g0682600 PE=4 SV=1
Length = 395

Score = 43.5 bits (101), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASG 171
+SDGQT N V L+ ++H PS W+++L L Q N S+ +A+G TP V G
Sbjct: 94 QSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 150


>tr|Q0IR25|Q0IR25_ORYSJ Os11g0686400 protein OS=Oryza sativa subsp.
japonica GN=Os11g0686400 PE=4 SV=1
Length = 2866

Score = 43.5 bits (101), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASG 171
+SDGQT N V L+ ++H PS W+++L L Q N S+ +A+G TP V G
Sbjct: 2565 QSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 2621


>tr|A5AJJ1|A5AJJ1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043900 PE=4 SV=1
Length = 1593

Score = 43.1 bits (100), Expect = 0.007
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
+SDGQT + N + L+ ++H +P HW L + N +Y ++ G TP GRP
Sbjct: 1078 QSDGQTEVVNRCIEQYLRCFVHHKPRHWNSLLPWAEYWYNTTYHSSTGMTPFQALYGRP 1136


>tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse
transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase
aspartic, active site; Polynucleotidyl transferase,
Ribonuclease H fold OS=Medicago truncatula
GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1
Length = 1297

Score = 42.4 bits (98), Expect = 0.012
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNHLV---LKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
E+DGQT + N + L+ ++ DQP +W ++ + N SY A G TP + GRP
Sbjct: 1030 ETDGQTEVVNRCLETYLRCFIADQPKNWASWIPWAEYWFNTSYHAATGHTPFEMVYGRP 1088


>tr|Q8W150|Q8W150_ORYSJ Polyprotein OS=Oryza sativa subsp. japonica
PE=4 SV=1
Length = 933

Score = 41.6 bits (96), Expect = 0.020
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNH---LVLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
+SDGQT N + L+ ++H P+ W +L L + N+SY +A+ +TP V G P
Sbjct: 628 QSDGQTERVNQCLEIFLRCFVHATPAKWSLWLHLAEFWYNSSYHSALNKTPFEVLYGYP 686


>tr|Q7XP97|Q7XP97_ORYSJ OSJNBa0060B20.14 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0060B20.14 PE=4 SV=1
Length = 3200

Score = 41.6 bits (96), Expect = 0.020
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNH---LVLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
+SDGQT N + L+ ++H P+ W +L L + N+SY +A+ +TP V G P
Sbjct: 2581 QSDGQTERVNQCLEIFLRCFVHATPAKWSLWLHLAEFWYNSSYHSALNKTPFEVLYGYP 2639


>tr|Q7XBS7|Q7XBS7_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os10g42880 PE=4 SV=2
Length = 1459

Score = 41.6 bits (96), Expect = 0.020
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNH---LVLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
+SDGQT N + L+ ++H PS W +L L + N SY +A+ TP V G P
Sbjct: 1236 QSDGQTERVNQCLEIYLRCFVHSVPSKWAAWLHLAEYWYNTSYHSAIHATPFEVLYGHP 1294


>tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subsp.
japonica GN=Os01g0790200 PE=4 SV=1
Length = 519

Score = 41.2 bits (95), Expect = 0.026
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1

Query: 10 ESDGQTVIYNH---LVLKSYMHDQPSHWEYYLFLVQAILNNSYSNAVGRTPCMVASGRP 177
+SDGQT N + L+ ++H PS W +L L + N++Y +++G TP V G P
Sbjct: 189 QSDGQTERVNQCLEIYLRCFVHSTPSKWYSWLHLAEYWYNSTYHSSLGTTPFEVLYGYP 247