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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916579
Clone id YMU001_000089_C04
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTACGGGGGTTCCCAAAAGGAGGTGGAGAACCTGAATTCTCGGCAGAGTCGAGTGAGTGT
GCAAGCTGAAACCCCTTTGCCTGCCACAATTGCTCAGGAAGAATTGGGTAACAAATTCTT
TGGCTTGCAAGAAGATGGAAAAGGTCATGTTGAGTCAGAATCGGGCAGGGTTTCCATGAC
TGCGATGCCGAGTTTGTCTACGGATCCCTACAACAAAAGGGAATCTGAAGCTGTATCTGA
AGCTGAAGCTGAGAGCATTCTTGAAGGATTGGATCCAAGGTTTGAGAATTGGACAGGTTT
ATTGCCAGTCCCTATAGACGCTGATTTGCTTCCTTCAGTTATTCCTAACTACAGACCTCC
CTTCCGGCTGATGCCATATGGAATTAGACCAAGGATTTCAGACTCGGAGCTTACTAACCT
TCGACGGCTTGCACGACCTTTGGCTCCTCATTTTGTCCTAGGAAGGAATAGGGGTCACCA
AGGTCTTGCTGCTGCCATCGTAAAGCTGTG
■■Homology search results ■■ -
sp_hit_id Q6YYA3
Definition sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica
Align length 84
Score (bit) 103.0
E-value 4.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916579|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C04.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing fac...   103   4e-22
sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing fac...    97   3e-20
sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing fac...    93   6e-19
sp|Q9BXU7|UBP26_HUMAN Ubiquitin carboxyl-terminal hydrolase 26 O...    31   2.9  
sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schiz...    30   5.0  
sp|Q9NWG9|MAGH1_MOUSE Melanoma-associated antigen H1 OS=Mus musc...    30   8.6  
sp|Q2L1B1|FLGI_BORA1 Flagellar P-ring protein OS=Bordetella aviu...    30   8.6  

>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing
           facilitator CRS1, chloroplastic OS=Oryza sativa subsp.
           japonica GN=Os08g0360100 PE=2 SV=1
          Length = 725

 Score =  103 bits (258), Expect = 4e-22
 Identities = 49/84 (58%), Positives = 63/84 (75%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+ L PRF +W    P+P+DADLLP V+P+++ PFR  P G+RP ++D ELT LR+ AR
Sbjct: 308 LLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHAR 367

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HFVLGRN   QGLAAAI+KL
Sbjct: 368 PLPTHFVLGRNTKLQGLAAAILKL 391


>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing
           facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1
           SV=1
          Length = 715

 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 47/84 (55%), Positives = 60/84 (71%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+ L PRF +W    P+P+DADLLP  +P  + P+RL P G+RP ++D ELT LR+LAR
Sbjct: 306 LLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLAR 365

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
            L  HF LGRN   QGLAAAI+KL
Sbjct: 366 LLPTHFALGRNTRLQGLAAAILKL 389


>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing
           facilitator CRS1, chloroplastic OS=Arabidopsis thaliana
           GN=At5g16180 PE=3 SV=1
          Length = 718

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+GL PR+ +W    P P+DADLLP V+  Y  P R  P   R +++D ELT LR +A+
Sbjct: 313 LLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQ 372

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HFVLGRN G QGLA+AIVKL
Sbjct: 373 PLPFHFVLGRNYGLQGLASAIVKL 396


>sp|Q9BXU7|UBP26_HUMAN Ubiquitin carboxyl-terminal hydrolase 26
           OS=Homo sapiens GN=USP26 PE=2 SV=1
          Length = 913

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 154 LNMTFSIFLQAKEFVTQFFLSNCGRQRGFSLHTHSTLPRIQVLHL 20
           +  TF +F  A+E   ++  + C  +    +H+ S LPRI ++HL
Sbjct: 479 IQSTFDLFFGAEEL--EYKCAKCEHKTSVGVHSFSRLPRILIVHL 521


>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8
           OS=Schizosaccharomyces pombe GN=rec8 PE=1 SV=2
          Length = 561

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 334 RKQISVYRDWQ*TCPILKPWIQSFK 260
           +K+++ + DW+   P+LKPWI+  K
Sbjct: 335 KKELNKFFDWESFHPLLKPWIEKLK 359


>sp|Q9NWG9|MAGH1_MOUSE Melanoma-associated antigen H1 OS=Mus
           musculus GN=Mageh1 PE=2 SV=1
          Length = 218

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 26  ENLNSRQSRVSVQAETPLPATIAQEELGNKFFGLQEDGKGHVESESGRVSMTAMPSLSTD 205
           EN N+R+S+ S  +ETP+ A++A         G +ED    +E  S   S  +  +L   
Sbjct: 18  ENRNNRKSQASEASETPMAASVAPSTPEEYLSGPEED-TSTLEKASSTPSEASSTALVQK 76

Query: 206 PYNK 217
           P  +
Sbjct: 77  PVTR 80


>sp|Q2L1B1|FLGI_BORA1 Flagellar P-ring protein OS=Bordetella avium
           (strain 197N) GN=flgI PE=3 SV=1
          Length = 376

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +2

Query: 5   GGSQKEVENLNSRQSRVSVQAETPLPATIAQE-----ELGNKFFGLQEDGKGHVESESG 166
           GGS  ++  LN  +       E P+P + AQ+     E+ N  FG  ++    +  + G
Sbjct: 162 GGSSVQINTLNGGRISAGAIVERPVPTSFAQDGLVYLEMNNSDFGTTQNAANAINRQFG 220
tr_hit_id Q9SGI0
Definition tr|Q9SGI0|Q9SGI0_ARATH T13O15.1 protein OS=Arabidopsis thaliana
Align length 84
Score (bit) 117.0
E-value 2.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916579|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C04.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SGI0|Q9SGI0_ARATH T13O15.1 protein OS=Arabidopsis thaliana ...   117   2e-25
tr|Q8L7C2|Q8L7C2_ARATH Putative uncharacterized protein At3g0137...   117   2e-25
tr|A7PMG5|A7PMG5_VITVI Chromosome chr14 scaffold_21, whole genom...   117   4e-25
tr|A5BLQ8|A5BLQ8_VITVI Putative uncharacterized protein OS=Vitis...   117   4e-25
tr|Q6K4E4|Q6K4E4_ORYSJ Os09g0363100 protein OS=Oryza sativa subs...   112   8e-24
tr|Q01JD7|Q01JD7_ORYSA OSIGBa0130P02.2 protein OS=Oryza sativa G...   111   2e-23
tr|Q2R1U8|Q2R1U8_ORYSJ CRS1/YhbY domain containing protein, expr...   111   2e-23
tr|Q0IRW0|Q0IRW0_ORYSJ Os11g0592400 protein OS=Oryza sativa subs...   111   2e-23
tr|A3CCX9|A3CCX9_ORYSJ Putative uncharacterized protein OS=Oryza...   111   2e-23
tr|A2XVM7|A2XVM7_ORYSI Putative uncharacterized protein OS=Oryza...   111   2e-23
tr|A5BQ84|A5BQ84_VITVI Putative uncharacterized protein OS=Vitis...   110   3e-23
tr|A9SE98|A9SE98_PHYPA Predicted protein (Fragment) OS=Physcomit...   110   4e-23
tr|A7XN92|A7XN92_MAIZE CRM family member 3 OS=Zea mays PE=2 SV=1      110   4e-23
tr|A7PGU4|A7PGU4_VITVI Chromosome chr17 scaffold_16, whole genom...   109   7e-23
tr|O23307|O23307_ARATH Putative uncharacterized protein dl3295c ...   109   9e-23
tr|Q6L4G1|Q6L4G1_ORYSJ Os05g0551900 protein OS=Oryza sativa subs...   108   1e-22
tr|A9SZH0|A9SZH0_PHYPA Predicted protein OS=Physcomitrella paten...   108   1e-22
tr|A2Y778|A2Y778_ORYSI Putative uncharacterized protein OS=Oryza...   108   1e-22
tr|Q9LS85|Q9LS85_ARATH Emb|CAB10230.1 OS=Arabidopsis thaliana PE...   106   7e-22
tr|Q0WV92|Q0WV92_ARATH Putative uncharacterized protein At3g2307...   106   7e-22
tr|A7UDM4|A7UDM4_MAIZE CFM2 alternative polyadenylation form 2 (...   105   1e-21
tr|A7UDM3|A7UDM3_MAIZE CFM2 alternative polyadenylation form 1 (...   105   1e-21
tr|A7UDM2|A7UDM2_MAIZE CFM2 (Fragment) OS=Zea mays GN=CFM2 PE=2 ...   105   1e-21
tr|A7PE67|A7PE67_VITVI Chromosome chr11 scaffold_13, whole genom...   105   1e-21
tr|Q9SU76|Q9SU76_ARATH Putative uncharacterized protein T16L4.26...   104   3e-21
tr|Q9LS51|Q9LS51_ARATH Gb|AAF24608.1 (Putative uncharacterized p...   104   3e-21
tr|A7PAT8|A7PAT8_VITVI Chromosome chr14 scaffold_9, whole genome...   104   3e-21
tr|B8BA17|B8BA17_ORYSI Putative uncharacterized protein OS=Oryza...   103   4e-21
tr|A7NX06|A7NX06_VITVI Chromosome chr5 scaffold_2, whole genome ...   103   4e-21
tr|A3BSD9|A3BSD9_ORYSJ Putative uncharacterized protein OS=Oryza...   103   4e-21

>tr|Q9SGI0|Q9SGI0_ARATH T13O15.1 protein OS=Arabidopsis thaliana
           GN=T13O15.1 PE=4 SV=1
          Length = 1020

 Score =  117 bits (294), Expect = 2e-25
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +LEGL PRF +W    P+P+D DLLP+V+P+YR PFRL+PYG+ P+++D E+T +RRL R
Sbjct: 332 LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGR 391

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HF LGRNR  QGLA AIVKL
Sbjct: 392 PLPCHFALGRNRNLQGLAVAIVKL 415


>tr|Q8L7C2|Q8L7C2_ARATH Putative uncharacterized protein At3g01370
           (At3g01370) OS=Arabidopsis thaliana GN=At3g01370 PE=2
           SV=1
          Length = 1011

 Score =  117 bits (294), Expect = 2e-25
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +LEGL PRF +W    P+P+D DLLP+V+P+YR PFRL+PYG+ P+++D E+T +RRL R
Sbjct: 332 LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGR 391

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HF LGRNR  QGLA AIVKL
Sbjct: 392 PLPCHFALGRNRNLQGLAVAIVKL 415


>tr|A7PMG5|A7PMG5_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020812001
           PE=4 SV=1
          Length = 1027

 Score =  117 bits (292), Expect = 4e-25
 Identities = 52/84 (61%), Positives = 69/84 (82%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+GL PRF +W G  P+PIDADLLP+V+P YR PFRL+PYG++P++++ E+T LRRL R
Sbjct: 342 LLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGR 401

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HF LGRNR  QGLAA+++KL
Sbjct: 402 PLPCHFALGRNRKLQGLAASMIKL 425


>tr|A5BLQ8|A5BLQ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006146 PE=4 SV=1
          Length = 1399

 Score =  117 bits (292), Expect = 4e-25
 Identities = 52/84 (61%), Positives = 69/84 (82%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+GL PRF +W G  P+PIDADLLP+V+P YR PFRL+PYG++P++++ E+T LRRL R
Sbjct: 551 LLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGR 610

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  HF LGRNR  QGLAA+++KL
Sbjct: 611 PLPCHFALGRNRKLQGLAASMIKL 634


>tr|Q6K4E4|Q6K4E4_ORYSJ Os09g0363100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1506_A04.16 PE=4 SV=1
          Length = 947

 Score =  112 bits (281), Expect = 8e-24
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = +2

Query: 260 LEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLARP 439
           L+ L PR+++W+G  P+P+DADLLP V+P Y+ PFRL+PY ++  + + E+T LRRLAR 
Sbjct: 493 LDQLGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQ 552

Query: 440 LAPHFVLGRNRGHQGLAAAIVKL 508
            APHF LGRNR HQGLA AIVKL
Sbjct: 553 TAPHFALGRNREHQGLATAIVKL 575


>tr|Q01JD7|Q01JD7_ORYSA OSIGBa0130P02.2 protein OS=Oryza sativa
           GN=OSIGBa0130P02.2 PE=4 SV=1
          Length = 1048

 Score =  111 bits (278), Expect = 2e-23
 Identities = 49/84 (58%), Positives = 67/84 (79%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+GL PRF +W G  P+P+DADLLP+++P YR PFRL+P G+ PR++D E+T LRRLAR
Sbjct: 369 LLDGLGPRFSDWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLAR 428

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
           PL  H+ LGR+   QGLAA+++KL
Sbjct: 429 PLPYHYALGRSSNLQGLAASMIKL 452


>tr|Q2R1U8|Q2R1U8_ORYSJ CRS1/YhbY domain containing protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g37990 PE=4 SV=1
          Length = 886

 Score =  111 bits (277), Expect = 2e-23
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+ L PR+++W    P P+DADLLP+ +P Y+PPFR++PYG+RP +S  + TNLRRLAR
Sbjct: 334 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 393

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
            L PHF LGR+R  QGLAAA+VKL
Sbjct: 394 GLPPHFALGRSRQLQGLAAAMVKL 417


>tr|Q0IRW0|Q0IRW0_ORYSJ Os11g0592400 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0592400 PE=4 SV=1
          Length = 861

 Score =  111 bits (277), Expect = 2e-23
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+ L PR+++W    P P+DADLLP+ +P Y+PPFR++PYG+RP +S  + TNLRRLAR
Sbjct: 334 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 393

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
            L PHF LGR+R  QGLAAA+VKL
Sbjct: 394 GLPPHFALGRSRQLQGLAAAMVKL 417


>tr|A3CCX9|A3CCX9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033151 PE=4 SV=1
          Length = 705

 Score =  111 bits (277), Expect = 2e-23
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 ILEGLDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLAR 436
           +L+ L PR+++W    P P+DADLLP+ +P Y+PPFR++PYG+RP +S  + TNLRRLAR
Sbjct: 319 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 378

Query: 437 PLAPHFVLGRNRGHQGLAAAIVKL 508
            L PHF LGR+R  QGLAAA+VKL
Sbjct: 379 GLPPHFALGRSRQLQGLAAAMVKL 402


>tr|A2XVM7|A2XVM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16687 PE=4 SV=1
          Length = 893

 Score =  111 bits (277), Expect = 2e-23
 Identities = 49/80 (61%), Positives = 63/80 (78%)
 Frame = +2

Query: 269 LDPRFENWTGLLPVPIDADLLPSVIPNYRPPFRLMPYGIRPRISDSELTNLRRLARPLAP 448
           L PR+++W+G  P+P+DADLLP V+P Y+ PFRL+PY ++  + + E+T LRRLAR  AP
Sbjct: 441 LGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAP 500

Query: 449 HFVLGRNRGHQGLAAAIVKL 508
           HF LGRNR HQGLA AIVKL
Sbjct: 501 HFALGRNREHQGLATAIVKL 520