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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916581
Clone id YMU001_000089_C06
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACGCAATGTGTGACAATGTCCAATATAGTAAAAAATACAGAGCTAATGACAAAAGCCCA
AGTTATACATTCTGGCTCATCAAGTCTGGCTCACCGCGCACAGTTGGGCTATAGCGTACA
TCAGTGCAGGTGCAGACAAAATCTGGCAGCCGCCCAAGTAAGGTTTTCGGAACAAAAGAT
CTTACAAGGGCAATAATGCTGCCCGTATGCACTCTCAAAGATTTGAAGCTATGGAAAATA
AAGCACAGTAGCCATATCACGCTACTGTCATCCGCCTATGGAATGTTAGGCATTACTCTC
CTGAGTGACCCAATAATCTTCGATTCTTCCTTTCCCTCGTCGAATGCGACATAATTCTTC
TCTTCATCATATATGTGACATACTGTCATAATGGTTTTCATTAATCTCCAATTCCACTGA
GCTTCATTAAAATATTTTCTCCAGTGTTGCCGCAAAGATTCATTAGCA
■■Homology search results ■■ -
sp_hit_id P46312
Definition sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana
Align length 62
Score (bit) 84.3
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916581|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C06.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast...    84   2e-16
sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast...    81   2e-15
sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast...    74   3e-13
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast...    65   1e-10
sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. ...    44   5e-04
sp|P90837|SRE32_CAEEL Serpentine receptor class epsilon-32 OS=Ca...    31   2.3  
sp|Q5HCG2|Y015_EHRRW UPF0078 membrane protein Erum0150/ERWE_CDS_...    30   6.8  
sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7 O...    29   8.9  
sp|P32375|ALN_YEAST Allantoinase OS=Saccharomyces cerevisiae GN=...    29   9.1  

>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
           OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
          Length = 448

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A+ES++++W KY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+ I  L++ M
Sbjct: 384 AHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAM 443

Query: 290 PN 285
           PN
Sbjct: 444 PN 445


>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic
           OS=Brassica napus PE=2 SV=1
          Length = 443

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 35/62 (56%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++S++++W KY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+ I  L++ M
Sbjct: 379 AHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAM 438

Query: 290 PN 285
           P+
Sbjct: 439 PD 440


>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic
           OS=Spinacia oleracea GN=FAD6 PE=1 SV=1
          Length = 447

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 33/62 (53%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEG-KEESKIIGSLRRVM 291
           AN+SL ++W +Y N+ + NWRLM+TIMT CHIYD++ NYV+F++   EES+ I   +RVM
Sbjct: 384 ANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVM 443

Query: 290 PN 285
           P+
Sbjct: 444 PD 445


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
           OS=Glycine max PE=2 SV=1
          Length = 424

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 25/38 (65%), Positives = 34/38 (89%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKN 354
           A++SL+++W +Y NEA WNWRLMKTIMTVC +YD+EK+
Sbjct: 378 AHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKS 415


>sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp.
           (strain PCC 6803) GN=desA PE=3 SV=1
          Length = 351

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEGKE 327
           A+ SL+++W  +  E  +NW+LM+ I   CH+YD E  Y  F   K+
Sbjct: 304 AHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSLKK 350


>sp|P90837|SRE32_CAEEL Serpentine receptor class epsilon-32
           OS=Caenorhabditis elegans GN=sre-32 PE=2 SV=3
          Length = 361

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 446 HWRKYFNEAQWNWRLMKTIMT 384
           HWRK+F  A + WRL+K+  T
Sbjct: 308 HWRKHFQNACFTWRLVKSAWT 328


>sp|Q5HCG2|Y015_EHRRW UPF0078 membrane protein
           Erum0150/ERWE_CDS_00020 OS=Ehrlichia ruminantium (strain
           Welgevonden) GN=Erum0150 PE=3 SV=1
          Length = 195

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = -2

Query: 353 YVAFDEGKEESKIIGSLRRVMPNIP*ADDSSVIWLLCFIFHSFKSLRVHTGSIIALVRSF 174
           Y+ F  GK  + ++GSL  +   +  A      W++CF+   + SL     ++IAL+   
Sbjct: 97  YLFFKGGKGVAPLLGSLIFIDYRV--AVCFLTFWIICFLLCKYASLSSIVSTLIALL--- 151

Query: 173 VPKTLLGRLPDFVCTC 126
                      F+CTC
Sbjct: 152 -----------FICTC 156


>sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7
           OS=Mus musculus GN=Cdca7 PE=1 SV=1
          Length = 382

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 11  VTMSNIVKNTELMTKAQV--IHSGSSSLAHRAQLGYSVHQCRCRQNLAAAQVRFSEQKIL 184
           +T+ +I++  E +T+ ++  I S S    +   LG + HQCR +        R  +   +
Sbjct: 244 MTLPHIIRPVEEVTEEEIRNICSNSREKIYNRSLGSTCHQCRQKTTDTKTNCRNPDCWGI 303

Query: 185 QGQ*CCP 205
           +GQ C P
Sbjct: 304 RGQFCGP 310


>sp|P32375|ALN_YEAST Allantoinase OS=Saccharomyces cerevisiae
           GN=DAL1 PE=2 SV=2
          Length = 460

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 208 CTLKDLKLWKIKHSSHITLLSSAYGMLGITLLSDPIIFD--SSFPSSNAT*FFSS 366
           C+L D+  W  K++SH   LS   G +     +D ++FD  S    SN++ +F +
Sbjct: 361 CSLVDIVTWCCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKHKISNSSVYFKN 415
tr_hit_id A9NV95
Definition tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 63
Score (bit) 102.0
E-value 1.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916581|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C06.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea...   102   1e-20
tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Popul...    91   2e-17
tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase...    89   8e-17
tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Ol...    87   4e-16
tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase OS=...    87   4e-16
tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, who...    87   4e-16
tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella paten...    86   9e-16
tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplas...    83   8e-15
tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase, c...    82   1e-14
tr|Q0J5E5|Q0J5E5_ORYSJ Os08g0440900 protein (Fragment) OS=Oryza ...    82   1e-14
tr|B8BB37|B8BB37_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|B7E505|B7E505_ORYSJ cDNA clone:001-011-F10, full insert seque...    82   1e-14
tr|A3BTJ3|A3BTJ3_ORYSJ Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|B6TGK8|B6TGK8_MAIZE Putative uncharacterized protein OS=Zea m...    81   3e-14
tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4...    79   9e-14
tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2...    78   2e-13
tr|Q9ZSV6|Q9ZSV6_ACEAT Putative chloroplast desaturase (Fragment...    68   2e-10
tr|O48663|O48663_CHLRE Chloroplast w6 desaturase (Omega-6-FAD, c...    67   3e-10
tr|A3QQP5|A3QQP5_MESVI Chloroplast omega-6 fatty acid desaturase...    67   4e-10
tr|B8HXM7|B8HXM7_9CHRO Fatty acid desaturase OS=Cyanothece sp. P...    53   9e-06
tr|Q55231|Q55231_SYNP2 Delta 12 desaturase OS=Synechococcus sp. ...    51   3e-05
tr|B0C0E1|B0C0E1_ACAM1 Fatty acid desaturase (Delta(12) desatura...    51   3e-05
tr|B1WXI5|B1WXI5_CYAA5 Fatty acid desaturase OS=Cyanothece (stra...    49   1e-04
tr|Q9SBU4|Q9SBU4_CHLSW Chloroplast w6 desaturase OS=Chlamydomona...    49   1e-04
tr|B4BY53|B4BY53_9CHRO Fatty acid desaturase OS=Cyanothece sp. P...    47   4e-04
tr|A3IZH1|A3IZH1_9CHRO Fatty acid desaturase OS=Cyanothece sp. C...    47   4e-04
tr|A8YGG1|A8YGG1_MICAE Similar to tr|Q55230|Q55230 OS=Microcysti...    47   5e-04
tr|B0JYE1|B0JYE1_MICAN Delta 12 acyl-lipid desaturase OS=Microcy...    46   8e-04
tr|B7JUV3|B7JUV3_SYNP8 Fatty acid desaturase OS=Synechococcus sp...    46   8e-04
tr|B5VW63|B5VW63_SPIMA Fatty acid desaturase OS=Arthrospira maxi...    45   0.001

>tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 460

 Score =  102 bits (254), Expect = 1e-20
 Identities = 47/63 (74%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEG-KEESKIIGSLRRVM 291
           A +SLR++W KY NEA+WNWRLMKTIMT CHIYDEE NYVAFDE   EESK+IG +RR+M
Sbjct: 397 AQDSLRKNWGKYLNEAKWNWRLMKTIMTKCHIYDEENNYVAFDEDLPEESKVIGFVRRMM 456

Query: 290 PNI 282
           PNI
Sbjct: 457 PNI 459


>tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 444

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 39/62 (62%), Positives = 54/62 (87%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++SL+++W KY NEA+WNWRLMKTIMT+CH+YD+E+NYVAFD+   EES+ +  L+RVM
Sbjct: 381 AHKSLQENWGKYLNEAKWNWRLMKTIMTLCHVYDKEENYVAFDQLAPEESQPVAFLKRVM 440

Query: 290 PN 285
           P+
Sbjct: 441 PD 442


>tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase
           OS=Jatropha curcas PE=2 SV=1
          Length = 440

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 38/62 (61%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++S++++W KY NEA WNWRLMKTIMT+CH+YD+E+NY+AFD+   EES+ I  L+RVM
Sbjct: 377 AHKSIQENWGKYINEATWNWRLMKTIMTICHVYDKEQNYIAFDKIAPEESQPIEFLKRVM 436

Query: 290 PN 285
           P+
Sbjct: 437 PD 438


>tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Olea
           europaea subsp. europaea GN=fad6 PE=2 SV=1
          Length = 443

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 37/62 (59%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++SL+++W KY NEA WNWRLMKTI+T+CH+YD+E+NYVAFDE   ++S+ I  L++VM
Sbjct: 380 AHKSLQENWGKYMNEATWNWRLMKTILTICHVYDKEQNYVAFDELAPKDSQPITFLKKVM 439

Query: 290 PN 285
           P+
Sbjct: 440 PD 441


>tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase
           OS=Olea europaea GN=FAD6 PE=2 SV=1
          Length = 443

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 37/62 (59%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++SL+++W KY NEA WNWRLMKTI+T+CH+YD+E+NYVAFDE   ++S+ I  L++VM
Sbjct: 380 AHKSLQENWGKYMNEATWNWRLMKTILTICHVYDKEQNYVAFDELAPKDSQPITFLKKVM 439

Query: 290 PN 285
           P+
Sbjct: 440 PD 441


>tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004305001 PE=4 SV=1
          Length = 301

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 38/62 (61%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++SL+++W KY NEA+WNWRLMKTI+T+CH+Y++E+NYVAFD    EES+ I  LR+VM
Sbjct: 238 AHQSLQENWGKYLNEARWNWRLMKTILTMCHVYNKEQNYVAFDNLAPEESQPIVFLRKVM 297

Query: 290 PN 285
           P+
Sbjct: 298 PD 299


>tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222981 PE=4 SV=1
          Length = 454

 Score = 85.9 bits (211), Expect = 9e-16
 Identities = 36/62 (58%), Positives = 51/62 (82%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDEGKEESKIIGSLRRVMP 288
           A+ESL ++W K+ N A++NWRLMK IMT CH YD EKNY +FD G+++S +IG+LR+VMP
Sbjct: 392 AHESLVENWGKHLNIAKFNWRLMKVIMTECHYYDPEKNYTSFDNGEDKSPVIGTLRKVMP 451

Query: 287 NI 282
           ++
Sbjct: 452 DM 453


>tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplast
           delta-12 fatty acid desaturase) OS=Descurainia sophia
           GN=FAD6 PE=2 SV=1
          Length = 447

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 36/62 (58%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A++S++++W KY N A WNWRLMKTIMTVCH+YD+E+NY+ FD    EES+ I  L++ M
Sbjct: 383 AHKSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAM 442

Query: 290 PN 285
           PN
Sbjct: 443 PN 444


>tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0528B09.19 PE=4 SV=1
          Length = 414

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/62 (58%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A +S++Q+W KY NEA WNWRLMKTI+T CH+YD+++ YV FDE   EES+ I  L++VM
Sbjct: 351 AYDSIKQNWGKYINEASWNWRLMKTILTKCHVYDKDRYYVPFDEVAPEESQPIKFLKKVM 410

Query: 290 PN 285
           P+
Sbjct: 411 PD 412


>tr|Q0J5E5|Q0J5E5_ORYSJ Os08g0440900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0440900 PE=4 SV=1
          Length = 184

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/62 (58%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -2

Query: 467 ANESLRQHWRKYFNEAQWNWRLMKTIMTVCHIYDEEKNYVAFDE-GKEESKIIGSLRRVM 291
           A +S++Q+W KY NEA WNWRLMKTI+T CH+YD+++ YV FDE   EES+ I  L++VM
Sbjct: 121 AYDSIKQNWGKYINEASWNWRLMKTILTKCHVYDKDRYYVPFDEVAPEESQPIKFLKKVM 180

Query: 290 PN 285
           P+
Sbjct: 181 PD 182