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NBDC - LSDB Archive
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BP916582
Clone id YMU001_000089_C07
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGGATAGTGAGGAGGATTCTCCAAGTTAAATGTGTGAGATGCCAATGCATACCAATTAG
GCTGAATCCTCTGCCTTTAGAGGCTCCCATTGACAAGGTGCTGTGAGGACCCAAGGAATA
TTTTGGCCAATAGTAGGATTCGGGTAGCACAGACACTGCTCAAACCAGAGCTTATCAAGT
GGTGCAGGGGAAAAGGACAGTACAAGGGGATTGCCTTAATATCTGCATTTGCTTCCAGCA
TGCAGGAGGAACTCCTTCAGCTTCATTATCATTTATTCTTTTGTCCAAGTCCCACAACAA
TATCAACCAGTGGAGTTGGGGTGCAGTTGCTTTTCTGTAAGAACATACAAGCAGCACCCT
ATTATAGACGAGGAGCAACTGCTGCTCACAAAATTTTGGTAGAGTGAGTCGATGGTCCAT
CTATCAGATTTTCAGTAAAATCTTGTTCTGGTAGATACATTCCATGTAATTTATCAACAT
GTTTATGTACAAGTTCAGCAGCCCTATCATTTGGAGCCTCCAAGAGTGAGGTGTT
■■Homology search results ■■ -
sp_hit_id Q97T80
Definition sp|Q97T80|ZMPC_STRPN Zinc metalloprotease zmpC OS=Streptococcus pneumoniae
Align length 34
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916582|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C07.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q97T80|ZMPC_STRPN Zinc metalloprotease zmpC OS=Streptococcus ...    31   3.3  
sp|Q8GVE3|FLRT_CITMA Flavanone 7-O-glucoside 2''-O-beta-L-rhamno...    30   5.6  
sp|Q50863|RFBB_MYXXA O-antigen export system ATP-binding protein...    30   7.3  
sp|Q60612|AA1R_MOUSE Adenosine receptor A1 OS=Mus musculus GN=Ad...    30   7.3  
sp|Q6CVK3|SPT6_KLULA Transcription elongation factor SPT6 OS=Klu...    30   9.5  
sp|P25099|AA1R_RAT Adenosine receptor A1 OS=Rattus norvegicus GN...    30   9.5  
sp|O07021|YVFW_BACSU Uncharacterized electron transport protein ...    30   9.7  
sp|Q2TZH4|SET9_ASPOR Histone-lysine N-methyltransferase set9 OS=...    30   9.7  

>sp|Q97T80|ZMPC_STRPN Zinc metalloprotease zmpC OS=Streptococcus
           pneumoniae GN=zmpC PE=3 SV=1
          Length = 1856

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -1

Query: 529 SLLEAPNDRAAELVHKHVDKLHGMYLPEQDFTEN 428
           SL EAP D A   V    D+   MYLP +  TEN
Sbjct: 621 SLSEAPTDTAKYFVKVKSDRFKEMYLPVKSITEN 654


>sp|Q8GVE3|FLRT_CITMA Flavanone 7-O-glucoside
           2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima
           GN=C12RT1 PE=1 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 240 MQEELLQLHYHLFFCPSPTTISTSGVGVQLLFCKNIQ 350
           + ++L Q ++H++FC +P  + + G  V+  F  +IQ
Sbjct: 28  LAKKLSQKNFHIYFCSTPNNLQSFGRNVEKNFSSSIQ 64


>sp|Q50863|RFBB_MYXXA O-antigen export system ATP-binding protein
           rfbB OS=Myxococcus xanthus GN=rfbB PE=3 SV=1
          Length = 437

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 138 IRVAQTLLKPELIKWCRGKGQYKGIALISA 227
           IR   T  K EL++W RGK Q +  +LI+A
Sbjct: 22  IRGEYTTFKSELLRWLRGKRQSRDASLITA 51


>sp|Q60612|AA1R_MOUSE Adenosine receptor A1 OS=Mus musculus
           GN=Adora1 PE=2 SV=3
          Length = 326

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -3

Query: 350 LYVLTEKQLHPNSTG*YCCGTWTKE*MIMKLKEFLLHAGSKCRY*GNPLVLSFS----PA 183
           L+ L+   LH  +     C T  K  +++ +  FL H  S      NP+V +F       
Sbjct: 242 LFALSWLPLHILNCITLFCPTCQKPSILIYIAIFLTHGNSAM----NPIVYAFRIHKFRV 297

Query: 182 PLDKLWFEQCLCYPNPTIGQNIP 114
              K+W +   C P P I ++IP
Sbjct: 298 TFLKIWNDHFRCQPKPPIEEDIP 320


>sp|Q6CVK3|SPT6_KLULA Transcription elongation factor SPT6
            OS=Kluyveromyces lactis GN=SPT6 PE=3 SV=1
          Length = 1460

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105  EDPRNILANSRIRVAQTL-LKPELIKWCRGKGQYKGIALISAFASSMQEELLQLHYH 272
            ED   +   S  R AQ    KP L+K+C   G+Y    L+  +A+   EELL L  H
Sbjct: 850  EDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRYIHSPLLE-YANLTNEELLSLSIH 905


>sp|P25099|AA1R_RAT Adenosine receptor A1 OS=Rattus norvegicus
           GN=Adora1 PE=2 SV=2
          Length = 326

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -3

Query: 350 LYVLTEKQLHPNSTG*YCCGTWTKE*MIMKLKEFLLHAGSKCRY*GNPLVLSFS----PA 183
           L+ L+   LH  +     C T  K  +++ +  FL H  S      NP+V +F       
Sbjct: 242 LFALSWLPLHILNCITLFCPTCQKPSILIYIAIFLTHGNSAM----NPIVYAFRIHKFRV 297

Query: 182 PLDKLWFEQCLCYPNPTIGQNIP 114
              K+W +   C P P I +++P
Sbjct: 298 TFLKIWNDHFRCQPKPPIDEDLP 320


>sp|O07021|YVFW_BACSU Uncharacterized electron transport protein
           yvfW OS=Bacillus subtilis GN=yvfW PE=4 SV=2
          Length = 479

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 77  LEAPIDKVL*GPKEYFGQ**DSGSTDTAQTRAYQVVQGKRTVQGDCLNICICFQHAGGTP 256
           LE  +D    GP+E+     D+G ++   T    V+Q  R     C+N+C  ++H GG  
Sbjct: 280 LEGEVD----GPEEFHLVIVDNGRSNILGTEFQSVLQCIRCAA--CINVCPVYRHVGGHS 333

Query: 257 SASL 268
             S+
Sbjct: 334 YGSI 337


>sp|Q2TZH4|SET9_ASPOR Histone-lysine N-methyltransferase set9
           OS=Aspergillus oryzae GN=set9 PE=3 SV=1
          Length = 625

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 526 LLEAPNDRAAELVHKHVDKLHGMYLPEQDF 437
           L + PNDR  E   +H+ K   MYLP+  F
Sbjct: 93  LAKLPNDREKEWFRRHLRKYIQMYLPDSPF 122
tr_hit_id B5SEL5
Definition tr|B5SEL5|B5SEL5_RALSO D-amino acid oxidase flavoprotein OS=Ralstonia solanacearum IPO1609
Align length 61
Score (bit) 35.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916582|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C07.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5SEL5|B5SEL5_RALSO D-amino acid oxidase flavoprotein OS=Rals...    35   2.4  
tr|A3RPU8|A3RPU8_RALSO Glycine oxidase OS=Ralstonia solanacearum...    35   2.4  
tr|B0RPR8|B0RPR8_XANCB Putative uncharacterized protein OS=Xanth...    35   3.2  
tr|A0D714|A0D714_PARTE Chromosome undetermined scaffold_4, whole...    35   3.2  
tr|A9DEM5|A9DEM5_9GAMM Sensor protein OS=Shewanella benthica KT9...    33   7.0  
tr|A0DJV3|A0DJV3_PARTE Chromosome undetermined scaffold_53, whol...    33   7.2  

>tr|B5SEL5|B5SEL5_RALSO D-amino acid oxidase flavoprotein
           OS=Ralstonia solanacearum IPO1609 GN=RSIPO_00163 PE=4
           SV=1
          Length = 345

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +3

Query: 189 GKGQYKGIALISAFASSMQEELLQLHYHLFFC-PSPTTISTSGVGVQL-LFCKNIQAAPY 362
           G+GQ    AL+ A A+ ++   +QLH++     P P  ++ +G+G +L L C+ + A P 
Sbjct: 122 GEGQLDNRALLDALATELEALGVQLHWNTAIADPRPDALAAAGLGARLVLDCRGLGAKPQ 181

Query: 363 Y 365
           +
Sbjct: 182 W 182


>tr|A3RPU8|A3RPU8_RALSO Glycine oxidase OS=Ralstonia solanacearum
           UW551 GN=RRSL_04360 PE=4 SV=1
          Length = 379

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +3

Query: 189 GKGQYKGIALISAFASSMQEELLQLHYHLFFC-PSPTTISTSGVGVQL-LFCKNIQAAPY 362
           G+GQ    AL+ A A+ ++   +QLH++     P P  ++ +G+G +L L C+ + A P 
Sbjct: 156 GEGQLDNRALLDALATELEALGVQLHWNTAIADPRPDALAAAGLGARLVLDCRGLGAKPQ 215

Query: 363 Y 365
           +
Sbjct: 216 W 216


>tr|B0RPR8|B0RPR8_XANCB Putative uncharacterized protein
           OS=Xanthomonas campestris pv. campestris (strain B100)
           GN=xcc-b100_1105 PE=4 SV=1
          Length = 168

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = -3

Query: 293 GTWTKE*MIMKLKEFLLHAGSKCRY*GNPLVLSFSPAPLDKLWFEQCLCYPNPTIGQ--- 123
           G W +E +     EF LHA +   Y     V +F   PL   WFEQ  C  +   G+   
Sbjct: 87  GAWLREHLGAVRFEFALHADAAALYWQARRVWAFGWLPLPARWFEQVRCREHADEGRYGF 146

Query: 122 ----NIPWV 108
               ++PWV
Sbjct: 147 LVDVHLPWV 155


>tr|A0D714|A0D714_PARTE Chromosome undetermined scaffold_4, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00001872001 PE=4 SV=1
          Length = 352

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 402 LPKFCEQQLLLVYNRVLLVCSYRK----ATAPQLHWLILLWDLDKRINDN 265
           L  FCEQ   L Y+R++ + ++R+      A  L+WL+L +  D  I+DN
Sbjct: 6   LRNFCEQMRALGYHRIISMENFRRPNFELVADILYWLVLKYQPDADISDN 55


>tr|A9DEM5|A9DEM5_9GAMM Sensor protein OS=Shewanella benthica KT99
            GN=KT99_13902 PE=4 SV=1
          Length = 1140

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 26/116 (22%), Positives = 47/116 (40%)
 Frame = +3

Query: 114  RNILANSRIRVAQTLLKPELIKWCRGKGQYKGIALISAFASSMQEELLQLHYHLFFCPSP 293
            R +L N      +      ++  CR +G+Y  I ++       + E+ ++        +P
Sbjct: 896  RRVLQNFLTNAYRYAKGNRVLLGCRHRGEYLEIQVLDTGCGIDESEISEIFKEFKRLDNP 955

Query: 294  TTISTSGVGVQLLFCKNIQAAPYYRRGATAAHKILVE*VDGPSIRFSVKSCSGRYI 461
            T+ S SG+G+ L     I        G    H+I V+ + G    FS+    G+ I
Sbjct: 956  TSKSVSGLGLGLAIADRI--------GRVLEHEIKVDSILGQGSVFSISVPMGKII 1003


>tr|A0DJV3|A0DJV3_PARTE Chromosome undetermined scaffold_53, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00017664001 PE=4 SV=1
          Length = 396

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 402 LPKFCEQQLLLVYNRVLLVCSYRK----ATAPQLHWLILLWDLDKRINDN 265
           L  FCEQ   L Y+R++ + ++R+      A  L+WL L +D +  I+DN
Sbjct: 6   LRNFCEQMRALGYHRIISMENFRRPNFELVADILYWLALKYDPNTDISDN 55