BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916584|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C09.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke...    31   4.5  
sp|A3LRM6|SNU71_PICST U1 small nuclear ribonucleoprotein compone...    30   5.8  
sp|Q45215|VSP8_BORHE Variable small protein 8 OS=Borrelia hermsi...    30   7.6  
sp|Q971C1|SYM_SULTO Methionyl-tRNA synthetase OS=Sulfolobus toko...    30   9.9  
sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN...    30   9.9  

>sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke
           OS=Drosophila melanogaster GN=slo PE=1 SV=3
          Length = 1200

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -3

Query: 458 MVRLWLAV*RFLPPPGFLYVHLLAAWLSSILLFP*AIALLVVPASMEGLAFLFVPASAQV 279
           M+ ++  V  F  PP F+ ++L   W+   L F  A+ L+ VP  ++ L  L   +S ++
Sbjct: 193 MLEMYSFVDYFTIPPSFVSIYLDRTWIG--LRFLRALRLMTVPDILQYLNVLKTSSSIRL 250

Query: 278 QDLCSSFL 255
             L S F+
Sbjct: 251 AQLVSIFI 258


>sp|A3LRM6|SNU71_PICST U1 small nuclear ribonucleoprotein component
           SNU71 OS=Pichia stipitis GN=SNU71 PE=3 SV=2
          Length = 579

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
 Frame = +2

Query: 152 YSEHRI--NDQAAFPRQIREIPTVALIKKIDEVYKTLEKRNKDLELELKLEQTKRQDLPL 325
           YS++ +  ND    P  +RE     +++   +V   +E+ N+  E+EL+ E+TK      
Sbjct: 256 YSKYEVDSNDLIDVPTNMREAIVKDIVRFRSKVL-LIERDNRKKEIELEREKTK------ 308

Query: 326 MRVQRXXXXXXXXXXXXRAKLLRDGHKETQEEAGTSKQPTIDVPS 460
                            R K L  G KET ++     + T D+PS
Sbjct: 309 ----------------DRLKKLFAGLKETNDDINMDSETTKDLPS 337


>sp|Q45215|VSP8_BORHE Variable small protein 8 OS=Borrelia hermsii
           GN=vsp8 PE=3 SV=1
          Length = 218

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 164 RINDQAAFPRQIREIPTVALIKKIDEVYKTLEKRNKDLELELKLEQTK 307
           +I D   F   ++EI T  L+K IDE+ K + K+ K    +L+++  K
Sbjct: 47  KIKDAVEFAASVKEIET--LVKSIDELAKAIGKKIKQNSEDLEVDNGK 92


>sp|Q971C1|SYM_SULTO Methionyl-tRNA synthetase OS=Sulfolobus
           tokodaii GN=metG PE=3 SV=1
          Length = 571

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 128 DVANESL*YSEHRINDQAAFPRQIREIPTVALIKKIDEVYKTLEK 262
           D+A E +  S H+IN+ +   +++ E+    + KK+DE+ K LEK
Sbjct: 521 DLAGELVIKSNHKINEVSVLFKKV-ELNENDINKKLDEIRKNLEK 564


>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster
           GN=tos PE=1 SV=1
          Length = 732

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 200 REIPTVALIKKIDEVYKTLEKRNKDLELELKLEQTKRQDLPLMRV 334
           +E P     KK+D V KTL   N+++E   +LEQ K+ +  L  +
Sbjct: 380 KENPCALFFKKVDFVGKTL---NEEIEANQRLEQAKQTEAELFNM 421

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916584|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_C09.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3YL81|Q3YL81_9EUCA Calcium-activated potassium channel (Frag...    34   5.7  
tr|A0E5C5|A0E5C5_PARTE Chromosome undetermined scaffold_79, whol...    33   9.9  

>tr|Q3YL81|Q3YL81_9EUCA Calcium-activated potassium channel
           (Fragment) OS=Cancer borealis GN=mSlo PE=2 SV=4
          Length = 997

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = -3

Query: 458 MVRLWLAV*RFLPPPGFLYVHLLAAWLSSILLFP*AIALLVVPASMEGLAFLFVPASAQV 279
           M+ ++  V  F  PP F+ ++L   W+   L F  A+ L+ VP  ++ L  L   +S ++
Sbjct: 87  MLEMYSFVDYFTIPPSFVSIYLDRTWIG--LRFLRALRLMSVPDILQYLNVLKTSSSIRL 144

Query: 278 QDLCSSFL 255
             LCS F+
Sbjct: 145 AQLCSIFI 152


>tr|A0E5C5|A0E5C5_PARTE Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00023669001 PE=4 SV=1
          Length = 377

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 17/67 (25%), Positives = 41/67 (61%)
 Frame = +2

Query: 140 ESL*YSEHRINDQAAFPRQIREIPTVALIKKIDEVYKTLEKRNKDLELELKLEQTKRQDL 319
           + L +++ R+ + A+   Q +E   V ++ +IDE+ + +++ NK+ EL+  +E  + +D+
Sbjct: 269 QQLLFTQRRLKELAS-ELQAKEQQLVEVLNQIDEIKQHMQQTNKEDELKEAMEYLELKDI 327

Query: 320 PLMRVQR 340
            + R+ R
Sbjct: 328 EIDRLHR 334