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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916591
Clone id YMU001_000089_D04
Library
Length 352
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGCGACTCAATTGCACTCTCAAGAAAACACTCTTTGCTTACATCGATCCCTTACACCAA
GAATGTGGGAATGAGGTGCTTCCATATGCCGCACATGATTACAATACATTTGTACAGACA
TCCACCAAGGTTAGCCCCTTCAGAGCTCTATACGGCAGATACCCACAATCTCCACTTGAC
CCCAAAACGAACAAGCTGACAGCCACCAAAGTTGATGCAGTGGATTGGCTCGCATACCTC
AACANCAACCTCCCGCTCCTCCGTAGAGCCATCTCCATCAACCCATCTGAAGCCAAGGGC
TCAACAAATCATTGCTCCATCGTTGGATTTGCCCATACACAGTGCTACAAAA
■■Homology search results ■■ -
sp_hit_id Q84JU6
Definition sp|Q84JU6|HOS1_ARATH E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana
Align length 60
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916591|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D04.
         (352 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84JU6|HOS1_ARATH E3 ubiquitin-protein ligase HOS1 OS=Arabido...    30   4.8  
sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protei...    29   8.2  

>sp|Q84JU6|HOS1_ARATH E3 ubiquitin-protein ligase HOS1
           OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1
          Length = 927

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 133 SPFRALYGRYPQSPLDPKTNKLTATKVDAVDWLAYLNXNLPLLRRAISINPSEAKGSTNH 312
           +PF+ L      S L  K  + ++ +V+ VD     N + P LRR  + NP   K S+NH
Sbjct: 780 TPFKDLNRARGNSQLQGKRTEESSPEVN-VDRYIENNMSSPYLRRITANNPVTVKSSSNH 838


>sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C
            OS=Mus musculus GN=Vps13c PE=2 SV=2
          Length = 3748

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 38   LTSIPYTKNVGMRCFHMP 91
            +T+  Y +N+ MRCFH P
Sbjct: 1466 MTAAAYLRNISMRCFHFP 1483
tr_hit_id Q75J00
Definition tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica
Align length 60
Score (bit) 43.9
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916591|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D04.
         (352 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gy...    44   0.004
tr|Q25AL5|Q25AL5_ORYSA H0102C09.1 protein OS=Oryza sativa GN=H01...    44   0.005
tr|Q6IFU0|Q6IFU0_SCHMA Pol polyprotein OS=Schistosoma mansoni PE...    44   0.005
tr|Q6WAY3|Q6WAY3_PEA Gag/pol polyprotein OS=Pisum sativum PE=4 SV=1    43   0.007
tr|Q6UUS1|Q6UUS1_ORYSJ Putative polyprotein OS=Oryza sativa subs...    43   0.007
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1        43   0.009
tr|B7ZFS7|B7ZFS7_9METZ Polyprotein OS=Lubomirskia baicalensis PE...    43   0.009
tr|Q7XE62|Q7XE62_ORYSJ Retrotransposon protein, putative, Ty3-gy...    42   0.012
tr|Q6MWG4|Q6MWG4_ORYSJ B1160F02.12 protein OS=Oryza sativa subsp...    42   0.012
tr|Q2QSP0|Q2QSP0_ORYSJ Retrotransposon protein, putative, Ty3-gy...    42   0.015
tr|Q1S5K2|Q1S5K2_MEDTR Probable integrase-common tobacco-related...    42   0.015
tr|A5B7W0|A5B7W0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|B7PEC0|B7PEC0_IXOSC Polyprotein of retroviral origin, putativ...    42   0.020
tr|Q8W1D1|Q8W1D1_MAIZE Gag-pol OS=Zea mays PE=4 SV=1                   41   0.026
tr|Q8S6J3|Q8S6J3_ORYSA Putative retroelement OS=Oryza sativa GN=...    41   0.026
tr|Q8LMI0|Q8LMI0_ORYSJ Putative retroelement (Retrotransposon pr...    41   0.026
tr|Q7XK65|Q7XK65_ORYSJ OSJNBa0028M15.22 protein OS=Oryza sativa ...    41   0.026
tr|Q8UUM8|Q8UUM8_ORYLA LReO_3 protein OS=Oryzias latipes GN=LReO...    41   0.034
tr|Q8S6X0|Q8S6X0_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    41   0.034
tr|Q33A65|Q33A65_ORYSJ Retrotransposon protein, putative, Ty3-gy...    41   0.034
tr|A8NT08|A8NT08_COPC7 Putative uncharacterized protein OS=Copri...    41   0.034
tr|A6SJA6|A6SJA6_BOTFB Putative uncharacterized protein OS=Botry...    41   0.034
tr|Q9AYC0|Q9AYC0_ORYSA Polyprotein OS=Oryza sativa GN=OSJNBa0094...    40   0.044
tr|Q9AYB6|Q9AYB6_ORYSA Polyprotein OS=Oryza sativa GN=OSJNBa0094...    40   0.044
tr|Q94I04|Q94I04_ORYSA Putative retroelement OS=Oryza sativa GN=...    40   0.044
tr|Q8S678|Q8S678_ORYSJ Putative polyprotein (Retrotransposon pro...    40   0.044
tr|Q8LLX8|Q8LLX8_ORYSJ Putative retroelement (Retrotransposon pr...    40   0.044
tr|Q7XP82|Q7XP82_ORYSJ OSJNBa0021F22.18 protein OS=Oryza sativa ...    40   0.044
tr|Q75H18|Q75H18_ORYSJ Putative integrase (Retrotransposon prote...    40   0.044
tr|Q60E46|Q60E46_ORYSJ Putative polyprotein OS=Oryza sativa subs...    40   0.044

>tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            sub-class OS=Oryza sativa subsp. japonica GN=Os03g29940
            PE=4 SV=1
          Length = 1223

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLD 180
            E +NCTL   L A +   + +   E LP+    YN    ++TKVSPF+ +YG  P++P+D
Sbjct: 915  EVVNCTLGTMLRAILKK-NLKMWEECLPHVEFAYNRATHSTTKVSPFQVVYGFNPRAPID 973


>tr|Q25AL5|Q25AL5_ORYSA H0102C09.1 protein OS=Oryza sativa
            GN=H0102C09.1 PE=4 SV=1
          Length = 1825

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 27/59 (45%), Positives = 32/59 (54%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPL 177
            ERLN  L+  L AY         ++ LPYA   YN   Q S K+SP  ALYGR  Q+PL
Sbjct: 1576 ERLNQRLEDMLRAYALDFAASW-DKCLPYAEFSYNNSYQASLKMSPHEALYGRKCQTPL 1633


>tr|Q6IFU0|Q6IFU0_SCHMA Pol polyprotein OS=Schistosoma mansoni PE=2
            SV=1
          Length = 1382

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 30/98 (30%), Positives = 47/98 (47%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLD 180
            ER N ++K  L A++    QE  ++VLP     Y T V  ST  SP   L+G   + P++
Sbjct: 1157 ERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAILLFGHELRLPVE 1216

Query: 181  PKTNKLTATKVDAVDWLAYLNXNLPLLRRAISINPSEA 294
             +T  L   + + V ++  L   L    R +S N  +A
Sbjct: 1217 IQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKA 1254


>tr|Q6WAY3|Q6WAY3_PEA Gag/pol polyprotein OS=Pisum sativum PE=4 SV=1
          Length = 2262

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +1

Query: 70   NEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLD---PKTNKLTATKVDAVDWL 231
            +E+LP+A H Y T V+TST  +P+  +YG     P++   P    L   K+D  +W+
Sbjct: 2101 HEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLLDVKLDEAEWI 2157


>tr|Q6UUS1|Q6UUS1_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0079I01.15 PE=4 SV=1
          Length = 1234

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 30/104 (28%), Positives = 52/104 (50%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLD 180
            ERLN  L+  L A +    +  G++ LPYA   YN   Q S +++P+ ALYGR  ++PL 
Sbjct: 976  ERLNQILEDMLRACVLDFGKT-GDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL- 1033

Query: 181  PKTNKLTATKVDAVDWLAYLNXNLPLLRRAISINPSEAKGSTNH 312
               +++  ++V   D        +  +R  + +  S  K S ++
Sbjct: 1034 -LWDQVGESQVFGTDIFREAEAKVRTIRENLKVAQSRQKSSADN 1076


>tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
          Length = 1484

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +1

Query: 79   LPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLDPKTNKLTATKVDAVDWLAYLNXNLPL 258
            LPYA   YN   Q S K++PF ALYGR  ++PL    N+   T+V   D L +    +  
Sbjct: 1262 LPYAEFSYNNSYQQSLKMAPFEALYGRKCRTPL--FWNQTGETQVFGTDVLRHAEQQVRT 1319

Query: 259  LRRAISINPSEAK 297
            +R  + +  S  K
Sbjct: 1320 IRDNLRVAQSRQK 1332


>tr|B7ZFS7|B7ZFS7_9METZ Polyprotein OS=Lubomirskia baicalensis PE=4
            SV=1
          Length = 1425

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQ---- 168
            ER N TL + L  Y++   +E   + LP A   Y T V +ST V+PF+ +YGR P     
Sbjct: 1173 ERFNRTLLQLLRTYVEK--KEEWEKYLPLALFAYRTAVHSSTGVTPFKLMYGREPSNGIF 1230

Query: 169  -SPLDPKTNKLTA 204
             SP+  + N+  A
Sbjct: 1231 TSPVGHEANQFPA 1243


>tr|Q7XE62|Q7XE62_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g29980 PE=4 SV=1
          Length = 1364

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +1

Query: 79   LPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPL---DPKTNKLTATKVDAVDWLAYLNXN 249
            LPYA   YN   Q S +++PF ALYGR  ++PL        +L  T+V     LA     
Sbjct: 1288 LPYAEFSYNNSYQASLQMAPFEALYGRKCRTPLFWDQTGERQLFGTEV-----LAEAEEK 1342

Query: 250  LPLLRRAISINPSEAKGSTNHC 315
            + ++R  + I  S  K   ++C
Sbjct: 1343 VRIIREGLRIAQSRQKSYADNC 1364


>tr|Q6MWG4|Q6MWG4_ORYSJ B1160F02.12 protein OS=Oryza sativa subsp.
           japonica GN=B1160F02.12 PE=4 SV=1
          Length = 713

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 32/99 (32%), Positives = 44/99 (44%)
 Frame = +1

Query: 1   ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPLD 180
           ERLN  L+  L AY         ++ LPYA   YN   Q S K+SP  ALYGR  ++PL 
Sbjct: 464 ERLNQRLEDMLRAYALDFAASW-DKCLPYAEFSYNNSYQASLKMSPHEALYGRKCRTPL- 521

Query: 181 PKTNKLTATKVDAVDWLAYLNXNLPLLRRAISINPSEAK 297
               +     +   D L      + L+R  + +  S  K
Sbjct: 522 -IWTETRERSIFGTDLLKEAEEKVRLIRNRLKVAQSRQK 559


>tr|Q2QSP0|Q2QSP0_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g23440 PE=4 SV=2
          Length = 1613

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = +1

Query: 1    ERLNCTLKKTLFAYIDPLHQECGNEVLPYAAHDYNTFVQTSTKVSPFRALYGRYPQSPL 177
            ERLN  L+  L A +    +  G++ LPYA   YN   Q S +++P+ ALYGR  ++PL
Sbjct: 1376 ERLNQILEDMLRACVLDFGKT-GDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 1433