BP916593
Clone id YMU001_000089_D06
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAAACTTTGATCTAAAAGGGCTCACTCATCGTAATACACTTCAACCAGATAAAGCTGTC
GCTCGAAAGGAAGAATGTTTTCAAAGAGAAAATCTGGTGACCATGATCCATTGCCAGACA
TTAGAGTATCATATGCTTCCCTGAAGGCATCCTGAATAGCTAAAAAATTGAAGGAATTTT
TACCAATGTCCATAGACGGCGTTAAGGGATCCTCGATAACAAGTTGTTCGAGCATGTACT
GATCACGGCTGACAAAGTTCCTCTCCATGCCGCAAAAGATGAAGCCATTATTGCGGCAAG
AGATCCCAAAATGCAGATACAAACTTGAAGAATAAAAATGGAAGAAGCTCACCAAGAGGA
AACCTAATCCTGCATTTTCTTCAAATTCCAACAACGAGTGTTGTGCATGCCCATACCATA
AATCCAGCTTGTAATCCTCTCTGTATAGATGCTTAGGATGAAAGGGCATAGTACAAATGT
CATCATCATTTCCTTCGATTTCCCCTCTGTACCATGGTAGCAACTCTTCTGGAACATC
■■Homology search results ■■ -
sp_hit_id Q68ED3
Definition sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus
Align length 62
Score (bit) 38.1
E-value 0.028
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916593|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D06.
(538 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5... 38 0.028
sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5... 38 0.028
sp|Q6PB75|POLS_MOUSE DNA polymerase sigma OS=Mus musculus GN=Pol... 35 0.18
sp|Q5XG87|POLS_HUMAN DNA polymerase sigma OS=Homo sapiens GN=POL... 35 0.18
sp|P50365|NU5M_ALLMA NADH-ubiquinone oxidoreductase chain 5 OS=A... 33 0.68
sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosacc... 33 0.89
sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya ... 32 2.6
sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Sacchar... 31 4.4
sp|O73823|TAL1_XENLA T-cell acute lymphocytic leukemia protein 1... 30 9.8
sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Sacchar... 30 9.8
sp|Q9FLV8|FK112_ARATH Putative F-box/Kelch-repeat protein At5g24... 30 9.8

>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5
OS=Mus musculus GN=Papd5 PE=2 SV=2
Length = 633

Score = 38.1 bits (87), Expect = 0.028
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GI ++ G E D Y L IEDPL P D+G++S+ + ++ AF AY
Sbjct: 344 GIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYV 403

Query: 127 TL 122
L
Sbjct: 404 VL 405


>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5
OS=Homo sapiens GN=PAPD5 PE=2 SV=2
Length = 572

Score = 38.1 bits (87), Expect = 0.028
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GI ++ G E D Y L IEDPL P D+G++S+ + ++ AF AY
Sbjct: 330 GIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYV 389

Query: 127 TL 122
L
Sbjct: 390 VL 391


>sp|Q6PB75|POLS_MOUSE DNA polymerase sigma OS=Mus musculus GN=Pols
PE=2 SV=1
Length = 542

Score = 35.4 bits (80), Expect = 0.18
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GI + G E Y L IEDPL P D+G++S+ + ++ F AY
Sbjct: 200 GIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYI 259

Query: 127 TL 122
L
Sbjct: 260 VL 261


>sp|Q5XG87|POLS_HUMAN DNA polymerase sigma OS=Homo sapiens GN=POLS
PE=2 SV=2
Length = 542

Score = 35.4 bits (80), Expect = 0.18
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GI + G E Y L IEDPL P D+G++S+ + ++ F AY
Sbjct: 200 GIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYI 259

Query: 127 TL 122
L
Sbjct: 260 VL 261


>sp|P50365|NU5M_ALLMA NADH-ubiquinone oxidoreductase chain 5
OS=Allomyces macrogynus GN=ND5 PE=3 SV=1
Length = 641

Score = 33.5 bits (75), Expect = 0.68
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2

Query: 324 VCICILGSLAAIMASSFAAWRGTLSAVI--STCS 229
+C+C++GSL AI A++ ++ L VI STCS
Sbjct: 277 ICVCVIGSLTAIFAATTGLFQNDLKRVIAYSTCS 310


>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12
OS=Schizosaccharomyces pombe GN=cid12 PE=1 SV=1
Length = 336

Score = 33.1 bits (74), Expect = 0.89
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Frame = -1

Query: 223 LVIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTLMSGNGSWSPDFL-----------FEN 77
L IEDP+ + DIGK SF I+ AF + + L+S + +W F FEN
Sbjct: 253 LSIEDPIDRNNDIGKQSFQISMIKAAFVASANELLS-DKTWFSTFAITEDEMFLCKQFEN 311

Query: 76 ILPFERQL 53
++ +R L
Sbjct: 312 VINTKRSL 319


>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya
gossypii GN=TRF5 PE=3 SV=1
Length = 626

Score = 31.6 bits (70), Expect = 2.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1

Query: 223 LVIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTL 122
LVI+DP P+ +I + SFN I+ AF A++ L
Sbjct: 438 LVIQDPGDPANNISRGSFNIRDIKKAFAGAFELL 471


>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1
OS=Saccharomyces cerevisiae GN=TRF5 PE=1 SV=2
Length = 642

Score = 30.8 bits (68), Expect = 4.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1

Query: 223 LVIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTLMS 116
L I+DP P+ +I + SFN I+ AF A++ L++
Sbjct: 418 LAIQDPGDPNNNISRGSFNMKDIKKAFAGAFELLVN 453


>sp|O73823|TAL1_XENLA T-cell acute lymphocytic leukemia protein 1
OS=Xenopus laevis GN=tal1 PE=2 SV=1
Length = 394

Score = 29.6 bits (65), Expect = 9.8
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -1

Query: 271 GMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTLMS 116
G +RN ++D M++Q +++D L+P+ G +S + D++ E +D L S
Sbjct: 325 GNQRNKGNKDNGMVQQELLQDMLSPNSSCG-SSLDGAPSPDSYSEEHDALDS 375


>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2
OS=Saccharomyces cerevisiae GN=PAP2 PE=1 SV=1
Length = 584

Score = 29.6 bits (65), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1

Query: 223 LVIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTL 122
L I+DP S +I + SFN I+ AF A+D L
Sbjct: 421 LAIQDPGDESNNISRGSFNIRDIKKAFAGAFDLL 454


tr_hit_id Q5QMQ1
Definition tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like OS=Oryza sativa subsp. japonica
Align length 66
Score (bit) 58.2
E-value 3.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916593|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D06.
(538 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like OS=O... 58 3e-07
tr|Q0JKI4|Q0JKI4_ORYSJ Os01g0672700 protein (Fragment) OS=Oryza ... 58 3e-07
tr|Q05K40|Q05K40_ORYSJ Putative uncharacterized protein OS=Oryza... 58 3e-07
tr|B8A791|B8A791_ORYSI Putative uncharacterized protein OS=Oryza... 58 3e-07
tr|A2ZWF3|A2ZWF3_ORYSJ Putative uncharacterized protein OS=Oryza... 58 3e-07
tr|Q9FHZ9|Q9FHZ9_ARATH Similarity to topoisomerase-related funct... 52 2e-05
tr|Q84WU1|Q84WU1_ARATH Putative uncharacterized protein At5g5377... 52 2e-05
tr|Q2PEP4|Q2PEP4_TRIPR Putative uncharacterized protein (Fragmen... 52 3e-05
tr|Q16LC4|Q16LC4_AEDAE Sigma DNA polymerase, putative OS=Aedes a... 45 0.002
tr|B7GDQ2|B7GDQ2_PHATR Predicted protein OS=Phaeodactylum tricor... 44 0.004
tr|A9SPG3|A9SPG3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004
tr|Q29GC5|Q29GC5_DROPS GA10875 OS=Drosophila pseudoobscura pseud... 44 0.005
tr|B4L4U6|B4L4U6_DROMO GI15833 OS=Drosophila mojavensis GN=GI158... 44 0.005
tr|B4K7V2|B4K7V2_DROMO GI22217 OS=Drosophila mojavensis GN=GI222... 44 0.005
tr|B4GVL7|B4GVL7_DROPE GL14678 OS=Drosophila persimilis GN=GL146... 44 0.005
tr|Q7KVS9|Q7KVS9_DROME CG11265, isoform C OS=Drosophila melanoga... 43 0.009
tr|B4Q099|B4Q099_DROYA GE15792 OS=Drosophila yakuba GN=GE15792 P... 43 0.009
tr|B4NER7|B4NER7_DROWI GK25231 OS=Drosophila willistoni GN=GK252... 43 0.009
tr|B4M2B5|B4M2B5_DROVI GJ18687 OS=Drosophila virilis GN=GJ18687 ... 43 0.009
tr|B4IJY2|B4IJY2_DROSE GM21691 OS=Drosophila sechellia GN=GM2169... 43 0.009
tr|B3NVG2|B3NVG2_DROER GG18260 OS=Drosophila erecta GN=GG18260 P... 43 0.009
tr|A8JV36|A8JV36_DROME CG11265, isoform F OS=Drosophila melanoga... 43 0.009
tr|B3N0E8|B3N0E8_DROAN GF21834 OS=Drosophila ananassae GN=GF2183... 43 0.012
tr|B6KVI3|B6KVI3_TOXGO Putative uncharacterized protein OS=Toxop... 42 0.020
tr|A7S822|A7S822_NEMVE Predicted protein (Fragment) OS=Nematoste... 42 0.020
tr|B5YMB1|B5YMB1_THAPS Predicted protein OS=Thalassiosira pseudo... 41 0.035
tr|B4JLS4|B4JLS4_DROGR GH24510 OS=Drosophila grimshawi GN=GH2451... 41 0.046
tr|B4LX12|B4LX12_DROVI GJ24338 OS=Drosophila virilis GN=GJ24338 ... 40 0.060
tr|Q5ZKG9|Q5ZKG9_CHICK Putative uncharacterized protein OS=Gallu... 40 0.10
tr|A2RUY9|A2RUY9_DANRE LOC568678 protein (Fragment) OS=Danio rer... 39 0.13

>tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like
OS=Oryza sativa subsp. japonica GN=P0007F06.20-1 PE=4
SV=1
Length = 578

Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY
Sbjct: 357 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 414

Query: 127 TLMSGN 110
L N
Sbjct: 415 VLTDAN 420


>tr|Q0JKI4|Q0JKI4_ORYSJ Os01g0672700 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os01g0672700 PE=4 SV=1
Length = 623

Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY
Sbjct: 402 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 459

Query: 127 TLMSGN 110
L N
Sbjct: 460 VLTDAN 465


>tr|Q05K40|Q05K40_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 578

Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY
Sbjct: 357 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 414

Query: 127 TLMSGN 110
L N
Sbjct: 415 VLTDAN 420


>tr|B8A791|B8A791_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_03224 PE=4 SV=1
Length = 571

Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY
Sbjct: 350 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 407

Query: 127 TLMSGN 110
L N
Sbjct: 408 VLTDAN 413


>tr|A2ZWF3|A2ZWF3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_002875 PE=4 SV=1
Length = 583

Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY
Sbjct: 362 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 419

Query: 127 TLMSGN 110
L N
Sbjct: 420 VLTDAN 425


>tr|Q9FHZ9|Q9FHZ9_ARATH Similarity to topoisomerase-related function
protein OS=Arabidopsis thaliana PE=4 SV=1
Length = 533

Score = 52.4 bits (124), Expect = 2e-05
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC+ G F + F++R + L + IEDP TP DIGK+SFN+ I+ AF A
Sbjct: 334 GISCKMGGSFFSKYNKGFLNRARPSL--ISIEDPQTPENDIGKSSFNYFQIRSAFAMALS 391

Query: 127 TL 122
TL
Sbjct: 392 TL 393


>tr|Q84WU1|Q84WU1_ARATH Putative uncharacterized protein At5g53770
OS=Arabidopsis thaliana GN=At5g53770 PE=2 SV=1
Length = 530

Score = 52.4 bits (124), Expect = 2e-05
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GISC+ G F + F++R + L + IEDP TP DIGK+SFN+ I+ AF A
Sbjct: 331 GISCKMGGSFFSKYNKGFLNRARPSL--ISIEDPQTPENDIGKSSFNYFQIRSAFAMALS 388

Query: 127 TL 122
TL
Sbjct: 389 TL 390


>tr|Q2PEP4|Q2PEP4_TRIPR Putative uncharacterized protein (Fragment)
OS=Trifolium pratense PE=2 SV=1
Length = 518

Score = 51.6 bits (122), Expect = 3e-05
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
G+SC G F R F ++ + L L I+DP TP DIGKNSFN+ ++ AF A+
Sbjct: 321 GVSCIGEGTFFRKSSRGFYNKTRPFL--LGIQDPQTPDNDIGKNSFNYFQVRSAFLMAFT 378

Query: 127 TL 122
TL
Sbjct: 379 TL 380


>tr|Q16LC4|Q16LC4_AEDAE Sigma DNA polymerase, putative OS=Aedes
aegypti GN=AAEL012692 PE=4 SV=1
Length = 491

Score = 45.1 bits (105), Expect = 0.002
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = -1

Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128
GIS +N G E D + L IEDPLTP DIG++S+ L ++ AF AY
Sbjct: 199 GISVKNGGRYIPKEELQREMIDGHRPSLLCIEDPLTPGNDIGRSSYGALQVKQAFEYAYI 258

Query: 127 TLM 119
LM
Sbjct: 259 VLM 261


>tr|B7GDQ2|B7GDQ2_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_50322 PE=4 SV=1
Length = 425

Score = 44.3 bits (103), Expect = 0.004
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -1

Query: 394 LLEFEENAGLGXXXXXXXXXXXXXXXXXFGISCRNNGFIFC--GMERNFVSRDQYMLEQL 221
LLEF E G+G GIS RN+GF F ER + + +
Sbjct: 288 LLEFLELYGIGFNYTTT------------GISVRNDGFYFPKGSSERKEIFWQPSRVFMI 335

Query: 220 VIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTLMS 116
+E+PL +MD+G++SF +Q AF AY L++
Sbjct: 336 GMENPLETTMDVGRSSFRIRVVQGAFAAAYRVLLT 370