BP916593 |
Clone id |
YMU001_000089_D06 |
Library |
YMU01 |
Length |
538 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000089_D06. |
Accession |
BP916593 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACAAACTTTGATCTAAAAGGGCTCACTCATCGTAATACACTTCAACCAGATAAAGCTGTC GCTCGAAAGGAAGAATGTTTTCAAAGAGAAAATCTGGTGACCATGATCCATTGCCAGACA TTAGAGTATCATATGCTTCCCTGAAGGCATCCTGAATAGCTAAAAAATTGAAGGAATTTT TACCAATGTCCATAGACGGCGTTAAGGGATCCTCGATAACAAGTTGTTCGAGCATGTACT GATCACGGCTGACAAAGTTCCTCTCCATGCCGCAAAAGATGAAGCCATTATTGCGGCAAG AGATCCCAAAATGCAGATACAAACTTGAAGAATAAAAATGGAAGAAGCTCACCAAGAGGA AACCTAATCCTGCATTTTCTTCAAATTCCAACAACGAGTGTTGTGCATGCCCATACCATA AATCCAGCTTGTAATCCTCTCTGTATAGATGCTTAGGATGAAAGGGCATAGTACAAATGT CATCATCATTTCCTTCGATTTCCCCTCTGTACCATGGTAGCAACTCTTCTGGAACATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q68ED3 |
Definition |
sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus |
Align length |
62 |
Score (bit) |
38.1 |
E-value |
0.028 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5QMQ1 |
Definition |
tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like OS=Oryza sativa subsp. japonica |
Align length |
66 |
Score (bit) |
58.2 |
E-value |
3.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916593|Adiantum capillus-veneris mRNA, clone: YMU001_000089_D06. (538 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like OS=O... 58 3e-07 tr|Q0JKI4|Q0JKI4_ORYSJ Os01g0672700 protein (Fragment) OS=Oryza ... 58 3e-07 tr|Q05K40|Q05K40_ORYSJ Putative uncharacterized protein OS=Oryza... 58 3e-07 tr|B8A791|B8A791_ORYSI Putative uncharacterized protein OS=Oryza... 58 3e-07 tr|A2ZWF3|A2ZWF3_ORYSJ Putative uncharacterized protein OS=Oryza... 58 3e-07 tr|Q9FHZ9|Q9FHZ9_ARATH Similarity to topoisomerase-related funct... 52 2e-05 tr|Q84WU1|Q84WU1_ARATH Putative uncharacterized protein At5g5377... 52 2e-05 tr|Q2PEP4|Q2PEP4_TRIPR Putative uncharacterized protein (Fragmen... 52 3e-05 tr|Q16LC4|Q16LC4_AEDAE Sigma DNA polymerase, putative OS=Aedes a... 45 0.002 tr|B7GDQ2|B7GDQ2_PHATR Predicted protein OS=Phaeodactylum tricor... 44 0.004 tr|A9SPG3|A9SPG3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|Q29GC5|Q29GC5_DROPS GA10875 OS=Drosophila pseudoobscura pseud... 44 0.005 tr|B4L4U6|B4L4U6_DROMO GI15833 OS=Drosophila mojavensis GN=GI158... 44 0.005 tr|B4K7V2|B4K7V2_DROMO GI22217 OS=Drosophila mojavensis GN=GI222... 44 0.005 tr|B4GVL7|B4GVL7_DROPE GL14678 OS=Drosophila persimilis GN=GL146... 44 0.005 tr|Q7KVS9|Q7KVS9_DROME CG11265, isoform C OS=Drosophila melanoga... 43 0.009 tr|B4Q099|B4Q099_DROYA GE15792 OS=Drosophila yakuba GN=GE15792 P... 43 0.009 tr|B4NER7|B4NER7_DROWI GK25231 OS=Drosophila willistoni GN=GK252... 43 0.009 tr|B4M2B5|B4M2B5_DROVI GJ18687 OS=Drosophila virilis GN=GJ18687 ... 43 0.009 tr|B4IJY2|B4IJY2_DROSE GM21691 OS=Drosophila sechellia GN=GM2169... 43 0.009 tr|B3NVG2|B3NVG2_DROER GG18260 OS=Drosophila erecta GN=GG18260 P... 43 0.009 tr|A8JV36|A8JV36_DROME CG11265, isoform F OS=Drosophila melanoga... 43 0.009 tr|B3N0E8|B3N0E8_DROAN GF21834 OS=Drosophila ananassae GN=GF2183... 43 0.012 tr|B6KVI3|B6KVI3_TOXGO Putative uncharacterized protein OS=Toxop... 42 0.020 tr|A7S822|A7S822_NEMVE Predicted protein (Fragment) OS=Nematoste... 42 0.020 tr|B5YMB1|B5YMB1_THAPS Predicted protein OS=Thalassiosira pseudo... 41 0.035 tr|B4JLS4|B4JLS4_DROGR GH24510 OS=Drosophila grimshawi GN=GH2451... 41 0.046 tr|B4LX12|B4LX12_DROVI GJ24338 OS=Drosophila virilis GN=GJ24338 ... 40 0.060 tr|Q5ZKG9|Q5ZKG9_CHICK Putative uncharacterized protein OS=Gallu... 40 0.10 tr|A2RUY9|A2RUY9_DANRE LOC568678 protein (Fragment) OS=Danio rer... 39 0.13
>tr|Q5QMQ1|Q5QMQ1_ORYSJ Polymerase (DNA directed) sigma-like OS=Oryza sativa subsp. japonica GN=P0007F06.20-1 PE=4 SV=1 Length = 578
Score = 58.2 bits (139), Expect = 3e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY Sbjct: 357 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 414
Query: 127 TLMSGN 110 L N Sbjct: 415 VLTDAN 420
>tr|Q0JKI4|Q0JKI4_ORYSJ Os01g0672700 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0672700 PE=4 SV=1 Length = 623
Score = 58.2 bits (139), Expect = 3e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY Sbjct: 402 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 459
Query: 127 TLMSGN 110 L N Sbjct: 460 VLTDAN 465
>tr|Q05K40|Q05K40_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 578
Score = 58.2 bits (139), Expect = 3e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY Sbjct: 357 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 414
Query: 127 TLMSGN 110 L N Sbjct: 415 VLTDAN 420
>tr|B8A791|B8A791_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03224 PE=4 SV=1 Length = 571
Score = 58.2 bits (139), Expect = 3e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY Sbjct: 350 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 407
Query: 127 TLMSGN 110 L N Sbjct: 408 VLTDAN 413
>tr|A2ZWF3|A2ZWF3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002875 PE=4 SV=1 Length = 583
Score = 58.2 bits (139), Expect = 3e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC + F ++NF + D+ L L I+DP+ P DIGKNSFN+ ++ AF +AY Sbjct: 362 GISCNSARTFFLKTDKNFANPDRAYL--LAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYS 419
Query: 127 TLMSGN 110 L N Sbjct: 420 VLTDAN 425
>tr|Q9FHZ9|Q9FHZ9_ARATH Similarity to topoisomerase-related function protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 533
Score = 52.4 bits (124), Expect = 2e-05 Identities = 28/62 (45%), Positives = 37/62 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC+ G F + F++R + L + IEDP TP DIGK+SFN+ I+ AF A Sbjct: 334 GISCKMGGSFFSKYNKGFLNRARPSL--ISIEDPQTPENDIGKSSFNYFQIRSAFAMALS 391
Query: 127 TL 122 TL Sbjct: 392 TL 393
>tr|Q84WU1|Q84WU1_ARATH Putative uncharacterized protein At5g53770 OS=Arabidopsis thaliana GN=At5g53770 PE=2 SV=1 Length = 530
Score = 52.4 bits (124), Expect = 2e-05 Identities = 28/62 (45%), Positives = 37/62 (59%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GISC+ G F + F++R + L + IEDP TP DIGK+SFN+ I+ AF A Sbjct: 331 GISCKMGGSFFSKYNKGFLNRARPSL--ISIEDPQTPENDIGKSSFNYFQIRSAFAMALS 388
Query: 127 TL 122 TL Sbjct: 389 TL 390
>tr|Q2PEP4|Q2PEP4_TRIPR Putative uncharacterized protein (Fragment) OS=Trifolium pratense PE=2 SV=1 Length = 518
Score = 51.6 bits (122), Expect = 3e-05 Identities = 27/62 (43%), Positives = 36/62 (58%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 G+SC G F R F ++ + L L I+DP TP DIGKNSFN+ ++ AF A+ Sbjct: 321 GVSCIGEGTFFRKSSRGFYNKTRPFL--LGIQDPQTPDNDIGKNSFNYFQVRSAFLMAFT 378
Query: 127 TL 122 TL Sbjct: 379 TL 380
>tr|Q16LC4|Q16LC4_AEDAE Sigma DNA polymerase, putative OS=Aedes aegypti GN=AAEL012692 PE=4 SV=1 Length = 491
Score = 45.1 bits (105), Expect = 0.002 Identities = 26/63 (41%), Positives = 33/63 (52%) Frame = -1
Query: 307 GISCRNNGFIFCGMERNFVSRDQYMLEQLVIEDPLTPSMDIGKNSFNFLAIQDAFREAYD 128 GIS +N G E D + L IEDPLTP DIG++S+ L ++ AF AY Sbjct: 199 GISVKNGGRYIPKEELQREMIDGHRPSLLCIEDPLTPGNDIGRSSYGALQVKQAFEYAYI 258
Query: 127 TLM 119 LM Sbjct: 259 VLM 261
>tr|B7GDQ2|B7GDQ2_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_50322 PE=4 SV=1 Length = 425
Score = 44.3 bits (103), Expect = 0.004 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = -1
Query: 394 LLEFEENAGLGXXXXXXXXXXXXXXXXXFGISCRNNGFIFC--GMERNFVSRDQYMLEQL 221 LLEF E G+G GIS RN+GF F ER + + + Sbjct: 288 LLEFLELYGIGFNYTTT------------GISVRNDGFYFPKGSSERKEIFWQPSRVFMI 335
Query: 220 VIEDPLTPSMDIGKNSFNFLAIQDAFREAYDTLMS 116 +E+PL +MD+G++SF +Q AF AY L++ Sbjct: 336 GMENPLETTMDVGRSSFRIRVVQGAFAAAYRVLLT 370
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