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NBDC - LSDB Archive
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BP916596
Clone id YMU001_000089_D09
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTGCACTCGCTGATCATCTCTAGACCGGCAGTAGCAATGGCGAGCTCTGTGGCTTCTTT
GGCAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTATCTAAGAGCTTCTCCGGCCT
CAGGCCCACTATCCTCGCTGCCCCCAAGAGCGCCAACCCGCTCTCCATCTCCAACGGCAG
CCGCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTC
CTACTTGCCGCCTTTGACAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAA
AGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGAAGCGTATACCGAGAGCACTTCCA
TGGCAGCGGCTACTACGATGGGCGATACTGGGTGATGTGGAAGTTGCCCATGTCTGGCTG
CCAAGATGCCGCCGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTACCCCGAAGC
CTTCATCCGCGTGCTGGGCTTTGACGCCAAGAGGCAGGTGCAGGTCTCCGGCTTCCTT
■■Homology search results ■■ -
sp_hit_id P19312
Definition sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba
Align length 147
Score (bit) 175.0
E-value 1.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916596|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D09.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   172   9e-43
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   171   2e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   169   8e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   169   8e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   169   8e-42
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   168   1e-41
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   168   1e-41
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   168   2e-41
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   168   2e-41
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   167   2e-41
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   167   2e-41
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   166   5e-41
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   166   5e-41
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   166   5e-41
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   166   5e-41

>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  175 bits (444), Expect = 1e-43
 Identities = 85/147 (57%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
 Frame = +2

Query: 110 FSGLRPTIL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 277
           F+GLR ++   A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 278 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPM GC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
             K YPE F+R++GFD KRQVQ   F+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  175 bits (444), Expect = 1e-43
 Identities = 85/147 (57%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
 Frame = +2

Query: 110 FSGLRPTIL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 277
           F+GLR ++   A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 278 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPM GC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
             K YPE F+R++GFD KRQVQ   F+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  174 bits (441), Expect = 2e-43
 Identities = 82/152 (53%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
 Frame = +2

Query: 98  LSKSFSGLRPTIL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSE 265
           L+  F+GL+  +      K+ N  S   SNG RV  M VW P   KK+ETLSYLPPL+ E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 266 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVL 442
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPM GC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 443 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           +E+ EC KEYP AFIRV+GFD  RQVQ   F+
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  174 bits (440), Expect = 3e-43
 Identities = 76/123 (61%), Positives = 93/123 (75%)
 Frame = +2

Query: 170 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 349
           SNG RV  M VW P   KKFETLSYLPPLT EQ+ ++VD+++R GW PCIEF K+G VYR
Sbjct: 49  SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYR 108

Query: 350 EHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 529
           E+ +  GYYDGRYW MWKLPM GC D++ VL+E+ EC+K YP+ F R++GFD  RQVQ  
Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCI 168

Query: 530 GFL 538
            FL
Sbjct: 169 SFL 171


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  172 bits (436), Expect = 9e-43
 Identities = 78/124 (62%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
 Frame = +2

Query: 170 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 346
           SNG RV  M VW P   KKFETLSYLPPL+SEQ+AK+VD+++RK   PC+EF+ + G VY
Sbjct: 52  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVY 111

Query: 347 REHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQV 526
           REH    GYYDGRYW MWKLPM GC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+
Sbjct: 112 REHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQI 171

Query: 527 SGFL 538
             F+
Sbjct: 172 ISFI 175


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  172 bits (435), Expect = 1e-42
 Identities = 77/146 (52%), Positives = 101/146 (69%), Gaps = 3/146 (2%)
 Frame = +2

Query: 110 FSGLRPTI---LAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 280
           F GL+ T    ++   +A+  S+SNG R+  M VW     KKFETLSYLPPL++E + KQ
Sbjct: 16  FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 281 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAEC 460
           VD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPM GC DA  VL E+ E 
Sbjct: 76  VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 461 AKEYPEAFIRVLGFDAKRQVQVSGFL 538
            KEYP+A++R++GFD  RQVQ   F+
Sbjct: 136 KKEYPDAYVRIIGFDNMRQVQCVSFI 161


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  171 bits (434), Expect = 2e-42
 Identities = 82/151 (54%), Positives = 108/151 (71%), Gaps = 4/151 (2%)
 Frame = +2

Query: 98  LSKSFSGLRPTI-LAAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 268
           L+  F+GL+ +      K  N ++   SNGSRV+ M VW P   KKFETLSYLPPLT EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 269 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLR 445
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+ G  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 446 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           E+AEC  EYPEAFIR++GFD  RQVQ   F+
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFI 171


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  171 bits (434), Expect = 2e-42
 Identities = 83/147 (56%), Positives = 104/147 (70%), Gaps = 4/147 (2%)
 Frame = +2

Query: 110 FSGLRPTI-LAAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 280
           F+GL+        K AN  S   SNG RV  M VW P   KK+ETLSYLPPLT  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 281 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPM GC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           C KEYP+A+IR++GFD  RQVQ   F+
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQCIMFI 171


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  171 bits (434), Expect = 2e-42
 Identities = 83/147 (56%), Positives = 102/147 (69%), Gaps = 4/147 (2%)
 Frame = +2

Query: 110 FSGLRPTIL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 277
           F+GLR ++   A  K+   LS   SNG +VS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 278 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPM GC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
             K YPE F+R++GFD KRQVQ   F+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  171 bits (434), Expect = 2e-42
 Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 5/148 (3%)
 Frame = +2

Query: 110 FSGLRPTIL--AAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 277
           F+GL+ +    A  K+ N ++   SNG RV+ M VW P   KKFETLSYLP LT  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 278 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+ GC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC KEYP AFIR++GFD  RQVQ   F+
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFI 171
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 147
Score (bit) 271.0
E-value 1.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916596|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_D09.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   271   1e-71
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   192   7e-48
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   188   1e-46
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   176   7e-43
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c...   173   6e-42
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   173   6e-42
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   172   8e-42
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   172   8e-42
tr|Q575T3|Q575T3_TRITU Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9SAW5|Q9SAW5_WHEAT Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9S7N3|Q9S7N3_AEGLO Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9FRZ2|Q9FRZ2_WHEAT Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9ZRS6|Q9ZRS6_SECCE Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q9SAX5|Q9SAX5_AEGSP Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q9SDY8|Q9SDY8_9POAL Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q9SAX2|Q9SAX2_9POAL Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   171   2e-41

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  271 bits (694), Expect = 1e-71
 Identities = 126/147 (85%), Positives = 137/147 (93%)
 Frame = +2

Query: 98  LSKSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 277
           LSKSFSGL+   L APK ANPL+ISNGSR+SAMLVWKPYDNKKFETLSYLPPLT++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 278 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPM GC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           CAKEYP AFIRVLGFDAKRQVQV+GFL
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFL 168


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  192 bits (489), Expect = 7e-48
 Identities = 91/148 (61%), Positives = 109/148 (73%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K FSGL+ T L+A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM GC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC + +P  ++RVLGFD+K+QVQ+ GFL
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFL 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  191 bits (486), Expect = 2e-47
 Identities = 91/148 (61%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K FSGL+ T L A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM GC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC + +P  ++RVLGFD+K+QVQ+ GFL
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFL 174


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  188 bits (478), Expect = 1e-46
 Identities = 87/148 (58%), Positives = 109/148 (73%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K+FSGL+P  L + K+    ++ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM GC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC  ++P  ++RVLGFD+K+QVQ+ GFL
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFL 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  187 bits (474), Expect = 4e-46
 Identities = 87/148 (58%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K+FSGL+   L + K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM GC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC  ++P  ++RVLGFD+K+QVQ+ GFL
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFL 209


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  184 bits (468), Expect = 2e-45
 Identities = 86/148 (58%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K+FSGL+   L   KS    S+ NGSRV  M VW P    KFET SYLPPL+ +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPM GC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC   YP  ++RVLGFD+K+QVQ+ GFL
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFL 179


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  184 bits (467), Expect = 3e-45
 Identities = 85/148 (57%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K+FSGL+   L + ++    S+ NGSRV  M VW P    KFET SYLPPLT ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMSGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM GC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 455 ECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           EC  ++P  ++RVLGFD+K+QVQ+ GFL
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFL 178


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  176 bits (446), Expect = 7e-43
 Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 5/152 (3%)
 Frame = +2

Query: 98  LSKSFSGLRPTIL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSE 265
           L+  F+GL+  +      K+ N  S   SNG RV  M VW P   KK+ETLSYLPPL+ E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 266 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVL 442
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPM GC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 443 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           +E+ EC KEYP AFIRV+GFD+ RQVQ   F+
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDSVRQVQCISFI 173


>tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small
           chain OS=Panax ginseng PE=2 SV=1
          Length = 183

 Score =  176 bits (445), Expect = 9e-43
 Identities = 82/147 (55%), Positives = 104/147 (70%), Gaps = 4/147 (2%)
 Frame = +2

Query: 110 FSGLRPTI-LAAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 280
           F+GL+ T      +  N ++   SNG RV  M VW P   KKFETLSYLP LT EQ++K+
Sbjct: 28  FTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQLTQEQLSKE 87

Query: 281 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAE 457
           VD+++R GW PC+EF+ + G VYREH H  GYYDGRYW MWKLPM GC D++ VL+E+ E
Sbjct: 88  VDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVEE 147

Query: 458 CAKEYPEAFIRVLGFDAKRQVQVSGFL 538
           C KEYP A+IR++GFD  RQVQ   F+
Sbjct: 148 CKKEYPNAYIRIIGFDNVRQVQCISFI 174


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  175 bits (444), Expect = 1e-42
 Identities = 81/145 (55%), Positives = 101/145 (69%)
 Frame = +2

Query: 104 KSFSGLRPTILAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 283
           K+FSGL+   + + K+ N  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMSGCQDAAAVLREIAECA 463
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPM GCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 464 KEYPEAFIRVLGFDAKRQVQVSGFL 538
           K +P  F+RVLGFD  +QVQ+ GFL
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFL 176