NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916612
Clone id YMU001_000089_F01
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGAAATGAAGGTGAAGATCCTTACAGGATATTGGAAACTGGAAGAAAGGTCTATCTTGA
TGAGCTTGATGTGCTGACATTGCTGGATCCCCCTTCTTTTCTAATACCTAGTGATGCAAA
TGCCTATAATCAGGCTGCCTACCTTTGGAAGAAAATAGGAGACATTCCTGAGGAACGCAG
ACACTGTCTGCTTGATCTACTCACACCCAAGCATGTAGCAAATATGTGGGATATAACGGG
GCAAATCTATGAACTTCCAAATCGTCCGTTCTTAGAACCAGCCAATGTTCTACTCGGTAC
CCAAAGCGAGTTGTTCATGAAACCTGTGACATGGACTGGAAAAGCTTTCAATGTGTCATG
GCCTTTGAGTTGGTTCAGCGAGTTTCAGAAGGCATTATTTCTTGCAACAGACGGGAGTGT
ATATGGCAGAGTAATTACAGGAGGTTCAATGCTTAGGAGCATGAC
■■Homology search results ■■ -
sp_hit_id Q3UEN2
Definition sp|Q3UEN2|FAM35_MOUSE Protein FAM35 OS=Mus musculus
Align length 101
Score (bit) 30.4
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916612|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F01.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UEN2|FAM35_MOUSE Protein FAM35 OS=Mus musculus GN=Fam35 PE=...    30   3.9  
sp|P12351|HAP1_YEAST Heme-responsive zinc finger transcription f...    30   6.8  
sp|O00934|MYOA_TOXGO Myosin-A OS=Toxoplasma gondii PE=1 SV=1           29   8.7  
sp|Q9Y6F9|WNT6_HUMAN Protein Wnt-6 OS=Homo sapiens GN=WNT6 PE=2 ...    27   9.5  

>sp|Q3UEN2|FAM35_MOUSE Protein FAM35 OS=Mus musculus GN=Fam35 PE=2
           SV=1
          Length = 898

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +2

Query: 161 DIPEERRHCLLDLLTPKHVANMWDITGQIYELPNRPFLEP-ANVLLGTQSELFMKPVTWT 337
           D   ++ +CL+ +LTP HV  +   +G     PN     P A +++  QSE+  + V W 
Sbjct: 410 DSKNQKYNCLVMVLTPCHVKEITIKSG-----PNSGSKVPLATIVVIDQSEIKKRVVLWR 464

Query: 338 GKAFNVSWPLSWFSEFQKALFLATDGSVYGRVITGGSMLRS 460
             AF         + F   + L TD  +Y     G ++L+S
Sbjct: 465 TAAFGA------LTVFLGDIILLTDVVLYEDQWIGETVLQS 499


>sp|P12351|HAP1_YEAST Heme-responsive zinc finger transcription factor
            HAP1 OS=Saccharomyces cerevisiae GN=HAP1 PE=1 SV=3
          Length = 1483

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 438  VITLPYTLPSVARNNAF*NSLNQLKGHDTLKAFPVHVTGFMNNSLWVPSRTLAGSKN 268
            + T    LP  +R+ AF NS+ Q+         P+  + FMN +  +PS TL G+ N
Sbjct: 1331 ITTNQINLPDPSRDEAFDNSIKQMT--------PM-TSAFMNANTTIPSSTLNGNMN 1378


>sp|O00934|MYOA_TOXGO Myosin-A OS=Toxoplasma gondii PE=1 SV=1
          Length = 831

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = +2

Query: 83  LDPPSFLIPSD---ANAYNQAAYL----WKKIGDIPEERRHCLLDLLTPKHVANMWDITG 241
           +DPP F  P +   ANA+N  + +    +  IG +P     C+LD L  + + N    T 
Sbjct: 73  IDPPGFDEPFEVPQANAWNVNSLIDPMTYGDIGMLPHTNIPCVLDFLKVRFMKNQIYTTA 132

Query: 242 QIYELPNRPFLEPANVLL 295
               +   PF +  N  L
Sbjct: 133 DPLVVAINPFRDLGNTTL 150


>sp|Q9Y6F9|WNT6_HUMAN Protein Wnt-6 OS=Homo sapiens GN=WNT6 PE=2
           SV=2
          Length = 365

 Score = 26.6 bits (57), Expect(2) = 9.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 164 IPEERRHCLLDLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSEL 313
           +P      LL LL P HV  +W   G    +        A  L G Q+EL
Sbjct: 5   LPSRLGLLLLLLLCPAHVGGLWWAVGSPLVMDPTSICRKARRLAGRQAEL 54



 Score = 21.6 bits (44), Expect(2) = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 412 RECIWQSNYRRFNA*EH 462
           REC +Q  +RR+N   H
Sbjct: 74  RECQFQFRFRRWNCSSH 90
tr_hit_id A9RF25
Definition tr|A9RF25|A9RF25_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 207
Score (bit) 128.0
E-value 1.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916612|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F01.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RF25|A9RF25_PHYPA Predicted protein OS=Physcomitrella paten...   128   1e-28
tr|A7PVM2|A7PVM2_VITVI Chromosome chr9 scaffold_33, whole genome...   126   5e-28
tr|Q8LF02|Q8LF02_ARATH Putative uncharacterized protein (At1g730...   120   3e-26
tr|Q67XU4|Q67XU4_ARATH Putative uncharacterized protein At1g7309...   119   6e-26
tr|Q9SSL8|Q9SSL8_ARATH F3N23.29 protein OS=Arabidopsis thaliana ...    99   1e-19
tr|A8HZ02|A8HZ02_CHLRE Predicted protein OS=Chlamydomonas reinha...    41   0.034
tr|Q1V6H1|Q1V6H1_VIBAL Putative fimbrial assembly protein PilM O...    36   0.83 
tr|Q72KR0|Q72KR0_THET2 Metallo-beta-lactamase protein OS=Thermus...    34   3.1  
tr|Q87L62|Q87L62_VIBPA Putative fimbrial assembly protein PilM O...    34   4.1  
tr|A6B5V3|A6B5V3_VIBPA Tfp pilus assembly protein (Fragment) OS=...    34   4.1  
tr|Q22RS4|Q22RS4_TETTH TPR Domain containing protein OS=Tetrahym...    34   4.1  
tr|Q5SK42|Q5SK42_THET8 Metallo-beta-lactamase related protein OS...    33   5.4  
tr|B1ZRW3|B1ZRW3_OPITP Tetratricopeptide TPR_2 repeat protein OS...    33   9.1  
tr|Q5K8B9|Q5K8B9_CRYNE Expressed protein OS=Cryptococcus neoform...    33   9.1  
tr|Q55MF5|Q55MF5_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.1  

>tr|A9RF25|A9RF25_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65286 PE=4 SV=1
          Length = 508

 Score =  128 bits (322), Expect = 1e-28
 Identities = 80/207 (38%), Positives = 100/207 (48%), Gaps = 53/207 (25%)
 Frame = +2

Query: 2   GNEGEDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLW----------- 148
           GNEGE+P+RIL  GRK YLDELDVLTLL PP FL P     YN AA+L            
Sbjct: 153 GNEGEEPFRILADGRKAYLDELDVLTLLVPPPFLKPMSNKNYNHAAFLCGLSGVKLSLVA 212

Query: 149 ----------------KKIGDIPEERRHCLLDLLTPKHVANMWDITGQIYELPNRPFLEP 280
                           KKI  IPEERRH LLDLL P+H+  MW +T   YE P       
Sbjct: 213 KKFVETQSRQNMEMCRKKIAAIPEERRHRLLDLLEPRHITAMWKMTELRYEDPGLYLQNA 272

Query: 281 ANVLLGTQSELFMKPVTWTGK--------------------------AFNVSWPLSWFSE 382
           +  LL   +E  ++P+ WTG+                            +V W  ++ S 
Sbjct: 273 SRFLLNPAAEP-LQPLVWTGQKVEQTKIFCPCQVTAKRADSWNWVIWLVSVPWVFNFLSR 331

Query: 383 FQKALFLATDGSVYGRVITGGSMLRSM 463
           F+KA F + D  +YGRVITGG +L  +
Sbjct: 332 FKKAFFYSQDRELYGRVITGGGVLEGL 358


>tr|A7PVM2|A7PVM2_VITVI Chromosome chr9 scaffold_33, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025277001
           PE=4 SV=1
          Length = 321

 Score =  126 bits (317), Expect = 5e-28
 Identities = 70/147 (47%), Positives = 90/147 (61%)
 Frame = +2

Query: 14  EDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLWKKIGDIPEERRHCLL 193
           E PY +L  GR+VYLDE DV+  LDPP  LIP D  +YN A+YLWKKI DIPEERRH LL
Sbjct: 73  EKPYDVLSAGRRVYLDEEDVVAFLDPPKELIPLDPTSYNPASYLWKKIEDIPEERRHRLL 132

Query: 194 DLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSELFMKPVTWTGKAFNVSWPLSW 373
            LL P+ ++  W I G  +E P     + A+ LL ++  + M    W  +      P+SW
Sbjct: 133 HLLKPRLISRAWQIAGIRFEDPMLA-KKIASKLLSSEDGV-MSLEFWNCRKSGGPLPISW 190

Query: 374 FSEFQKALFLATDGSVYGRVITGGSML 454
            + F+KA+F   DG  YGR I GGS+L
Sbjct: 191 INFFKKAIFCCKDGKAYGRFI-GGSVL 216


>tr|Q8LF02|Q8LF02_ARATH Putative uncharacterized protein (At1g73090)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 306

 Score =  120 bits (302), Expect = 3e-26
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
 Frame = +2

Query: 14  EDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLWKKIGDIPEERRHCLL 193
           E PY  L TG++VY+DE DV+T LDPP  LIP D  +YN AAYLWKKI DIPEERRH LL
Sbjct: 61  EKPYETLPTGKRVYVDESDVVTFLDPPKELIPLDPASYNPAAYLWKKIEDIPEERRHHLL 120

Query: 194 DLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSELFMKPVTW-TGKAFNVSWPLS 370
            LL P+ ++  W+I    YE P    +  + +     +E+   PV + + +       +S
Sbjct: 121 QLLEPRLISRAWEIASTRYEDPKLAKMTASKIFSAGNAEI---PVEYFSCRTSQGPLIIS 177

Query: 371 WFSEFQKALFLATDGSVYGRVITG 442
           W + F+ ALF + +G +YGRV  G
Sbjct: 178 WINFFKMALFRSYNGQIYGRVCGG 201


>tr|Q67XU4|Q67XU4_ARATH Putative uncharacterized protein At1g73090
           OS=Arabidopsis thaliana GN=At1g73090 PE=2 SV=1
          Length = 306

 Score =  119 bits (299), Expect = 6e-26
 Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
 Frame = +2

Query: 14  EDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLWKKIGDIPEERRHCLL 193
           E PY  L TG++VY+DE DV+T LDPP  LIP D  +YN AAYLWKKI DIPEERRH LL
Sbjct: 61  EKPYETLPTGKRVYVDESDVVTFLDPPKELIPLDPASYNPAAYLWKKIEDIPEERRHHLL 120

Query: 194 DLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSELFMKPVTW-TGKAFNVSWPLS 370
            LL P+ ++  W I    YE P    +  + +     +E+   PV + + +       +S
Sbjct: 121 QLLEPRLISRAWKIASTRYEDPKLAKMTASKIFSAGNAEI---PVEYFSCRTSQGPLIIS 177

Query: 371 WFSEFQKALFLATDGSVYGRVITG 442
           W + F+ ALF + +G +YGRV  G
Sbjct: 178 WINFFKMALFRSYNGQIYGRVCGG 201


>tr|Q9SSL8|Q9SSL8_ARATH F3N23.29 protein OS=Arabidopsis thaliana
           GN=F3N23.29 PE=4 SV=1
          Length = 287

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 50/100 (50%), Positives = 62/100 (62%)
 Frame = +2

Query: 14  EDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLWKKIGDIPEERRHCLL 193
           E PY  L TG++VY+DE DV+T LDPP  LIP D  +YN AAYLWKKI DIPEERRH LL
Sbjct: 61  EKPYETLPTGKRVYVDESDVVTFLDPPKELIPLDPASYNPAAYLWKKIEDIPEERRHHLL 120

Query: 194 DLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSEL 313
            LL P+     W+I    YE P    +  + +     +E+
Sbjct: 121 QLLEPR----AWEIASTRYEDPKLAKMTASKIFSAGNAEI 156


>tr|A8HZ02|A8HZ02_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_206098 PE=4 SV=1
          Length = 419

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = +2

Query: 101 LIPSDANAYNQAAYLWKKIGDIPEERRHCLLDLLTPKHVANMWDITGQIYELPNRPFLE 277
           L P   +AYN    LW +I  IP E RH LLD L P  + ++W  +   Y L     LE
Sbjct: 101 LRPLHPSAYNPFYELWTRIAKIPPEERHRLLDELEPGSLRSVWKASMARYVLNEAASLE 159


>tr|Q1V6H1|Q1V6H1_VIBAL Putative fimbrial assembly protein PilM
           OS=Vibrio alginolyticus 12G01 GN=V12G01_14765 PE=4 SV=1
          Length = 338

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2   GNEGEDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQA-AYLWKKIGD-IPEE 175
           G  G D Y++  T + V    +D L      S L P   + ++Q+  ++WK   D  P++
Sbjct: 128 GQSGSDSYQVFATRKDVVEGRVDALQ----KSGLKPVLVDVHSQSLGHIWKLTADRFPDK 183

Query: 176 RRHCLLDLLTPKHVANMWDITGQIY 250
            ++CLLD+ T      M+   G+++
Sbjct: 184 NKYCLLDIGTLSSSFTMFTEQGELF 208


>tr|Q72KR0|Q72KR0_THET2 Metallo-beta-lactamase protein OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=TT_C0458 PE=4 SV=1
          Length = 299

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 23  YRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQAAYLWKKIGDIPEERRHCLLD 196
           +R+ E G  VY+       L+DP   L  ++    +Q   LW ++  IPEER   L D
Sbjct: 72  WRLAELGATVYVHPRGAPHLVDPSRLLASAERIYGDQLKALWGEVRGIPEERVRLLAD 129


>tr|Q87L62|Q87L62_VIBPA Putative fimbrial assembly protein PilM
           OS=Vibrio parahaemolyticus GN=VP2750 PE=4 SV=1
          Length = 338

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   GNEGEDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQA-AYLWKKIGD-IPEE 175
           G  G D Y++  T + V    ++ L      S L P   + ++Q+  ++WK   +  PE+
Sbjct: 128 GMRGTDSYQVFATRKDVVESRVEALQ----QSGLKPVLVDVHSQSLGHIWKLAAERFPEK 183

Query: 176 RRHCLLDLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSE 310
            ++CLLD+ +      M+   G+++   ++ F     + +GT  E
Sbjct: 184 NKYCLLDIGSLASSFTMFTEQGELF---HKEFACGTRISMGTSQE 225


>tr|A6B5V3|A6B5V3_VIBPA Tfp pilus assembly protein (Fragment)
           OS=Vibrio parahaemolyticus AQ3810 GN=A79_1365 PE=4 SV=1
          Length = 284

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   GNEGEDPYRILETGRKVYLDELDVLTLLDPPSFLIPSDANAYNQA-AYLWKKIGD-IPEE 175
           G  G D Y++  T + V    ++ L      S L P   + ++Q+  ++WK   +  PE+
Sbjct: 128 GMRGTDSYQVFATRKDVVESRVEALQ----QSGLKPVLVDVHSQSLGHIWKLAAERFPEK 183

Query: 176 RRHCLLDLLTPKHVANMWDITGQIYELPNRPFLEPANVLLGTQSE 310
            ++CLLD+ +      M+   G+++   ++ F     + +GT  E
Sbjct: 184 NKYCLLDIGSLASSFTMFTEQGELF---HKEFACGTRISMGTSQE 225