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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916617
Clone id YMU001_000089_F06
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAACACGCGTCAACCTTTGCGTGATTTGTCAACCTTCATCTCAAGCAGTCAGCAGTAA
TATTAAACAATGGTTTTTCCATGGCTTCCTTTCTGCAAGATGCGACTAAATCTCTCTGTG
AAGGCTTGCCGCATATAATCTCCTTTACAAACCACCCGTTTTAAGAAAGACTTTGTGTGT
GCTTAAAAAGACTAAGATCAGAGAAATACTCTTCTTTAGCGTGACCCCACAGCTCAAGAC
CATTATACCTTCTTCAAGGGCTTATAAATTATCAGCAGCTACCCAAGTGTGATCACTGCT
GATGCATCTGCTGTTGCCGCAATTGCTCTCGTTGTGGTCCACAGAAGGCTTGCACACTCA
CGGATGGAACGTTGTCCTTATACGCTGCCATGCTCACAGGTCAGTTGCATTGGAGATTGC
CAGCGATTTCATTGTGCTTGTTGATGGAGTAACTTTTCATGTGCACAAGGTACGCAACAT
CATTTTCATCACTCTGAAATGTTGTGTGTTTGCAGTGCCCA
■■Homology search results ■■ -
sp_hit_id P37088
Definition sp|P37088|SCNNA_HUMAN Amiloride-sensitive sodium channel subunit alpha OS=Homo sapiens
Align length 43
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916617|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F06.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37088|SCNNA_HUMAN Amiloride-sensitive sodium channel subunit...    33   1.1  
sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus...    30   5.3  
sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus no...    30   5.3  
sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus mus...    30   5.3  
sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sa...    30   5.3  
sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Dani...    30   5.3  
sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Dani...    30   5.3  
sp|Q00217|TPSB_ASPNG Alpha,alpha-trehalose-phosphate synthase [U...    30   6.9  
sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus...    30   6.9  
sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus no...    30   6.9  
sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo a...    30   6.9  
sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrof...    30   6.9  
sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus mus...    30   6.9  
sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sa...    30   6.9  
sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus ...    30   6.9  
sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos tau...    30   6.9  

>sp|P37088|SCNNA_HUMAN Amiloride-sensitive sodium channel subunit
           alpha OS=Homo sapiens GN=SCNN1A PE=1 SV=1
          Length = 669

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 364 MERCPYTLPCSQVSCIGDCQRFHCAC*WSNFSCAQGTQHHFHH 492
           + R P TLP  +   +G+   F  AC ++  SC Q    HFHH
Sbjct: 260 LSRLPETLPSLEEDTLGN---FIFACRFNQVSCNQANYSHFHH 299


>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus
           laevis GN=rxra PE=1 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 330 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 360


>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus
           norvegicus GN=Rxra PE=2 SV=1
          Length = 467

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 309 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 339


>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus
           musculus GN=Rxra PE=1 SV=1
          Length = 467

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 309 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 339


>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo
           sapiens GN=RXRA PE=1 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 304 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 334


>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio
           rerio GN=rxrab PE=2 SV=1
          Length = 379

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 221 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 251


>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio
           rerio GN=rxraa PE=2 SV=2
          Length = 430

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRS+A++   D I+L  G+  HVH+
Sbjct: 272 GWNELLIASFSHRSIAVK---DGILLATGL--HVHR 302


>sp|Q00217|TPSB_ASPNG Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 2 OS=Aspergillus niger GN=tpsB PE=3 SV=1
          Length = 480

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +2

Query: 134 YNLLYKPPVLRKTLCVLKKTKIREILFFSVTPQLKTIIPSSRAYKL 271
           Y+L+  P VLR+ L  L K  IR I FF  TP      PSS  Y++
Sbjct: 152 YHLMLLPEVLREELAALGKNNIR-IGFFLHTP-----FPSSEIYRI 191


>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus
           laevis GN=rxrg PE=2 SV=1
          Length = 470

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRSV+++   D I+L  G+  HVH+
Sbjct: 312 GWNELLIASFSHRSVSVQ---DGILLATGL--HVHR 342


>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus
           norvegicus GN=Rxrg PE=2 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 362 GWNVVLIRCHAHRSVALEIASDFIVLVDGVTFHVHK 469
           GWN +LI   +HRSV+++   D I+L  G+  HVH+
Sbjct: 305 GWNELLIASFSHRSVSVQ---DGILLATGL--HVHR 335
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916617|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F06.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******