BP916621
Clone id YMU001_000089_F10
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAAAGATTTAAGTACTGCTGTTGCAGGTAGAGGAAAATTTCTCGAGACGCAAAACATTTC
GTGCCGTGGCCGTCCTCTGAGAACCCCCGAGGTTCGCGATTTCTCCTTAGAAAGAGCCAC
TGTTTGTAGCAACGAAAACTTCAGGAGGAGAATCTTGAGAGCCTTTACTATGGCTGGTGA
GCCTACATCAGAGGGGGAGGTGAAGGGAGGTGAGCTTTTGCTTTGTGGCAGCACGGCGTG
GGATCACATTGGTCGCAAGACCCCGAATGACAGCATTGGCGCAGCCTTGCCTTCGCCATC
TCGTCTCCGACCTCTTATGGGTGTTCCCATTGTATATGTAGCTTCTGGTTCTGCTTCATG
CCATTGTGT
■■Homology search results ■■ -
sp_hit_id Q52KW8
Definition sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis
Align length 64
Score (bit) 42.0
E-value 0.001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916621|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F10.
(369 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=r... 42 0.001
sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1 39 0.006
sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2 39 0.006
sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2... 34 0.26
sp|Q3TRM4|PLPL6_MOUSE Neuropathy target esterase OS=Mus musculus... 33 0.44
sp|Q1LAN7|EFG2_RALME Elongation factor G 2 OS=Ralstonia metallid... 30 3.7
sp|A4VN44|CAPP_PSEU5 Phosphoenolpyruvate carboxylase OS=Pseudomo... 30 3.7
sp|Q74DK5|G6PI_GEOSL Glucose-6-phosphate isomerase OS=Geobacter ... 29 6.4
sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 O... 29 8.3
sp|Q7W455|EFG2_BORPA Elongation factor G 2 OS=Bordetella paraper... 29 8.3
sp|Q7WFL2|EFG2_BORBR Elongation factor G 2 OS=Bordetella bronchi... 29 8.3

>sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=rcc2
PE=2 SV=1
Length = 513

Score = 42.0 bits (97), Expect = 0.001
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2

Query: 191 EGEVKGGELLLCGSTAWDHIGRK-TPND-----SIGAALPSPSRLRPLMGVPIVYVASGS 352
EG G+LL+ G+T WD IGRK P ++G L P R L GV + VASGS
Sbjct: 89 EGSKAKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLTGVQVRSVASGS 148

Query: 353 ASCH 364
+ H
Sbjct: 149 CAAH 152


>sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1
Length = 520

Score = 39.3 bits (90), Expect = 0.006
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2

Query: 191 EGEVKGGELLLCGSTAWDHIGRK-TPND-----SIGAALPSPSRLRPLMGVPIVYVASGS 352
EG G+LL+ G+T WD IGRK P ++G L P R L GV + V SGS
Sbjct: 96 EGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLSGVRVRTVVSGS 155

Query: 353 ASCH 364
+ H
Sbjct: 156 CAAH 159


>sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2
Length = 522

Score = 39.3 bits (90), Expect = 0.006
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2

Query: 191 EGEVKGGELLLCGSTAWDHIGRK-TPND-----SIGAALPSPSRLRPLMGVPIVYVASGS 352
EG G+LL+ G+T WD IGRK P ++G L P R L GV + V SGS
Sbjct: 98 EGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGS 157

Query: 353 ASCH 364
+ H
Sbjct: 158 CAAH 161


>sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2
PE=2 SV=1
Length = 495

Score = 33.9 bits (76), Expect = 0.26
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2

Query: 209 GELLLCGSTAWDHIGRK-TPND-----SIGAALPSPSRLRPLMGVPIVYVASGSASCH 364
G+LL+ G+T WD IGRK P ++G L P R L V + V SG + H
Sbjct: 77 GQLLIFGATNWDLIGRKEVPKQQAAFRNLGQNLWGPHRYGCLSDVQVSCVVSGPCAAH 134


>sp|Q3TRM4|PLPL6_MOUSE Neuropathy target esterase OS=Mus musculus
GN=Pnpla6 PE=2 SV=2
Length = 1355

Score = 33.1 bits (74), Expect = 0.44
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +2

Query: 77 LRTPEVRDFSLERATVCSNENFRRRI--LRAFTMAGEPTSEGEVKGGELLLCGS----TA 238
+R V +L +NE F I LR F G PT V+G + ++ S T+
Sbjct: 305 VRLQRVTFLALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRVVSTSGTEDTS 364

Query: 239 WDHIGRKTPNDSIGAALPSPS 301
+ GR P DSIGA LP P+
Sbjct: 365 KETSGR--PLDSIGAPLPGPA 383


>sp|Q1LAN7|EFG2_RALME Elongation factor G 2 OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=fusA2 PE=3 SV=1
Length = 702

Score = 30.0 bits (66), Expect = 3.7
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Frame = +2

Query: 89 EVRDFSLERATVCSNENFRRRILRAFTMAGEPTSEGEVK--------GGEL--LLCGSTA 238
E D +E A S E R + +GEP SE E+K GE+ +LCGS A
Sbjct: 217 EWHDKMVEAAAEASEELLERYL------SGEPLSEEEIKTGLRKRTVAGEIVPMLCGS-A 269

Query: 239 WDHIGRKTPNDSIGAALPSPSRLRPLMG 322
+ + G + D++ LPSP + ++G
Sbjct: 270 FKNKGVQAMLDAVIDYLPSPVDVPAILG 297


>sp|A4VN44|CAPP_PSEU5 Phosphoenolpyruvate carboxylase OS=Pseudomonas
stutzeri (strain A1501) GN=ppc PE=3 SV=1
Length = 879

Score = 30.0 bits (66), Expect = 3.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3

Query: 307 ETRWRRQGCANAVIRGLATNVIPRRAATKQKLTSLHLPL*C---RLTSHSKGSQDSPPEV 137
E +W N++ + + NV+ + AT +LT LHLPL R S G +D P V
Sbjct: 204 EAKWGFAAIENSLWKAVP-NVLRQTDATLHRLTGLHLPLEAAPIRFASWMGGDRDGNPNV 262


>sp|Q74DK5|G6PI_GEOSL Glucose-6-phosphate isomerase OS=Geobacter
sulfurreducens GN=pgi PE=3 SV=1
Length = 529

Score = 29.3 bits (64), Expect = 6.4
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2

Query: 161 AFTMAGEPTSEGEVKGGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYV 340
A T AG GG LC WD +G +T S LP+ L G+PI
Sbjct: 209 AVTGAGSELDRTAEAGG--WLCRFPMWDWVGGRTSETSAVGLLPA-----ALQGIPIRDF 261

Query: 341 ASGSASC 361
G+ +C
Sbjct: 262 LDGARTC 268


>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1
OS=Danio rerio GN=notch1a PE=2 SV=1
Length = 2437

Score = 28.9 bits (63), Expect = 8.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -1

Query: 309 RRRDGEGKAAPMLSFGVLRPM*S----HAVLPQSKSSPPFTSPSDVGSP 175
+++ G+GK ++ GVL P+ S H L S P TSP P
Sbjct: 2162 KKKSGDGKNGGIMEVGVLSPVDSLESPHGYLSDVSSPPMMTSPFQQSPP 2210


>sp|Q7W455|EFG2_BORPA Elongation factor G 2 OS=Bordetella
parapertussis GN=fusA2 PE=3 SV=1
Length = 705

Score = 28.9 bits (63), Expect = 8.3
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 10/61 (16%)
Frame = +2

Query: 170 MAGEPTSEGEVKGG--------EL--LLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLM 319
++G+P SE E+K G E+ +LCGS A+ + G + D++ LPSP+ + ++
Sbjct: 236 LSGQPLSEDEIKSGLRARTVANEIVPMLCGS-AFKNKGVQAMLDAVIDYLPSPADVPAII 294

Query: 320 G 322
G
Sbjct: 295 G 295


tr_hit_id A7NT00
Definition tr|A7NT00|A7NT00_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera
Align length 72
Score (bit) 73.2
E-value 6.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916621|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_F10.
(369 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7NT00|A7NT00_VITVI Chromosome chr18 scaffold_1, whole genome... 73 6e-12
tr|A8IXV7|A8IXV7_BRACM UVB-resistance protein UVR8 OS=Brassica c... 71 3e-11
tr|A9RHR1|A9RHR1_PHYPA Predicted protein OS=Physcomitrella paten... 69 2e-10
tr|Q9FXI6|Q9FXI6_ARATH F6F9.7 protein OS=Arabidopsis thaliana GN... 66 8e-10
tr|Q8L7B6|Q8L7B6_ARATH Putative uncharacterized protein At1g1988... 64 4e-09
tr|B6TA37|B6TA37_MAIZE Protein RCC2 OS=Zea mays PE=2 SV=1 60 7e-08
tr|Q0J9B4|Q0J9B4_ORYSJ Os04g0662800 protein OS=Oryza sativa subs... 59 1e-07
tr|B8AVY2|B8AVY2_ORYSI Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|Q7XM19|Q7XM19_ORYSJ OSJNBa0084K01.12 protein (Putative unchar... 49 1e-04
tr|A8JEA7|A8JEA7_CHLRE Predicted protein OS=Chlamydomonas reinha... 45 0.002
tr|A8N885|A8N885_COPC7 Putative uncharacterized protein OS=Copri... 45 0.002
tr|B6L8K8|B6L8K8_BRAFL Putative uncharacterized protein OS=Branc... 44 0.003
tr|B6L8J5|B6L8J5_BRAFL Putative uncharacterized protein OS=Branc... 44 0.003
tr|A7RL61|A7RL61_NEMVE Predicted protein OS=Nematostella vectens... 43 0.009
tr|A2AWQ3|A2AWQ3_MOUSE Regulator of chromosome condensation 2 OS... 39 0.099
tr|A2AWQ2|A2AWQ2_MOUSE Regulator of chromosome condensation 2 (F... 39 0.099
tr|A6QPV1|A6QPV1_BOVIN RCC2 protein OS=Bos taurus GN=RCC2 PE=2 SV=1 39 0.099
tr|A6QL85|A6QL85_BOVIN RCC2 protein OS=Bos taurus GN=RCC2 PE=2 SV=1 39 0.099
tr|A5PLK7|A5PLK7_HUMAN RCC2 protein (Fragment) OS=Homo sapiens G... 39 0.099
tr|Q5F3B6|Q5F3B6_CHICK Putative uncharacterized protein (Fragmen... 39 0.17
tr|B0DD23|B0DD23_LACBS Predicted protein (Fragment) OS=Laccaria ... 37 0.49
tr|A4S9S9|A4S9S9_OSTLU Predicted protein (Fragment) OS=Ostreococ... 36 1.1
tr|B5X3B1|B5X3B1_SALSA RCC2 homolog OS=Salmo salar GN=RCC2 PE=2 ... 34 3.2
tr|B5X1C8|B5X1C8_SALSA RCC2 homolog OS=Salmo salar GN=RCC2 PE=2 ... 34 4.2
tr|Q4Q5G3|Q4Q5G3_LEIMA Putative uncharacterized protein OS=Leish... 34 4.2
tr|Q7UHV1|Q7UHV1_RHOBA Putative uncharacterized protein OS=Rhodo... 33 5.4
tr|B6R522|B6R522_9RHOB AgaE protein OS=Pseudovibrio sp. JE062 GN... 33 5.4
tr|Q0DM52|Q0DM52_ORYSJ Os03g0827600 protein (Fragment) OS=Oryza ... 33 5.4
tr|Q1V6M9|Q1V6M9_VIBAL NrfF OS=Vibrio alginolyticus 12G01 GN=V12... 27 6.9
tr|Q4T769|Q4T769_TETNG Chromosome undetermined SCAF8259, whole g... 33 7.1

>tr|A7NT00|A7NT00_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014479001
PE=4 SV=1
Length = 542

Score = 73.2 bits (178), Expect = 6e-12
Identities = 40/72 (55%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Frame = +2

Query: 170 MAGEPTSEGEV------KGGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPI 331
MA SE +V KGGELLLCGST WD IGR+ ++ L SP+RLRPL+GV I
Sbjct: 1 MAAAVESENKVEEKKSEKGGELLLCGSTCWDAIGRR--KGTLEGNLVSPTRLRPLVGVDI 58

Query: 332 VYVASGSASCHC 367
+VA+G ASCHC
Sbjct: 59 RFVAAGCASCHC 70


>tr|A8IXV7|A8IXV7_BRACM UVB-resistance protein UVR8 OS=Brassica
campestris PE=2 SV=1
Length = 537

Score = 70.9 bits (172), Expect = 3e-11
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +2

Query: 197 EVKGGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYVASGSASCHC 367
E KGGELL CG+T+WD +GR+ + L SP+RLRPL+GV I +VASG ASCHC
Sbjct: 16 EEKGGELLFCGATSWDIVGRRK---GVEGNLLSPTRLRPLLGVNIRFVASGCASCHC 69


>tr|A9RHR1|A9RHR1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_114453 PE=4 SV=1
Length = 436

Score = 68.6 bits (166), Expect = 2e-10
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Frame = +2

Query: 176 GEPTSEGEVK----GGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYVA 343
G S+ E K GELL CGS++W+ IG+K D LPSP+RL L GVPIV+VA
Sbjct: 11 GGKKSQEEAKPSRPAGELLFCGSSSWETIGKKQTGDG-STLLPSPTRLSVLQGVPIVFVA 69

Query: 344 SGSASCHC 367
GS +CHC
Sbjct: 70 GGSTACHC 77


>tr|Q9FXI6|Q9FXI6_ARATH F6F9.7 protein OS=Arabidopsis thaliana
GN=F6F9.7 PE=4 SV=1
Length = 521

Score = 66.2 bits (160), Expect = 8e-10
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +2

Query: 161 AFTMAGEPTSEGEVKGGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYV 340
A + + E KGGELL CG+TAWD IG++ ++ L SP+RLRPL+GV I +V
Sbjct: 4 AMNSSEKKDESSEEKGGELLFCGATAWDIIGKR--KGAMEGNLVSPTRLRPLVGVNIRFV 61

Query: 341 ASGSASCHC 367
A+G AS HC
Sbjct: 62 ATGCASFHC 70


>tr|Q8L7B6|Q8L7B6_ARATH Putative uncharacterized protein At1g19880
OS=Arabidopsis thaliana GN=At1g19880 PE=2 SV=1
Length = 538

Score = 63.9 bits (154), Expect = 4e-09
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +2

Query: 161 AFTMAGEPTSEGEVKGGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYV 340
A + + E KG ELL CG+TAWD IG++ ++ L SP+RLRPL+GV I +V
Sbjct: 4 AMNSSEKKDESSEEKGSELLFCGATAWDIIGKR--KGAMEGNLVSPTRLRPLVGVNIRFV 61

Query: 341 ASGSASCHC 367
A+G AS HC
Sbjct: 62 ATGCASFHC 70


>tr|B6TA37|B6TA37_MAIZE Protein RCC2 OS=Zea mays PE=2 SV=1
Length = 549

Score = 59.7 bits (143), Expect = 7e-08
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +2

Query: 206 GGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRLRPLMGVPIVYVASGSASCHC 367
G ELL CG T++D +GRK + G L SP+RLRPL+GV I +VASG +CHC
Sbjct: 31 GWELLYCGGTSFDAMGRKVVGGAQGN-LVSPTRLRPLVGVDIRFVASGCTACHC 83


>tr|Q0J9B4|Q0J9B4_ORYSJ Os04g0662800 protein OS=Oryza sativa subsp.
japonica GN=Os04g0662800 PE=4 SV=1
Length = 549

Score = 58.9 bits (141), Expect = 1e-07
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 15/80 (18%)
Frame = +2

Query: 173 AGEP-----TSEGEVK----------GGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRL 307
+GEP +EGE K GGELL CG+T ++ +GRK + G L SP+R+
Sbjct: 4 SGEPEKVPAAAEGEEKADGAKDAAGSGGELLYCGATNFETMGRKVVGGAQGN-LVSPTRM 62

Query: 308 RPLMGVPIVYVASGSASCHC 367
R LMGV I +VASG +CHC
Sbjct: 63 RSLMGVDIRFVASGCTACHC 82


>tr|B8AVY2|B8AVY2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_17792 PE=4 SV=1
Length = 549

Score = 58.9 bits (141), Expect = 1e-07
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 15/80 (18%)
Frame = +2

Query: 173 AGEP-----TSEGEVK----------GGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRL 307
+GEP +EGE K GGELL CG+T ++ +GRK + G L SP+R+
Sbjct: 4 SGEPEKVPAAAEGEEKADGAKDAAGSGGELLYCGATNFETMGRKVVGGAQGN-LVSPTRM 62

Query: 308 RPLMGVPIVYVASGSASCHC 367
R LMGV I +VASG +CHC
Sbjct: 63 RSLMGVDIRFVASGCTACHC 82


>tr|Q7XM19|Q7XM19_ORYSJ OSJNBa0084K01.12 protein (Putative
uncharacterized protein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0084K01.12 PE=4 SV=2
Length = 521

Score = 49.3 bits (116), Expect = 1e-04
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 15/77 (19%)
Frame = +2

Query: 173 AGEP-----TSEGEVK----------GGELLLCGSTAWDHIGRKTPNDSIGAALPSPSRL 307
+GEP +EGE K GGELL CG+T ++ +GRK + G L SP+R+
Sbjct: 4 SGEPEKVPAAAEGEEKADGAKDAAGSGGELLYCGATNFETMGRKVVGGAQGN-LVSPTRM 62

Query: 308 RPLMGVPIVYVASGSAS 358
R LMGV I +VASG ++
Sbjct: 63 RSLMGVDIRFVASGCSA 79


>tr|A8JEA7|A8JEA7_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_194222 PE=4 SV=1
Length = 463

Score = 45.1 bits (105), Expect = 0.002
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +2

Query: 170 MAGEPTSEGEVKGGELLLCGSTAWDHIGR---KTPNDSIGAA-----LPSPSRLRPLMGV 325
MA E + +GG LL CG T + +GR KT + + L P+RL+ V
Sbjct: 1 MAAAAPEEPKWEGGVLLFCGGTDFAQLGRTGGKTRKEDLDKESQYPNLLRPTRLKTFNDV 60

Query: 326 PIVYVASGSASCHC 367
I+++A+G A+CHC
Sbjct: 61 KIMFIAAGPAACHC 74