BP916624
Clone id YMU001_000089_G02
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TAACCACCGAAGTTTCTTTTAAGCCACCACTAAAGAGAGTTCTGCTACTCCTCTTTTGCT
CCTCGAGTCCCAAGAACGTTCCCTTACTTGTACAGGAATCAGATAGGATGCTTTATGCAA
GTGAAGTGATACATATAATACAAATGTTACCCATTTTTGAGAAACTATGAACACAAATTT
GCTTTAGCACAATAATTCGGTGGAGCTCACTTTCCATGCCTAGTCCCCCATTGGTTGAAA
CTGTTAAAAGTCCCCTGTTCTCTTCATGGTGAGCCTCCACTTTGGCCATTCAGAGGCAAG
GCTCTACAGAGGACTACTTTAGTTTGGAAAATGTAACCTCCTCAGCACCATCTGACTGCA
TGCCAGATGAACTACTTCGGAAATCTTGCTACTTCTGATGATGGCCTTGACAGCTAACCC
TGTGTCTTTCCCAAATGACAAGGGTTTAGGGTTGAGGGTTGGCTTGGAAACGATGCCTTC
AATTGTTAAGATAACTTACCTTCTCTGACTCCTTA
■■Homology search results ■■ -
sp_hit_id Q3A668
Definition sp|Q3A668|RIBB_PELCD 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Align length 136
Score (bit) 31.2
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916624|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_G02.
(515 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3A668|RIBB_PELCD 3,4-dihydroxy-2-butanone 4-phosphate syntha... 31 3.0
sp|Q5DU31|ICEF1_MOUSE Interactor protein for cytohesin exchange ... 31 3.0
sp|P33287|PDC_NEUCR Pyruvate decarboxylase OS=Neurospora crassa ... 30 5.1

>sp|Q3A668|RIBB_PELCD 3,4-dihydroxy-2-butanone 4-phosphate synthase
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=ribB PE=3 SV=1
Length = 217

Score = 31.2 bits (69), Expect = 3.0
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Frame = +3

Query: 18 FKPPLKRVLLLLFCSSSPKNVPLLVQESDR-----MLYASEVIHIIQMLPIFEKL*TQIC 182
F PL+RV L + + V LLV + +R +++ +E I QM + + +C
Sbjct: 9 FGTPLERVHLAIDRLRQGRGV-LLVDDENRENEGDLIFPAETITPAQMAMMIRECSGIVC 67

Query: 183 FS-TIIRWSSLSMPSPPLVETVKSPLFSSW*ASTLAIQ-RQGSTEDYFSLENVTS---SA 347
T + L +P + V ++ A TL+I+ RQG T + + VT+ +
Sbjct: 68 LCLTEDKLKQLELP-----QMVSDNTSANQTAFTLSIEARQGVTTGVSAADRVTTIRTAV 122

Query: 348 PSDCMPDELLRKSCYF 395
DC PD+L R F
Sbjct: 123 ADDCRPDDLARPGHVF 138


>sp|Q5DU31|ICEF1_MOUSE Interactor protein for cytohesin exchange
factors 1 OS=Mus musculus GN=Ipcef1 PE=2 SV=2
Length = 406

Score = 31.2 bits (69), Expect = 3.0
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3

Query: 207 SLSMPSPPLVETVKSPLFSSW*ASTLAIQRQGSTEDYFSLENVTSSAPS 353
++ P PP T SP+ + W AS+ + +R+ ++ + SLEN T APS
Sbjct: 135 AVEAPPPPYASTTSSPVAAQW-ASSSSPKRRETSCSFSSLEN-TVKAPS 181


>sp|P33287|PDC_NEUCR Pyruvate decarboxylase OS=Neurospora crassa
GN=cfp PE=1 SV=1
Length = 570

Score = 30.4 bits (67), Expect = 5.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3

Query: 75 NVPLLVQESDRMLYASEVIHIIQMLPIFEKL*TQICF--STIIRWSSLSMPSPPLVETVK 248
N+PL+ + D + + ++M L TQ+ F ST+I + L P PP V T +
Sbjct: 306 NIPLMTVDMDHVTFPGAHFSRVRMCEFLSHLATQVTFNDSTMIEYKRLK-PDPPHVHTAE 364


tr_hit_id A0LNP0
Definition tr|A0LNP0|A0LNP0_SYNFM DEAD/DEAH box helicase domain protein OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Align length 34
Score (bit) 33.9
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916624|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_G02.
(515 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0LNP0|A0LNP0_SYNFM DEAD/DEAH box helicase domain protein OS=... 34 4.9
tr|A6BYS7|A6BYS7_9PLAN Serine/threonine kinase Pkn10 OS=Planctom... 34 4.9

>tr|A0LNP0|A0LNP0_SYNFM DEAD/DEAH box helicase domain protein
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=Sfum_3369 PE=4 SV=1
Length = 843

Score = 33.9 bits (76), Expect = 4.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1

Query: 148 YPFLRNYEHKFALAQ*FGGAHFPCLVPHWLKLLK 249
+PFLRN++H L + GAH +PHW LL+
Sbjct: 271 FPFLRNHQHLSILRETAVGAHHGGQLPHWKLLLE 304


>tr|A6BYS7|A6BYS7_9PLAN Serine/threonine kinase Pkn10
OS=Planctomyces maris DSM 8797 GN=PM8797T_27879 PE=4
SV=1
Length = 1332

Score = 33.9 bits (76), Expect = 4.9
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -3

Query: 138 LYVSLHLHKASYLI---PVQVRERSWDSRSKRGVAELSLVVA*KKLRW 4
L+V L+ H+A L+ P+ V+ +W + K G ELSL + ++L W
Sbjct: 443 LHVILNDHRAQILLDGQPLDVKSGTWSGKQKAGSHELSLQIGDQRLPW 490