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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916626
Clone id YMU001_000089_G04
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAAGAATATACCGACGAGCTGCTTTATCACGATCGTTGTCAATCCGTATAGGCAACATT
CCAATCTTCAAATATAGGTCCTTCAGTGATAAGCACATTATCATTATCCGTATCAACAGG
CTGAGGCGGACAAACACGATTTCCGAGAACAACATCGGAGAGTGCATCGCCTTCAAGAAT
TAACAACATCTTTGCTTTCCAGCCTGGAAATCCTTGACCTTGGAAAGGAGGAACAGAACG
CTGGCCAAAAGGAAATCCGTTGACGAGAATATTCATAGCCATATCTTGTTGCGAGAATAC
GTATAAGATAAGATCGCAGAATCTGCACACCATATATGGTGAAGGCCACAATTGAGAATG
AGAGAGATATGAGTACTACATTCTGTCAACGATAAACGTAAGAAGGATGCTCAAGGAACG
TCCAAAGATGTGAGAGACGTCACCCAAAAAAGGGAGGGTAAAGGAGACGTTAATAATAAA
CGAGTCCTCAAAATAGAGTGGCGTGAGACGCAAGATTGA
■■Homology search results ■■ -
sp_hit_id Q7TV01
Definition sp|Q7TV01|SYL_PROMM Leucyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313)
Align length 63
Score (bit) 31.2
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916626|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_G04.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TV01|SYL_PROMM Leucyl-tRNA synthetase OS=Prochlorococcus ma...    31   3.1  
sp|A2C9U0|SYL_PROM3 Leucyl-tRNA synthetase OS=Prochlorococcus ma...    31   3.1  
sp|Q9ABT9|KUP_CAUCR Probable potassium transport system protein ...    31   4.0  
sp|Q1MEX2|KUP2_RHIL3 Probable potassium transport system protein...    31   4.0  
sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=...    30   5.2  
sp|Q5N006|SYL_SYNP6 Leucyl-tRNA synthetase OS=Synechococcus sp. ...    30   9.0  
sp|Q31LW9|SYL_SYNE7 Leucyl-tRNA synthetase OS=Synechococcus elon...    30   9.0  
sp|Q2K711|KUP2_RHIEC Probable potassium transport system protein...    30   9.0  

>sp|Q7TV01|SYL_PROMM Leucyl-tRNA synthetase OS=Prochlorococcus
           marinus (strain MIT 9313) GN=leuS PE=3 SV=1
          Length = 878

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 330 VCRFCDLILYVFSQQDMAMNILVNGFPFGQRSVPPFQGQGFPGWKAKMLLILEGDALSDV 151
           V  FCDLI  +  +   A +    G P G + + P  G+  P W A  +L    D  S  
Sbjct: 296 VTAFCDLISQLSVKDRTAEDQPKRGVPIGAQVINPVNGESLPVWIADYVL---ADYGSGA 352

Query: 150 VLG 142
           V+G
Sbjct: 353 VMG 355


>sp|A2C9U0|SYL_PROM3 Leucyl-tRNA synthetase OS=Prochlorococcus
           marinus (strain MIT 9303) GN=leuS PE=3 SV=1
          Length = 878

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 330 VCRFCDLILYVFSQQDMAMNILVNGFPFGQRSVPPFQGQGFPGWKAKMLLILEGDALSDV 151
           V  FCDLI  +  +   A +    G P G + + P  G+  P W A  +L    D  S  
Sbjct: 296 VTAFCDLISQLSVKDRTAEDQPKRGVPIGAQVINPVNGESLPVWIADYVL---ADYGSGA 352

Query: 150 VLG 142
           V+G
Sbjct: 353 VMG 355


>sp|Q9ABT9|KUP_CAUCR Probable potassium transport system protein kup
           OS=Caulobacter crescentus GN=kup PE=3 SV=2
          Length = 665

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 306 LYVFSQQDMAMNILVNGFPFGQRSVPPFQGQGFPGWKAKMLLILEGDA 163
           L V  +Q +  +I+   F  G+RS+ P    G P W+ ++ + L  +A
Sbjct: 595 LAVCRKQGLKFDIMATSFFLGRRSIVPSANSGMPLWQDRLFIYLMRNA 642


>sp|Q1MEX2|KUP2_RHIL3 Probable potassium transport system protein
           kup 2 OS=Rhizobium leguminosarum bv. viciae (strain
           3841) GN=kup2 PE=3 SV=1
          Length = 633

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 270 ILVNGFPFGQRSVPPFQGQGFPGWKAKMLLILEGDAL 160
           I+   F  G+R++      G PGW+ ++ ++LEG A+
Sbjct: 575 IMKTSFYLGRRNLVRTPNTGLPGWQERIFVVLEGFAI 611


>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1
           OS=Dictyostelium discoideum GN=rfc1 PE=3 SV=1
          Length = 1401

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +2

Query: 2   EEYTDELLYHDRCQSV*ATFQSSNIGPXXXXXXXXXXXXXXXGQTRFPRTTSESASPSRI 181
           E+  DE LY  +  S    F S +I P                 T+ P  TS +A+P++ 
Sbjct: 568 EDEGDEPLYKQQSSS----FGSGSINPTATPTTP----------TKKPAATSTNATPTKK 613

Query: 182 NNIFAFQPGNP*PWKGGTERWPKG 253
            N F +  G P P   G++  P+G
Sbjct: 614 PNPFMYMNGRPTPPNKGSKPRPQG 637


>sp|Q5N006|SYL_SYNP6 Leucyl-tRNA synthetase OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuS
           PE=3 SV=1
          Length = 865

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
 Frame = -1

Query: 258 GFPFGQRSVPPFQGQGFPGWKAKMLLILEGDAL---------SDVVLGNRV-CPPQPVDT 109
           G P G     PF GQ  P W A  +L+  G             D     R   P QPV  
Sbjct: 321 GVPTGGFVTNPFTGQAVPIWIADYVLVEYGTGAVMGVPAHDSRDFAFAQRYGLPVQPV-- 378

Query: 108 DNDNVLITEGPIFEDWNVAYTD 43
               +  TEG I E W   +T+
Sbjct: 379 ----IQPTEGAIAEPWPAPFTE 396


>sp|Q31LW9|SYL_SYNE7 Leucyl-tRNA synthetase OS=Synechococcus
           elongatus (strain PCC 7942) GN=leuS PE=3 SV=1
          Length = 865

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
 Frame = -1

Query: 258 GFPFGQRSVPPFQGQGFPGWKAKMLLILEGDAL---------SDVVLGNRV-CPPQPVDT 109
           G P G     PF GQ  P W A  +L+  G             D     R   P QPV  
Sbjct: 321 GVPTGGFVTNPFTGQAVPIWIADYVLVEYGTGAVMGVPAHDSRDFAFAQRYGLPVQPV-- 378

Query: 108 DNDNVLITEGPIFEDWNVAYTD 43
               +  TEG I E W   +T+
Sbjct: 379 ----IQPTEGAIAEPWPAPFTE 396


>sp|Q2K711|KUP2_RHIEC Probable potassium transport system protein
           kup 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
           GN=kup2 PE=3 SV=1
          Length = 633

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 270 ILVNGFPFGQRSVPPFQGQGFPGWKAKMLLILEGDAL 160
           I+   F  G+R++      G PGW+ ++ + LEG A+
Sbjct: 575 IMKTSFYLGRRNLVRTPNTGLPGWQERIFMALEGFAI 611
tr_hit_id B4B814
Definition tr|B4B814|B4B814_9CHRO Major facilitator superfamily MFS_1 OS=Cyanothece sp. PCC 7822
Align length 57
Score (bit) 34.3
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916626|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_G04.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4B814|B4B814_9CHRO Major facilitator superfamily MFS_1 OS=Cy...    34   3.8  
tr|B3L3Y0|B3L3Y0_PLAKH Mrna capping enzyme, putative OS=Plasmodi...    34   3.8  
tr|Q0UTL9|Q0UTL9_PHANO Putative uncharacterized protein OS=Phaeo...    34   3.8  
tr|Q7RPD9|Q7RPD9_PLAYO Putative uncharacterized protein PY01520 ...    33   6.5  
tr|Q1DIX3|Q1DIX3_COCIM Putative uncharacterized protein OS=Cocci...    33   6.5  
tr|A2CJ45|A2CJ45_9HOMO ATP synthase subunit a (Fragment) OS=Gomp...    33   8.5  

>tr|B4B814|B4B814_9CHRO Major facilitator superfamily MFS_1
           OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_4759 PE=4
           SV=1
          Length = 394

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 24/57 (42%), Positives = 28/57 (49%)
 Frame = -2

Query: 359 ILNCGLHHIWCADSAILSYTYSRNKIWL*IFSSTDFLLASVLFLLSKVKDFQAGKQR 189
           I N G    W A SAI+   Y  N +WL  FS   F LAS+  LL  V   QA K +
Sbjct: 340 IFNTGYGLAWFAGSAIMGILYDVNSLWLVAFSVV-FQLASIPVLL--VVSLQAAKSQ 393


>tr|B3L3Y0|B3L3Y0_PLAKH Mrna capping enzyme, putative OS=Plasmodium
           knowlesi (strain H) GN=PKH_081850 PE=4 SV=1
          Length = 551

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 284 SCCENTYKIRSQNLHTIYGEGHN*E*ERYEYYILSTINVRRMLKERPKM*ETSPKKGRVK 463
           +C + T +  ++N+H  YGE  N + E Y Y   ST  VR + K      E S    RV+
Sbjct: 133 ACTDGTAQNGNRNIHPCYGEEKNSQRENYIYEFFSTKKVRSVDKYYVLQNENS----RVR 188

Query: 464 ETLIINESS 490
            T  ++E S
Sbjct: 189 VTTYLDEDS 197


>tr|Q0UTL9|Q0UTL9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_04895 PE=4 SV=1
          Length = 202

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 149 TTSESASPSRINNIFAFQPGNP*PWKGGTERWPKGNPLTRIFIAISCCENTYKIRSQNLH 328
           TT+E  S    N++  F   +P  ++G         P+  I   +S C  TY  R Q+ H
Sbjct: 60  TTNEYEST---NDVDIFGSSDPEEFRGSATDSIMQQPIQSIIRPLSSCVRTYPDRMQSRH 116

Query: 329 TIYGE 343
           T+YG+
Sbjct: 117 TVYGQ 121


>tr|Q7RPD9|Q7RPD9_PLAYO Putative uncharacterized protein PY01520
           OS=Plasmodium yoelii yoelii GN=PY01520 PE=4 SV=1
          Length = 1768

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 24/101 (23%), Positives = 46/101 (45%)
 Frame = +1

Query: 205 WKSLTLERRNRTLAKRKSVDENIHSHILLREYV*DKIAESAHHIW*RPQLRMREI*VLHS 384
           WK   +E +N+T A   +++ ++  +I   E +  K  E    I     + ++++     
Sbjct: 608 WKEKVIEEKNKTCAVTINLNNSVFGNIEDYEKLRKKAEEKIRKIKMSTNIAVKKV----- 662

Query: 385 VNDKRKKDAQGTSKDVRDVTQKREGKGDVNNKRVLKIEWRE 507
             +K+KKD        +D+ QK + K     K++ KI W E
Sbjct: 663 --EKKKKD--------KDIKQKGKNKSVFQIKKIRKIFWFE 693


>tr|Q1DIX3|Q1DIX3_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09740 PE=4 SV=1
          Length = 758

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
 Frame = -1

Query: 327 CRFCDLILYVFSQQD-------------MAMNILVNGFPFGQRSVPPFQGQGFPGWKAKM 187
           C FC+LIL  ++++              ++ N L + +P  + ++ P +G  FP W    
Sbjct: 502 CGFCELILRTWAERQEHVAEHFEQGTTMISWNPLRSPYPISKFTMTPVEG--FPPWDLSP 559

Query: 186 LLILEGDALSDVVLGNRVCPPQ 121
           L  L+     D V     CPP+
Sbjct: 560 LHCLQQPGFQDEVYRASQCPPE 581


>tr|A2CJ45|A2CJ45_9HOMO ATP synthase subunit a (Fragment)
           OS=Gomphidius roseus GN=atp6 PE=3 SV=1
          Length = 240

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
 Frame = -2

Query: 449 FWVTSLTSLDVP*ASFLRLSLTECSTH--ISLILNCGLHHIWCADSAILSYTYSRNKIWL 276
           F VTSL SLD P   ++ L+LT  + +  +  IL  GLH++   D+ +L   +S      
Sbjct: 4   FEVTSLLSLDAPIFGYIGLTLTNLALYSLLIFILIAGLHYMGNNDNKLLPSKWS------ 57

Query: 275 *IFSSTDFLLASVLFLLSKVKDFQAGKQRCC*FLKAMHSPMLFSEIVFVRLSLLI 111
                   LL S+   ++ +   Q G++        ++ P ++S   F+ ++ L+
Sbjct: 58  -------ILLESLFSSINSMVREQIGRE--------IYLPFIYSLFFFILIANLL 97